Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g075160.3.1
CDS Infomation

SIT4 phosphatase-associated family protein (AHRD V3.3 *** B9HQ89_POPTR)
Sequence

ATGTTTTGGAAGCTCACACATCTGTCCTGTTCGCCGGTTGAAGAGGTGTTAGACAAGGAA
AACTTCACATTGGAAGAGCTTCTTGATGAAGAAGAGATAATCCAAGAATGCAAAGCTTTG
AATAGCCGCCTGATAAATTTTTTGAGAGATAGAGCTCAGGTTGAGCAGTTGCTGCGATAC
ATTGTTGAAGTGCCTTCTGAGGATGCCGATAGCAAATGGAAGTTTAAGTTTCCTTTCATC
GCATGTGAGATATTCACTTGTGAAATTGATGTCATCCTTAAGACTTTAGTGGACGATGAA
GAGCTAATGGATTTGCTCTTTTCGTTCTTGGAGACCGACCGTCCTCATTGTGCTTTGCTT
GCTGGGTATTTTAGTAAGGTCGTGGTGTGCCTCATGTTGCGGAAGACTATTCCACTTATG
AATTATGTCCAGACCCATCATGATGTTTTCCGCCAGATGGTGGATTTGATTGGTATTACA
TCCATAATGGAGGTTTTGGTGCGACTTGTAGGCGCTGATATTTACCCAAACACTAAGGAT
GTCATGCAATGGCTGGCTGACAGCAATTTATTAGAAATGATTGTGGATAAATTGAGCCCC
TCTAGTTCTCCAGAAGTACATGCTAATGCAGCAGAGACTCTATGTACAATAACCCTAAAT
GCACCATCTCCTCTTGCTACTAAGCTATCTAGCCCAAGTTTTATAGCAAGGATATTCAGT
CATGCCCTTGAAGACTCACACTCAAAGTCCGCCCTTGTCCATTCATTATCTGTATGCATA
TCTTTGCTGGATCCAAAAAGATCAATTCCATCTCCCATGATGTATTCTTATCGCTGCCAG
CATGTTTATGAGTCATCTGTGTGTGTCAATCCTGAGACTATAAGTGCAATGCTGCCAAAT
TTCAGCAACTTGCTAAAGCTGTTGAATGTATCATCTGATGACAAGGTTCTGCCTACAACA
TATGGTGAACTCAGGCCGCCTCTAGGGAAACATCGGTTAAAGATTGTGGAATTCATTTCT
GTGCTGCTAAAAACTGGCAATGAAGTTGCAGAGGATGAATTGATCAGTTCTGGGACAATT
GAGAGAGTCCTGGATCTCTTTTTTGAGTACGCATTTAACAATGCATTGCATCATCACGTA
GAGAGTATAATCAATTCATGCTTGGAAAGCAGAAACAGCGTCCTGGTCGATCATCTTTTT
GAAGACTGTAATTTGCTTAGAAAAATTCTTCAAACGGATAAACAGCCCACAGTTTCTGGC
AGTGAAAGTCAGCCCACTTTTCCTGCTACTGGTAAACAAGCACCCCGACTGGGTAACATA
GGGCATCTAACACGCATTGCTAACAAACTTGTACAGTTGGGAAGCAATGACAATCGCATT
CGAGGACATCTAGAGAAAAATATGGAATGGAGTGATTGGCACACTACTGTCTTACAGGAG
CGTAATACACTCGAAAATGTCTATCGATGGGCTTGTGGCCGGCCAACTGCATTACTAGAT
AGGACAAGAGACAGCGACGAGGAAGATGTTCATAACAGAGATTATGATGTAGCAGCTTTA
GCAAATAATCTGAGCCAGGCATTCCAGTACACCATATATGATAATAATGGCGCTGAAGAG
GATCACGGAGCTCTTGATCGAGATGATGAGGATGTATACTTTGATGATGAGTCTGCTGAA
GTTGTCCTGAGGTTGGGAGAAGAGCAAGGGAGCAATTTGTTCACAAATTCGGATTGGTTT
GCTTTCCGAGATGATAGAACTGGAGATGATCCCAAGAGCACCTCACCTACTGAAGTGATG
GAAGACATTAACCTTAATGGAACAACGAATGGTGGTAATAGCAATAGTGATGATGAGGTG
GTAGTTGGAGAGCAGGAGGAATTGGCTGAGAGAAAATCAGATGTAATGCCCAGTTCTAGT
TCAGATGCCTTTAATGGAGCCGATTCTGCTAATGGTGGAGACTTCAATCAACAAAAAGAT
AAAGCAGGTGTGTCAGGTGATGGGGATTTCTTCCATTTTGAGAAGTCAGACAGTGATGAC
CCGTTTGGAGACAGGCCTATACCTGAATGGGTTGCATGGGGGAATGGCTCAGTTGGTGGA
TCCGTGAATCCCTTTGAAGATAATGGTGACTGTAGCAAAAATCTTGCAAATTCAGGGGAG
GCAGTAACTCTCTCGATTAGTCCCACTTCTTGCAGTGGTGGAGAGTCTATTCCAAATAGC
GTATCTACATCTCCTGATTCTAACAAAAGTTCATCAGGATCTGATTCTAGTCAAAAAGCA
GCAGCAGCCCCTGTGCCTTCTTTGTTTGAAGAGGATGTTGAATTTGTTGGTGTGGAATTA
GAGGGTACTGAAAAGGCAATGGAACACGCTCTTAAGGAGGGTATTGTTGGGGAAGCGGCT
CCATTGAAAAGGAGCTTGGTTCCTAAGATGCCAGAAAAGGATAATACAGATGAGGGCGGA
TCAGGAGTGAAAGAATTCAATGATGCAAACTTTTGGAGAGTGGATCAAGAAGTTACAGTA
CTGGAATAA

Peptide Sequence

PEP ID

Solyc06g075160.3.1
PEP Infomation

SIT4 phosphatase-associated family protein (AHRD V3.3 *** B9HQ89_POPTR)
Sequence

MFWKLTHLSCSPVEEVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDRAQVEQLLRY
IVEVPSEDADSKWKFKFPFIACEIFTCEIDVILKTLVDDEELMDLLFSFLETDRPHCALL
AGYFSKVVVCLMLRKTIPLMNYVQTHHDVFRQMVDLIGITSIMEVLVRLVGADIYPNTKD
VMQWLADSNLLEMIVDKLSPSSSPEVHANAAETLCTITLNAPSPLATKLSSPSFIARIFS
HALEDSHSKSALVHSLSVCISLLDPKRSIPSPMMYSYRCQHVYESSVCVNPETISAMLPN
FSNLLKLLNVSSDDKVLPTTYGELRPPLGKHRLKIVEFISVLLKTGNEVAEDELISSGTI
ERVLDLFFEYAFNNALHHHVESIINSCLESRNSVLVDHLFEDCNLLRKILQTDKQPTVSG
SESQPTFPATGKQAPRLGNIGHLTRIANKLVQLGSNDNRIRGHLEKNMEWSDWHTTVLQE
RNTLENVYRWACGRPTALLDRTRDSDEEDVHNRDYDVAALANNLSQAFQYTIYDNNGAEE
DHGALDRDDEDVYFDDESAEVVLRLGEEQGSNLFTNSDWFAFRDDRTGDDPKSTSPTEVM
EDINLNGTTNGGNSNSDDEVVVGEQEELAERKSDVMPSSSSDAFNGADSANGGDFNQQKD
KAGVSGDGDFFHFEKSDSDDPFGDRPIPEWVAWGNGSVGGSVNPFEDNGDCSKNLANSGE
AVTLSISPTSCSGGESIPNSVSTSPDSNKSSSGSDSSQKAAAAPVPSLFEEDVEFVGVEL
EGTEKAMEHALKEGIVGEAAPLKRSLVPKMPEKDNTDEGGSGVKEFNDANFWRVDQEVTV
LE*

Transcript Sequence

Transcript ID

Solyc06g075160.3.1
Transcript Infomation

SIT4 phosphatase-associated family protein (AHRD V3.3 *** B9HQ89_POPTR)
Sequence

GATCTTCACGGCTTCAATATCTCTACCTTTTGATCTTCAAAAAGCCTGTATTTTTGTTGA
CTTTGCTTTCACTGTTTCGCTACAAAACCTCCTCTCTCGATTCACTTTAGGGCTTACAGA
TCTGTTTTTCGTTCAGTATGTTTTGGAAGCTCACACATCTGTCCTGTTCGCCGGTTGAAG
AGGTGTTAGACAAGGAAAACTTCACATTGGAAGAGCTTCTTGATGAAGAAGAGATAATCC
AAGAATGCAAAGCTTTGAATAGCCGCCTGATAAATTTTTTGAGAGATAGAGCTCAGGTTG
AGCAGTTGCTGCGATACATTGTTGAAGTGCCTTCTGAGGATGCCGATAGCAAATGGAAGT
TTAAGTTTCCTTTCATCGCATGTGAGATATTCACTTGTGAAATTGATGTCATCCTTAAGA
CTTTAGTGGACGATGAAGAGCTAATGGATTTGCTCTTTTCGTTCTTGGAGACCGACCGTC
CTCATTGTGCTTTGCTTGCTGGGTATTTTAGTAAGGTCGTGGTGTGCCTCATGTTGCGGA
AGACTATTCCACTTATGAATTATGTCCAGACCCATCATGATGTTTTCCGCCAGATGGTGG
ATTTGATTGGTATTACATCCATAATGGAGGTTTTGGTGCGACTTGTAGGCGCTGATATTT
ACCCAAACACTAAGGATGTCATGCAATGGCTGGCTGACAGCAATTTATTAGAAATGATTG
TGGATAAATTGAGCCCCTCTAGTTCTCCAGAAGTACATGCTAATGCAGCAGAGACTCTAT
GTACAATAACCCTAAATGCACCATCTCCTCTTGCTACTAAGCTATCTAGCCCAAGTTTTA
TAGCAAGGATATTCAGTCATGCCCTTGAAGACTCACACTCAAAGTCCGCCCTTGTCCATT
CATTATCTGTATGCATATCTTTGCTGGATCCAAAAAGATCAATTCCATCTCCCATGATGT
ATTCTTATCGCTGCCAGCATGTTTATGAGTCATCTGTGTGTGTCAATCCTGAGACTATAA
GTGCAATGCTGCCAAATTTCAGCAACTTGCTAAAGCTGTTGAATGTATCATCTGATGACA
AGGTTCTGCCTACAACATATGGTGAACTCAGGCCGCCTCTAGGGAAACATCGGTTAAAGA
TTGTGGAATTCATTTCTGTGCTGCTAAAAACTGGCAATGAAGTTGCAGAGGATGAATTGA
TCAGTTCTGGGACAATTGAGAGAGTCCTGGATCTCTTTTTTGAGTACGCATTTAACAATG
CATTGCATCATCACGTAGAGAGTATAATCAATTCATGCTTGGAAAGCAGAAACAGCGTCC
TGGTCGATCATCTTTTTGAAGACTGTAATTTGCTTAGAAAAATTCTTCAAACGGATAAAC
AGCCCACAGTTTCTGGCAGTGAAAGTCAGCCCACTTTTCCTGCTACTGGTAAACAAGCAC
CCCGACTGGGTAACATAGGGCATCTAACACGCATTGCTAACAAACTTGTACAGTTGGGAA
GCAATGACAATCGCATTCGAGGACATCTAGAGAAAAATATGGAATGGAGTGATTGGCACA
CTACTGTCTTACAGGAGCGTAATACACTCGAAAATGTCTATCGATGGGCTTGTGGCCGGC
CAACTGCATTACTAGATAGGACAAGAGACAGCGACGAGGAAGATGTTCATAACAGAGATT
ATGATGTAGCAGCTTTAGCAAATAATCTGAGCCAGGCATTCCAGTACACCATATATGATA
ATAATGGCGCTGAAGAGGATCACGGAGCTCTTGATCGAGATGATGAGGATGTATACTTTG
ATGATGAGTCTGCTGAAGTTGTCCTGAGGTTGGGAGAAGAGCAAGGGAGCAATTTGTTCA
CAAATTCGGATTGGTTTGCTTTCCGAGATGATAGAACTGGAGATGATCCCAAGAGCACCT
CACCTACTGAAGTGATGGAAGACATTAACCTTAATGGAACAACGAATGGTGGTAATAGCA
ATAGTGATGATGAGGTGGTAGTTGGAGAGCAGGAGGAATTGGCTGAGAGAAAATCAGATG
TAATGCCCAGTTCTAGTTCAGATGCCTTTAATGGAGCCGATTCTGCTAATGGTGGAGACT
TCAATCAACAAAAAGATAAAGCAGGTGTGTCAGGTGATGGGGATTTCTTCCATTTTGAGA
AGTCAGACAGTGATGACCCGTTTGGAGACAGGCCTATACCTGAATGGGTTGCATGGGGGA
ATGGCTCAGTTGGTGGATCCGTGAATCCCTTTGAAGATAATGGTGACTGTAGCAAAAATC
TTGCAAATTCAGGGGAGGCAGTAACTCTCTCGATTAGTCCCACTTCTTGCAGTGGTGGAG
AGTCTATTCCAAATAGCGTATCTACATCTCCTGATTCTAACAAAAGTTCATCAGGATCTG
ATTCTAGTCAAAAAGCAGCAGCAGCCCCTGTGCCTTCTTTGTTTGAAGAGGATGTTGAAT
TTGTTGGTGTGGAATTAGAGGGTACTGAAAAGGCAATGGAACACGCTCTTAAGGAGGGTA
TTGTTGGGGAAGCGGCTCCATTGAAAAGGAGCTTGGTTCCTAAGATGCCAGAAAAGGATA
ATACAGATGAGGGCGGATCAGGAGTGAAAGAATTCAATGATGCAAACTTTTGGAGAGTGG
ATCAAGAAGTTACAGTACTGGAATAACTGGGGAATTCAGTTGACCCTTATCTGAATTTAG
AAACACAGCTGATACGCAGGATACTCATTTTCAGTTTGGTGAGACTATACAGGTGTACAG
TGTACTTTGTGTTTCAATTGGGATCGACACAAGGATAACCTATTGGTTGTTACTGATTTT
TTTGTTGTTCCACTCTGTCCAGGTTTCCTTTTGATTAGTGAAAATTTTGGTTTCTCAATT
CTCAATATGGCATATTCATTCGAGTTTTGGAGTCTTGTAGTAGTTGTATGGATTCTGGAG
TTATTTCAATTATCAATAACATTTTTTCTTTGCTAACTATCCAGTTAAAGGCACATTCGT
GGGATGCTGATGGAAACGACTCTCATCCTGCTTGTCTGTCTCATGCTATGATTGGATGAA
AATGTTTTATCATCAGCGTGTTTCGATTGAATAGAGTCAAGGTAATTATATATATAAAAC
ATGCCACAGATTAGCTCATAGTTCTAGCAATTGGGTTAAATTCAGTAGGATGACAAGGTC
TAAACGATACACTTCTGTTTTGGGAATTAAATATTACTTAATTCTGGAGTTTCTGGAAAC
GTAAATTTATTTTCAAGAAGTTGTGAAATAAATTTTTGATTTGAAGTTAGAAACTTATAT
TAATTTGCATACTTCAGATCAATTCGTTATAA