Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g074400.3.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** W9R5G8_9ROSA)
Sequence

ATGGACAAAGCCAAAAACAAGAAGAAAAACCTAACCCCAGAAGGTCAATTCCGGTCAAGC
CTAGATAATTGCTCCAAAACCAAAGATCTTTCTACTGCCATCTCCTTATACGAATCCGCT
ATTTCAGATGCCTCAACAATCCGCCTTTCCAGTAACCATTTCAATTCTTTTCTTTACATC
TGCTCCAACTCTTTTTCAGACCCATCAACGAAAAATGACGCTATTCAATTTGGGTTTCGA
GTTTTTGAACATATGGATTCGTGTAACATAACCCCTAATGAGGCAACTGTCACGGCTGTT
GCTCGGCTGGCGGCAGCAACTGATGACGGTGACAGAGCATTTGAGTTGGCTAAAGGGGTG
GGGAATTGTGGAAAGTTAAGGACTTATGGACCGGCTTTGTTTTGTTTTTGTAAGATGGGT
GAGGCTGATAAGGCCTATCAAGTGGAAGAACACATGCGGTCTCTTGGTTTGCAACTTGAG
GAAGCTGAGCTTGCTGGGTTGTTAAAGGTGAGTGTGGAGAAAGAAAGGGAAGAGAAGGTC
TATCAGTATTTACATAAACTGAGAATGTCAATCAGGAGCGTAAGTGACTCGACAGCAGAA
ATAATACAGAGTTGGTTTGGAGGGGAAATGGCAACTAAGGTGGGGTTATCCAACGGGGAT
ATGGATCAGGTGAAAGAAGTAATTTTACAAAATGGTGGAGGGTGGCATGGTCTCGGATGG
CTTGGAAAGGGTAAATGGCTTGCACAGAGGTCCCAAATAGCTCCTGATGGGAGGTGTCTA
TCTTGTGGCGAACAGTTGGTTTGTGTTGATATTGACAGATCAGAAACGGAACGATTTGCA
GAGTCAGTTGCTTCTTTGGCAATGGAAAGGGAAGTCCATTCCAATTTTAAGGAATTTCAG
GACTGGCTGGAAAAGCATTCAGATTATGATGCTGTAGTAGATGCAGCAAATGTTGGGCTT
TTTCAGCAGAATTTTGCTGCGGGAGGCTTTAGTATTGCACAGCAGTTTGTTGCTGTTGTG
AAGGAATTGCATAGCAGGAGCAACAAGTGGCCACTGGTCATATTACACAAAAAGCGTGTT
CGTACACTTCTTGAGGATGCTGGCTATAGAGAGTTGCTTGAAGAGTGGATAAATGAAAAG
ATACTTTACGGAACACCCTTTGGATCCAATGATGACTGGTACTGGCTTTATGCAGCAGTG
AAATGTAAGTGTTTGCTCGTGACAAATGATGAAATGAGAGATCACATCTTTGAGCTCCTG
GGTAGTAGCTTTTTTGCCCGATGGAAAGAAAGACATCAGGTGAAGTACACTTTTGTTAAA
GGGGAGATTAAGCTTCTGATGCCACCCACATATTCTGTTGTCATTCAGGAATCCGAGAAC
GGGTCGTGGCATGTGCCTCTGGCAGGTGAGGTAGTTGAGGAGTCTTCAAGGACTTGGCTC
TGCATCACCAGACAGGCTTCATGTGAATCTGACAATAAACAACTTGCAAGTGTAGTAGAA
GCTTCTGAAGTTAGTGAACCTGATCAAATTGCAGCCTGTTGCCATTCAGATAGTTTTACA
AGTCAGAATGGCGGCAGCTTAAATAAATGTTCTGGTTTGGCTGGTAAGAGGAAAGAGAGG
TCCCCTTCTCCAACTCCATCTCACTCCAGTTTACAATCTTGA

Peptide Sequence

PEP ID

Solyc06g074400.3.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** W9R5G8_9ROSA)
Sequence

MDKAKNKKKNLTPEGQFRSSLDNCSKTKDLSTAISLYESAISDASTIRLSSNHFNSFLYI
CSNSFSDPSTKNDAIQFGFRVFEHMDSCNITPNEATVTAVARLAAATDDGDRAFELAKGV
GNCGKLRTYGPALFCFCKMGEADKAYQVEEHMRSLGLQLEEAELAGLLKVSVEKEREEKV
YQYLHKLRMSIRSVSDSTAEIIQSWFGGEMATKVGLSNGDMDQVKEVILQNGGGWHGLGW
LGKGKWLAQRSQIAPDGRCLSCGEQLVCVDIDRSETERFAESVASLAMEREVHSNFKEFQ
DWLEKHSDYDAVVDAANVGLFQQNFAAGGFSIAQQFVAVVKELHSRSNKWPLVILHKKRV
RTLLEDAGYRELLEEWINEKILYGTPFGSNDDWYWLYAAVKCKCLLVTNDEMRDHIFELL
GSSFFARWKERHQVKYTFVKGEIKLLMPPTYSVVIQESENGSWHVPLAGEVVEESSRTWL
CITRQASCESDNKQLASVVEASEVSEPDQIAACCHSDSFTSQNGGSLNKCSGLAGKRKER
SPSPTPSHSSLQS*

Transcript Sequence

Transcript ID

Solyc06g074400.3.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *** W9R5G8_9ROSA)
Sequence

AGACAATTAAGCAATGTCTTATATTACTAAACCCTCAAAACTATACTCCAAAACCCAAAC
CCAGGTGTAGCTACTATTTCTCCGCCGCCGCAGCTGCAGCCGCAGCCGCCATTACTACCG
GAAAATGGACAAAGCCAAAAACAAGAAGAAAAACCTAACCCCAGAAGGTCAATTCCGGTC
AAGCCTAGATAATTGCTCCAAAACCAAAGATCTTTCTACTGCCATCTCCTTATACGAATC
CGCTATTTCAGATGCCTCAACAATCCGCCTTTCCAGTAACCATTTCAATTCTTTTCTTTA
CATCTGCTCCAACTCTTTTTCAGACCCATCAACGAAAAATGACGCTATTCAATTTGGGTT
TCGAGTTTTTGAACATATGGATTCGTGTAACATAACCCCTAATGAGGCAACTGTCACGGC
TGTTGCTCGGCTGGCGGCAGCAACTGATGACGGTGACAGAGCATTTGAGTTGGCTAAAGG
GGTGGGGAATTGTGGAAAGTTAAGGACTTATGGACCGGCTTTGTTTTGTTTTTGTAAGAT
GGGTGAGGCTGATAAGGCCTATCAAGTGGAAGAACACATGCGGTCTCTTGGTTTGCAACT
TGAGGAAGCTGAGCTTGCTGGGTTGTTAAAGGTGAGTGTGGAGAAAGAAAGGGAAGAGAA
GGTCTATCAGTATTTACATAAACTGAGAATGTCAATCAGGAGCGTAAGTGACTCGACAGC
AGAAATAATACAGAGTTGGTTTGGAGGGGAAATGGCAACTAAGGTGGGGTTATCCAACGG
GGATATGGATCAGGTGAAAGAAGTAATTTTACAAAATGGTGGAGGGTGGCATGGTCTCGG
ATGGCTTGGAAAGGGTAAATGGCTTGCACAGAGGTCCCAAATAGCTCCTGATGGGAGGTG
TCTATCTTGTGGCGAACAGTTGGTTTGTGTTGATATTGACAGATCAGAAACGGAACGATT
TGCAGAGTCAGTTGCTTCTTTGGCAATGGAAAGGGAAGTCCATTCCAATTTTAAGGAATT
TCAGGACTGGCTGGAAAAGCATTCAGATTATGATGCTGTAGTAGATGCAGCAAATGTTGG
GCTTTTTCAGCAGAATTTTGCTGCGGGAGGCTTTAGTATTGCACAGCAGTTTGTTGCTGT
TGTGAAGGAATTGCATAGCAGGAGCAACAAGTGGCCACTGGTCATATTACACAAAAAGCG
TGTTCGTACACTTCTTGAGGATGCTGGCTATAGAGAGTTGCTTGAAGAGTGGATAAATGA
AAAGATACTTTACGGAACACCCTTTGGATCCAATGATGACTGGTACTGGCTTTATGCAGC
AGTGAAATGTAAGTGTTTGCTCGTGACAAATGATGAAATGAGAGATCACATCTTTGAGCT
CCTGGGTAGTAGCTTTTTTGCCCGATGGAAAGAAAGACATCAGGTGAAGTACACTTTTGT
TAAAGGGGAGATTAAGCTTCTGATGCCACCCACATATTCTGTTGTCATTCAGGAATCCGA
GAACGGGTCGTGGCATGTGCCTCTGGCAGGTGAGGTAGTTGAGGAGTCTTCAAGGACTTG
GCTCTGCATCACCAGACAGGCTTCATGTGAATCTGACAATAAACAACTTGCAAGTGTAGT
AGAAGCTTCTGAAGTTAGTGAACCTGATCAAATTGCAGCCTGTTGCCATTCAGATAGTTT
TACAAGTCAGAATGGCGGCAGCTTAAATAAATGTTCTGGTTTGGCTGGTAAGAGGAAAGA
GAGGTCCCCTTCTCCAACTCCATCTCACTCCAGTTTACAATCTTGAAAATTTGAAGGTGA
TCCCTTTTCCAGAACCTTACAAACTGCATGCATTACCTGGTCAATTGCTCAGCTGTTTTG
TTGTGGAGCTTTTTTTTCTTTCTAAATTAATGATATGGCGGAGATTTACTGGTCGGCATG
TTGCTCAAATGAACACATTATGGGCTTCTGT