Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g076400.3.1
CDS Infomation

Protein phosphatase 2C (AHRD V3.3 *** A0A103XPQ7_CYNCS)
Sequence

ATGGCAGAAGTCTGTTTTGGAGTTGTGACTGAAACTGATTCATCATCACCGTGTGAATCA
AGTTCACGGGCGGTGAGGAGGAGGAGAATGGAGCTTCGAAAAATAAAGGTCATAGCTGGA
GTAACGCAACCCGAAACAGAGAATGGAATTAAACGTCCAAAAATGAAACTTATTTCTGGT
TCTGTTTCAAGGATTTGTGATAACGCTGTGGAAAGTTCTAGCACCGACGATGATGAAGAA
CAACTGAGATTAGTAGAGACGAAAGGGTCACCGCCAACTATTATTTTGACTCCATATTTG
GGTCCTTTGAATTCTACTCTCCTTGTTCAATCAGTGGCTTACCCAAAGTTTGGCTTCGCC
TCTGTTTGTGGAAGGAGAAGAGATATGGAAGATGCAGTCGCAATTCATCCTTCATTTTGC
CAAATGGAACAAGGAAACAGTGGAGAATTACATTACTTTGCCGTTTACGATGGTCATGGC
TGCTCTCATGTGGCGACCAAGTGTAAAGAGAGGTTACACGAGCTGGTGAAGGAGGAGCTG
GAGAACACAGAAGGAGATCATGAAGAGTGGGAGCATTTAATGAACCGAAGCTTCAATCGA
ATGGAGAAAGAAGTGATTGAATGGAACAAGAGCGTAACCGGAGCCACATGCCGTTGCGAA
CTTCATACGCCGGAATGTGACGCCGTTGGTTCAACGGCGGTAGTCGCCGTTGTTACGCCG
GACAAGATTATTGTCGCGAATTGTGGTGATTCCAGAGCTATTCTTTGCCGGAATGGCAAA
GCTATTCCCCTTTCTAACGATCAAAAACCGGATCGTCCGGATGAACTTAACCGCATCCAG
GAAGCTGGTGGCAGAGTAATCTACTGGGACGGCCCTCGTGTTTCAGGCGTTTTGGCTATG
TCAAGAGCCATTGGTGATAATTATTTGAAGCCGTATGTGATCTGCGAGCCAGAAGTGACG
ATAACTGATCGAACGTCGGAGGATGACTGTTTGATTTTAGCAAGTGACGGATTATGGGAC
GTAGTCTCAAACGACACTGCATGTGGCGTTGCCGGAATGTGCCTGAAAGGGAATGCATCG
CCGGCGTCAATGCCGGGAAATGGAACCGACGGCGAGGTGAATTCCGACCAGTGTTGCTCT
GATGCATCGATGCTTTTGACTAAACTAGCCCTTGCTAGGCGGAGCTACGACAACGTCAGC
GTTGTCGTGGTTGATTTGAAGAACTACAAGTAG

Peptide Sequence

PEP ID

Solyc06g076400.3.1
PEP Infomation

Protein phosphatase 2C (AHRD V3.3 *** A0A103XPQ7_CYNCS)
Sequence

MAEVCFGVVTETDSSSPCESSSRAVRRRRMELRKIKVIAGVTQPETENGIKRPKMKLISG
SVSRICDNAVESSSTDDDEEQLRLVETKGSPPTIILTPYLGPLNSTLLVQSVAYPKFGFA
SVCGRRRDMEDAVAIHPSFCQMEQGNSGELHYFAVYDGHGCSHVATKCKERLHELVKEEL
ENTEGDHEEWEHLMNRSFNRMEKEVIEWNKSVTGATCRCELHTPECDAVGSTAVVAVVTP
DKIIVANCGDSRAILCRNGKAIPLSNDQKPDRPDELNRIQEAGGRVIYWDGPRVSGVLAM
SRAIGDNYLKPYVICEPEVTITDRTSEDDCLILASDGLWDVVSNDTACGVAGMCLKGNAS
PASMPGNGTDGEVNSDQCCSDASMLLTKLALARRSYDNVSVVVVDLKNYK*

Transcript Sequence

Transcript ID

Solyc06g076400.3.1
Transcript Infomation

Protein phosphatase 2C (AHRD V3.3 *** A0A103XPQ7_CYNCS)
Sequence

CTGATTTCTACGTTTCTCTTCTCTCTTCTCTCTCTGTGTTTACTGCACTTAATTTTTCCG
GCAATGGTTCTGTAAACTGCATATTTTTCTGAGTGAGGACTTAAAAATTAAAGGCCTCTT
CAGTTTCTGAAGTTGTCTTGCTTGTTATAAAAGTGTGAATGGCAGAAGTCTGTTTTGGAG
TTGTGACTGAAACTGATTCATCATCACCGTGTGAATCAAGTTCACGGGCGGTGAGGAGGA
GGAGAATGGAGCTTCGAAAAATAAAGGTCATAGCTGGAGTAACGCAACCCGAAACAGAGA
ATGGAATTAAACGTCCAAAAATGAAACTTATTTCTGGTTCTGTTTCAAGGATTTGTGATA
ACGCTGTGGAAAGTTCTAGCACCGACGATGATGAAGAACAACTGAGATTAGTAGAGACGA
AAGGGTCACCGCCAACTATTATTTTGACTCCATATTTGGGTCCTTTGAATTCTACTCTCC
TTGTTCAATCAGTGGCTTACCCAAAGTTTGGCTTCGCCTCTGTTTGTGGAAGGAGAAGAG
ATATGGAAGATGCAGTCGCAATTCATCCTTCATTTTGCCAAATGGAACAAGGAAACAGTG
GAGAATTACATTACTTTGCCGTTTACGATGGTCATGGCTGCTCTCATGTGGCGACCAAGT
GTAAAGAGAGGTTACACGAGCTGGTGAAGGAGGAGCTGGAGAACACAGAAGGAGATCATG
AAGAGTGGGAGCATTTAATGAACCGAAGCTTCAATCGAATGGAGAAAGAAGTGATTGAAT
GGAACAAGAGCGTAACCGGAGCCACATGCCGTTGCGAACTTCATACGCCGGAATGTGACG
CCGTTGGTTCAACGGCGGTAGTCGCCGTTGTTACGCCGGACAAGATTATTGTCGCGAATT
GTGGTGATTCCAGAGCTATTCTTTGCCGGAATGGCAAAGCTATTCCCCTTTCTAACGATC
AAAAACCGGATCGTCCGGATGAACTTAACCGCATCCAGGAAGCTGGTGGCAGAGTAATCT
ACTGGGACGGCCCTCGTGTTTCAGGCGTTTTGGCTATGTCAAGAGCCATTGGTGATAATT
ATTTGAAGCCGTATGTGATCTGCGAGCCAGAAGTGACGATAACTGATCGAACGTCGGAGG
ATGACTGTTTGATTTTAGCAAGTGACGGATTATGGGACGTAGTCTCAAACGACACTGCAT
GTGGCGTTGCCGGAATGTGCCTGAAAGGGAATGCATCGCCGGCGTCAATGCCGGGAAATG
GAACCGACGGCGAGGTGAATTCCGACCAGTGTTGCTCTGATGCATCGATGCTTTTGACTA
AACTAGCCCTTGCTAGGCGGAGCTACGACAACGTCAGCGTTGTCGTGGTTGATTTGAAGA
ACTACAAGTAGACAGCATTAAAACCTTTTTTTTTTTTGCAGCATTTTTTTCGCTTTTATG
TAACATTTTAGTGTGTTTATTTTGGATGGTGTTTAAGGTGGTATTCAGTTTTTTAGATTA
GTTCTTTAGACGGTTGAAATTGGAAAAAAATGATTTGGGGAAAAGAGGGGATTCCTCAAA
TGAGAGTTTTAGGTTTTGTTAACCTTGTTCTGCACTGCTTTAACTTATCCAAGGGATTTA
GTATGTACAGATTAAGACTATAATTTCAATTATCAAGTTTACAAATGCCAAAATAAAAAT
ACGCGAAGAGTGAAAGTTTATCATTAGTATCTTTTTAAGTGTGGTACGTCTATTTCTGTT
AATTCTAATGAATTTGATGCTCCCTCCGGCGAGTTAAATGATCTGGATGGTAATTTATAA
TATTTTTATATAATGAATTATCAAATAAATGTAATTTAATTATAAAATTTATAGTCAATT
TTATACGTAGCCTAAAGATAACACCGAAGTAAAGTTCCAAATTAGTTGTCCCAATAGAAC
AACTTTCCTGTACAATTCTCTCTCATTAACTTTGGTCTCCACCATTTGGCAACAGCCTAC
AAGTTCTTTATGATATATGAAGAATGTTAAAACTTCTCCTTTCTTTAGGGTCCCCAGGAT
AGTGATGTTGATTTTTTGGCTACACGCTCTCACTTATGCATTACACGTAGCTTGGATTGT
TACAAGCCTTATTCACACAACTAATATTTTCTTTGGCGGGGTGGGGCTCTTTCTTTTTCA
ATCTTATGACCAAAACAACATATTTTTGAGTTGGCAAAGTAAAGAAAATTGGATGCGTGT
AAAGTCTAATAATGTAACAAAACAACCATTTAGTACACCATGTGATATTTGGTTTTGTAG
TTGCCGTGAGAGACCAGTTTCTTAATGTACCCAGTAATTGTTCATGCAAACATGATGATT
ATATACTCGTGGTCATTTACAAATTGAACAGAAGAAAATAATTCATTCAGATCTATTGAG
AGGATACGATATGTGGAATTAATTAAAGCCGCACGTGATGAATAACCGGCCAATCACTAT
ATTCTTCATTTGAAACTTCAATAGTTTTACTTCATACACAGATAAAGTGCATATTTCAGT
GAAATAGTTGACGCATTAACATTAAATGATTTCAGCAACTATCCCAGAGGTTCCATTGAC
CAGTCCAGTCCAAGAGAAACACAAACTACTTCAAAGTAATGTTCAGTAAAATGGTTGCGG
TACAAGCAAAACCAAACCATAATGAATGGAAGTTGGAGCTCAAGATTTTGCATATTAACT
GGGAAAGCAGGAAGTAAATAATATTTTTCCTCAGCTTCCTGCCGATTCTGAACTTAGCAA
AGAATAAAACTTCAGAGAAGTAAAAACAGGAAAGAGGTAATAATGACTAGCAACTTTTTT
CTCTAGACATGAAAGATTGTTTTCACTACTCCAAGGACCAGTATATTAACCGACAGATTC
AGGGCATTGTAGTTGAGATCACAAAAATCAGATTAAGTTGGTTCCAATATAGGTCACCCA
TCAATGAGAAGAAACATGTAAATAATGGAACTTGAATAACGTAAATAGCCGAAACAAAGG
CAGGCACATTTGCAAGGAGAAATTTTCCAAGACTTGCTTCTAATTTCTAAGATGACACTA
CAAAGTAGATGATGTTCATGCCATAACTACAATCGAACACAAGCACATAAAACTGAGGTA
TCAACAACAGAAACCTTCACCTATACGCTCTTGTACATAAGCCCGTCTTGCAATGCCAGA
CCAGCCAAAACTTACCCTTTCACAT