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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g083860.2.1
CDS Infomation

LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) (AHRD V3.3 *** AT2G31160.1)
Sequence

ATGGCTTCTTTTACGGAATTAGTTGAAAGTTCGAATCATCATCATCACGAGAAAATCAAC
ATCGAAACAGTTAACAATATCGAGATAATTTCTGTTTCTGCTTCTTCTTCTTCATCTGCT
GCTACACCGGCACCAGCTAGCTCAAGTAGCAGGTACGAAAATCAGAAGCGGCGGGATTGG
AACACGTTCGGTCAGTACCTGAGAAACCACAGGCCTCCACTCACGCTCTCTAGATGCAGT
GGTGCTCACGTACTTGAATTCCTTCGTTACCTTGATCAATTCGGCAAGACCAAAGTTCAT
ACTCCGATGTGTCCGTTTTATGGGCATCCGAATCCGCCCGCACCGTGTCCGTGTCCGCTA
AAGCAAGCTTGGGGGAGCCTTGACGCACTGGTAGGACGACTTAGAGCGGCTTATGAAGAA
AATGGAGGGAAGCCGGAAACGAACCCATTTGGTGCTCGAGCTGTTAGGCTTTATCTTCGT
GAGGTTCGTGATTTGCAGTCCAAAGCGAGGGGAGTTAGTTACGAGAAGAAGAAAAAACGC
AAACGCCCAACTCCACCACCACCAATACCACCACCGCAACTGTTGTCCACGTCAGTACAA
CTGCCACTCTCATCGCCACCACCATCAGGTAAAGGTGCATTACCATTTGAGTTATGA

Peptide Sequence

PEP ID

Solyc06g083860.2.1
PEP Infomation

LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) (AHRD V3.3 *** AT2G31160.1)
Sequence

MASFTELVESSNHHHHEKINIETVNNIEIISVSASSSSSAATPAPASSSSRYENQKRRDW
NTFGQYLRNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPMCPFYGHPNPPAPCPCPL
KQAWGSLDALVGRLRAAYEENGGKPETNPFGARAVRLYLREVRDLQSKARGVSYEKKKKR
KRPTPPPPIPPPQLLSTSVQLPLSSPPPSGKGALPFEL*

Transcript Sequence

Transcript ID

Solyc06g083860.2.1
Transcript Infomation

LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) (AHRD V3.3 *** AT2G31160.1)
Sequence

CACTTCATTTCCATATAAACCCTAAACAAACAGTACTCTTCCCCTTCTCTACCCCGTTAA
TACCAAAAAAAATAAAATACAAAGCTAGCTATACCAGTACTCTTCCAATTTTTGCTAGTA
TTGTTCAAACAAACGAATATTTCTTTATTTTGTTACTGTGATTATGAACAGTAACAGAAT
TAATAAAGCGATCGATCTAGAACAAGGAAGATAGAGATCGATCCTATTTATGGCTTCTTT
TACGGAATTAGTTGAAAGTTCGAATCATCATCATCACGAGAAAATCAACATCGAAACAGT
TAACAATATCGAGATAATTTCTGTTTCTGCTTCTTCTTCTTCATCTGCTGCTACACCGGC
ACCAGCTAGCTCAAGTAGCAGGTACGAAAATCAGAAGCGGCGGGATTGGAACACGTTCGG
TCAGTACCTGAGAAACCACAGGCCTCCACTCACGCTCTCTAGATGCAGTGGTGCTCACGT
ACTTGAATTCCTTCGTTACCTTGATCAATTCGGCAAGACCAAAGTTCATACTCCGATGTG
TCCGTTTTATGGGCATCCGAATCCGCCCGCACCGTGTCCGTGTCCGCTAAAGCAAGCTTG
GGGGAGCCTTGACGCACTGGTAGGACGACTTAGAGCGGCTTATGAAGAAAATGGAGGGAA
GCCGGAAACGAACCCATTTGGTGCTCGAGCTGTTAGGCTTTATCTTCGTGAGGTTCGTGA
TTTGCAGTCCAAAGCGAGGGGAGTTAGTTACGAGAAGAAGAAAAAACGCAAACGCCCAAC
TCCACCACCACCAATACCACCACCGCAACTGTTGTCCACGTCAGTACAACTGCCACTCTC
ATCGCCACCACCATCAGGTAAAGGTGCATTACCATTTGAGTTATGACGACTCAGCAGCAT
ACCTTCAGGCCGCGCAAAACCATGGGATTAACTTGAGATTAAAGTAGTGACCAAATCAAA
AGTTTTAATAAATTAAACTTGTGCGGTGATATATCGATCTTTTCACTTTATCTTATATAT
GCTTTATTTAAAATATCTTTAATTTTATTCTGTTTGACATATTTTGATTTGATATGTGGA
TAAGAAAACAATTTAGACA