Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g074140.1.1
CDS Infomation

LOW QUALITY:U-box domain-containing family protein (AHRD V3.3 *** B9IIL0_POPTR)
Sequence

ATGGAAGAAGTAGAAATACCTAAATATTTTTTGTGTCCAATATCTCTCCAAATAATGAAA
GATCCGGTTACAACAGTTACTGGAATTACATACGATAGGGAAAATATTGAAACATGGTTA
TTGATGGCAGAGGAAAAGACATCTACGTGTCCGGTGACAAAACAAATTTTGCCTAGAGAC
ACCGCGTTGTTAACACCAAATCATATGTTAGGGAAATTTATACGATCGTGGACCATATGC
AATGCTGAAAAAGGGATTGAGCAAATTCCATCGCCTAAATATCCTCTCAATAAATCACAT
GTCATCAGGCTAATTCGTCAGGTGAAAAATCGCGATCTTTATTTAGAAGCTTTAAGGAAA
ATGGTGACTATGATAAGTGAGAATGAGGAAAATAGAAAGTGTTTAGATGAAGGTGGTGTG
ATCAAGGCTATGGTTTTATTTATACTGAGGAGTTTTAAAGAAGGGGAATTAGTTATGGGA
ATTGAAGAAGCTTTAAGGATTTTTCATTTTGTTTGGAGACCAACACATGAAAACAAACAA
CTTGTTAAGGAAAATCATGATCTAATTGAAGCTATTTTATGGATTTTGAAGAGTCGCGAA
GTGTGCTACGATAATAATCAAGTTGTAACATCAATCAAGACTCATGCAATGTTGGTACTG
AAAAATGTGATCTCAGTTTCAAGTACAAATGTTTTATCGAGTCTAACACCTGAATTTTTC
CAACAAATGTTGAATAGTTTGAGGAAAAACAATGTAAAATACATTTGTCAACAAGCCACA
AAAGCAGCGTTACATGTGCTAATAGATACTTGTCCAGGGGGACGAAACAGGCTGAAAATG
ATCGAATTAGGGGCTGTTTTCGAGCTAATTGAGCTCGAATTAAGCAACAATGAGAAAAGG
GTAAGTGAGTTAGTGTTTTCACTTTTGTCACATTTGTGTAGTTTAGCTGATGGAAGAGCA
GAGTTACTAAAACATGCAGCTGGAATTGCAATTGTTTCTAAAAAGATACTTAGGATTTCA
CCAGCAACAGATGAAAGTGCAATTCAAATTATTGGATTGATTGCCAAGTTTTCAGCTACA
AAAGAAGTGTTGATGGAAATGTTAAGAGTTGGGGGAGTGACAAAGTTATGTATGGTGATT
CAAGCAAATTGTGAAGCAAGTTTAAGGAAAAAAGCACTGGAAATATTAAGGGCACATAAT
AATGTTTGGAGCAACTCTCCATGTGTACAAATTTATTTTTTGACAAGATATCCTGGTCAA
TAG

Peptide Sequence

PEP ID

Solyc06g074140.1.1
PEP Infomation

LOW QUALITY:U-box domain-containing family protein (AHRD V3.3 *** B9IIL0_POPTR)
Sequence

MEEVEIPKYFLCPISLQIMKDPVTTVTGITYDRENIETWLLMAEEKTSTCPVTKQILPRD
TALLTPNHMLGKFIRSWTICNAEKGIEQIPSPKYPLNKSHVIRLIRQVKNRDLYLEALRK
MVTMISENEENRKCLDEGGVIKAMVLFILRSFKEGELVMGIEEALRIFHFVWRPTHENKQ
LVKENHDLIEAILWILKSREVCYDNNQVVTSIKTHAMLVLKNVISVSSTNVLSSLTPEFF
QQMLNSLRKNNVKYICQQATKAALHVLIDTCPGGRNRLKMIELGAVFELIELELSNNEKR
VSELVFSLLSHLCSLADGRAELLKHAAGIAIVSKKILRISPATDESAIQIIGLIAKFSAT
KEVLMEMLRVGGVTKLCMVIQANCEASLRKKALEILRAHNNVWSNSPCVQIYFLTRYPGQ
*

Transcript Sequence

Transcript ID

Solyc06g074140.1.1
Transcript Infomation

LOW QUALITY:U-box domain-containing family protein (AHRD V3.3 *** B9IIL0_POPTR)
Sequence

ATGGAAGAAGTAGAAATACCTAAATATTTTTTGTGTCCAATATCTCTCCAAATAATGAAA
GATCCGGTTACAACAGTTACTGGAATTACATACGATAGGGAAAATATTGAAACATGGTTA
TTGATGGCAGAGGAAAAGACATCTACGTGTCCGGTGACAAAACAAATTTTGCCTAGAGAC
ACCGCGTTGTTAACACCAAATCATATGTTAGGGAAATTTATACGATCGTGGACCATATGC
AATGCTGAAAAAGGGATTGAGCAAATTCCATCGCCTAAATATCCTCTCAATAAATCACAT
GTCATCAGGCTAATTCGTCAGGTGAAAAATCGCGATCTTTATTTAGAAGCTTTAAGGAAA
ATGGTGACTATGATAAGTGAGAATGAGGAAAATAGAAAGTGTTTAGATGAAGGTGGTGTG
ATCAAGGCTATGGTTTTATTTATACTGAGGAGTTTTAAAGAAGGGGAATTAGTTATGGGA
ATTGAAGAAGCTTTAAGGATTTTTCATTTTGTTTGGAGACCAACACATGAAAACAAACAA
CTTGTTAAGGAAAATCATGATCTAATTGAAGCTATTTTATGGATTTTGAAGAGTCGCGAA
GTGTGCTACGATAATAATCAAGTTGTAACATCAATCAAGACTCATGCAATGTTGGTACTG
AAAAATGTGATCTCAGTTTCAAGTACAAATGTTTTATCGAGTCTAACACCTGAATTTTTC
CAACAAATGTTGAATAGTTTGAGGAAAAACAATGTAAAATACATTTGTCAACAAGCCACA
AAAGCAGCGTTACATGTGCTAATAGATACTTGTCCAGGGGGACGAAACAGGCTGAAAATG
ATCGAATTAGGGGCTGTTTTCGAGCTAATTGAGCTCGAATTAAGCAACAATGAGAAAAGG
GTAAGTGAGTTAGTGTTTTCACTTTTGTCACATTTGTGTAGTTTAGCTGATGGAAGAGCA
GAGTTACTAAAACATGCAGCTGGAATTGCAATTGTTTCTAAAAAGATACTTAGGATTTCA
CCAGCAACAGATGAAAGTGCAATTCAAATTATTGGATTGATTGCCAAGTTTTCAGCTACA
AAAGAAGTGTTGATGGAAATGTTAAGAGTTGGGGGAGTGACAAAGTTATGTATGGTGATT
CAAGCAAATTGTGAAGCAAGTTTAAGGAAAAAAGCACTGGAAATATTAAGGGCACATAAT
AATGTTTGGAGCAACTCTCCATGTGTACAAATTTATTTTTTGACAAGATATCCTGGTCAA
TAG