Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g084440.3.1
CDS Infomation

NPL4 family protein (AHRD V3.3 *** A9PCA9_POPTR)
Sequence

ATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATTGACAACCCACAT
GCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTTCCAGTTCAATCG
CAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGATGATTGGTCTCGC
TTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTTACTCACGGTTCT
ATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACCGTACAGCCCGCC
GGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAAATGCGAGTTACT
AGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCCGCCAATGCCTTT
CAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGTTTTATGTATGGT
ACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCGCCCCAGCAAGGG
ACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTGGTGGATGCTATA
GCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACAATTAGTCAGGAT
AAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAGTTACATTCGGAG
GGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAATGACGATGGCGCT
GCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGATTGTTCAAGGAA
GGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCCAAGATGAAGAAA
GATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTCTTCTTGGTTGTT
GTCAAGATTGCGGATCACCAGGGTCCACTTTCTTCATCATTTCCCATTGAAAACAGGATT
ATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAGAGTCTTTCTTTT
GTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTTCTGGACATTAAT
GCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTCCCAGAAGGTTAC
AAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAA

Peptide Sequence

PEP ID

Solyc06g084440.3.1
PEP Infomation

NPL4 family protein (AHRD V3.3 *** A9PCA9_POPTR)
Sequence

MMIRIRSRDGLERVTIDNPHATIAQLKSQIESQLRVPVQSQTLSSNQNLLLAKTPDDWSR
FTDMDNPHTPISSFNLTHGSILYLAYQGERTIPGPTVQPAGSFGRKMTMDDLIAKQMRVT
RQENPHCELVSFDRDAANAFQHYVNETLAFAVKRGGFMYGTVSPEGKVEVHFIYEPPQQG
TEENLLLLRDPDEEKLVDAIAIGLGMRKVGFIFTQTISQDKKDYTMSTAEVLQAAELHSE
GDLKEWVTAIVKLEVNDDGAADVHFEAFQMSDMCVRLFKEGWFETDVKDEIDPKLSKMKK
DVVVGVKDTREVDNDFFLVVVKIADHQGPLSSSFPIENRIIPVSMNALKDHFNRTKSLSF
VKRISDFHLLLLLAKFLDINADVPALAECVLTQSAVPEGYKLLIESMASAS*

Transcript Sequence

Transcript ID

Solyc06g084440.3.1
Transcript Infomation

NPL4 family protein (AHRD V3.3 *** A9PCA9_POPTR)
Sequence

AAATGGAGTATTGATTGATTCTACAAGCCAAAGTTAAAGTTTCTACTTCCTTTCTTCTTC
GACGGTCCTCCCCAACTTCCATACAGATTCACCTGCACTAAACATATCAATCACCATAGG
AATACAACCAAGATGATGATCAGAATCAGAAGCAGAGATGGGTTAGAGCGAGTCACAATT
GACAACCCACATGCCACAATTGCCCAACTCAAGTCCCAAATCGAATCCCAACTTCGAGTT
CCAGTTCAATCGCAAACCCTATCTTCCAATCAGAACCTTTTGCTCGCTAAAACCCCAGAT
GATTGGTCTCGCTTCACTGATATGGACAACCCTCATACACCCATCTCCTCTTTCAATCTT
ACTCACGGTTCTATCCTTTATCTTGCTTACCAGGGTGAGCGCACAATTCCCGGTCCCACC
GTACAGCCCGCCGGTTCATTCGGTAGAAAGATGACCATGGACGACCTAATTGCTAAACAA
ATGCGAGTTACTAGACAAGAGAACCCTCACTGCGAACTCGTTTCCTTCGATCGTGATGCC
GCCAATGCCTTTCAACATTATGTCAATGAAACACTCGCCTTTGCTGTCAAAAGGGGTGGT
TTTATGTATGGTACAGTATCCCCTGAAGGCAAAGTGGAAGTCCATTTTATTTATGAGCCG
CCCCAGCAAGGGACCGAGGAAAATTTGTTGCTTCTACGCGATCCTGATGAGGAGAAATTG
GTGGATGCTATAGCTATTGGATTAGGGATGAGGAAAGTAGGGTTTATATTTACTCAGACA
ATTAGTCAGGATAAAAAGGATTACACTATGTCAACTGCAGAGGTCTTACAGGCAGCTGAG
TTACATTCGGAGGGTGATTTGAAGGAATGGGTGACCGCTATAGTGAAGCTTGAGGTGAAT
GACGATGGCGCTGCCGATGTACATTTTGAGGCTTTTCAGATGAGTGATATGTGTGTGAGA
TTGTTCAAGGAAGGCTGGTTTGAGACGGATGTTAAGGATGAGATTGATCCAAAGCTTTCC
AAGATGAAGAAAGATGTGGTGGTAGGAGTCAAGGACACAAGAGAAGTTGATAACGACTTC
TTCTTGGTTGTTGTCAAGATTGCGGATCACCAGGGTCCACTTTCTTCATCATTTCCCATT
GAAAACAGGATTATTCCAGTGAGCATGAATGCATTGAAAGATCATTTCAATCGAACAAAG
AGTCTTTCTTTTGTGAAGCGAATCTCAGATTTCCATCTGCTACTGTTGCTGGCGAAATTT
CTGGACATTAATGCAGATGTTCCTGCATTGGCAGAATGTGTGCTTACACAGTCAGCTGTC
CCAGAAGGTTACAAGCTCCTTATAGAATCGATGGCTAGTGCCTCTTAAGCAGCATCGCAG
ACATCAGGTACCAGTGATGACATTCTCTTGAGTCGTTACATGTGTTGCAGTGCAGAAATC
CTCTTAATGTTATATTTACCACCAATGAGCTGTTTGGATACTTTTGTTAAATTATATTTG
GTTTAATATAATTGGTTGAAGTTAAATTCTTCATATGTTATGGATGTGAGGGTATGAAGA
TGTTTATTGCGCATGTCTTTTATTGTATCGTCGTATCATAAATTTATAATTCTAATGAGA
AGTTGCAGTGTTTTGAAGCTCGATTTAACAAAATATTCTGTTAAAAGGCATTTCTATTGT
CCACCCTTTGGGGGTGTCTCAAGAATGATAAATGCACACATGATTGTTCTTCTTAAACAT
GTAGAATAGAGTATTTGTTTGTTGTCTCTCTCTCCCGCAGTAATTGAAATTTGGATAGGA
ATAATCGATCGTTTGTTTGTGCAAAAAACAGATGAGTTATCTCATTCTGTAACAAGCATT
GCATGTCATCTAGGGCTCCATCTGCAATGGTCATCATTTCTCATCAAAACACTACTACTC
CATATGATTATTATATACATACAGAAGTGCAAATCTATGGAGATGAATTACGGACGTATG
CCTTGTGGGAATCTATATTTGCCTCATTGCTAACTTTACTATGACGTGTCCGACAGATAC
CGTATGAAAAATCACAAAAGTACACGACAGTTTAAAAGAATTCTTTTTTTTTCTTTTTAC
TTTTGTGGTTAACGATGTATAAAAATGCGCGCATTTGTTGTTGTTCCAAACTCCAAAGGA
CTTGGATACAAGAAGAAAAAAAATGGATACAAGGACATAAGACACCACCAAATGCAATGG
GATATATATTCAATGGAACTACATTTTGTTTCAGTTCATTGTTGATGTTAGACGGAATAG
CAAATCAGGTGAACCAGAGCCAAGACGCTGAGCATAACGACCTTTCTTCAAATACCTAGC
AATACGGCCAACAGGGAATTGGAGACCTGCTTTTTGAGATCTGGACACTGATTTTTTTGA
ACCTTTGGCCTTACCTCGACCACCAGCGGACTTTGCTTCAACTGTAGAACTCCTTTTTTA
TATCTTTTCGAAAGCTTGAATTTGAGATAAGGTTGATAATGAGAAGTAAATTGGTTTGGT
TGTTTATATATAGAGAGAAAAGGGT