Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g073500.3.1
CDS Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT3G59300.1)
Sequence

ATGTTCATCTCCGCGCCTTCATCATCAATCTCCATCGGTCCCTCGCAATGTTTCATATGT
CATGCTGATGGAGGTAGTTGCTCAGCATCATTAGGAGCTGCAAGCAGTTGGATCAAGCCA
TCATACGAGGTTCAGATATTCTCTGACCATTCAGGTATAAGTTTCAGGACTGAGAACCCT
TTCTTTGGAGCTGCACAATCGCATTGGCTTGCTGTAGGACACGAGAGTAGCCTTTCAAGA
ATTTCAGTTGCAGCAGATTACCCAGATTCTGTTCCTGATTCCCCTAACTATGTCCGCAAC
AGTGGCTATCACCCTCTTGAAGGAATGCGAGACCAGAGACGAGTTCGTGATACTGAACTC
ACAGCTGCTGAAATAGCAAGGACAACTGTTGAGGCTAATAACAATGCATTGTTGATATTC
CCTGGCACGGTTCATTGTGAACCTCACGAACAAGTGTCATGGGCAGAATTTCAGTACGTG
ATTGATGAATATGGAGACATATTCTTTGAAATTTATGATGACAAGAATATCTTGCGGAAT
CGGGATGCAAGTAATTCCGTGAATGCATTGATTGGAATGGAATTCTCCCAATACGAGAAG
AGGAGGGTAGAATCACCTGATGACATCAATTTAGCAGGTGATTCTGTTGATGATTCTAAT
TTCTTTGACGATTACTTCGAGGGCGAAAGTTCTGAGATGTACGACTATCAAGTTGATTGG
GGGATGCCAGATAGTTCTAGCCCGCTGCACCCAGTTTATTTTGCTAAGTGCTTGACTAAG
GCTGTTCACATGAAACATGCTAAGATGATGGATCATCCATCAAATGGCATTTCAATTTGG
GGACGCCTCAAGCCTGCCTTTCTGGAAGAAGAATATTACGTGCGAAGGCTCTTCAGTGGC
GATGAAGTTAGTGACGGCTCCACCTTGGATTGGAAAGATGGAGAAATTTTGAGCTTTAGT
TCAAGATATGACAAGAGCCGCACTTTGTCTTCTATCTACAGATTGGAAATCATGAGAGTC
GACCTATTTTCTGTGTATGGTGCTCAGTTAGCAGTAAATTTGTATGACTTCCATGATGCT
GAGCCTGACAGTCTTGTATACTCAGCTCCAGCAATTTTAGAGTGGTTTCGGCAGCAAGGA
ATAAGGTGCAAATATGCACTTAAAGCTCTTTGCAGAAAGAAAGGACTTCATGTTGAGAGA
GCAAATTTGATTGGAGTTGACAGTCTTGGCATGGATGTCAGAGTTCTCTCTGGAACAGAA
GTGTGGACACATCGTTTCCCCTTCAAAGTTAGGGCACATTCAGAGATTGCTGCTGAGAAA
CAGATCCGTCAGCTTCTTTTTCCCAGGTCTCGTCGTAAGAAGTTTAGGACTGCTGAAAGA
AGTGGAGATTTGGACTCACTTTAA

Peptide Sequence

PEP ID

Solyc06g073500.3.1
PEP Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT3G59300.1)
Sequence

MFISAPSSSISIGPSQCFICHADGGSCSASLGAASSWIKPSYEVQIFSDHSGISFRTENP
FFGAAQSHWLAVGHESSLSRISVAADYPDSVPDSPNYVRNSGYHPLEGMRDQRRVRDTEL
TAAEIARTTVEANNNALLIFPGTVHCEPHEQVSWAEFQYVIDEYGDIFFEIYDDKNILRN
RDASNSVNALIGMEFSQYEKRRVESPDDINLAGDSVDDSNFFDDYFEGESSEMYDYQVDW
GMPDSSSPLHPVYFAKCLTKAVHMKHAKMMDHPSNGISIWGRLKPAFLEEEYYVRRLFSG
DEVSDGSTLDWKDGEILSFSSRYDKSRTLSSIYRLEIMRVDLFSVYGAQLAVNLYDFHDA
EPDSLVYSAPAILEWFRQQGIRCKYALKALCRKKGLHVERANLIGVDSLGMDVRVLSGTE
VWTHRFPFKVRAHSEIAAEKQIRQLLFPRSRRKKFRTAERSGDLDSL*

Transcript Sequence

Transcript ID

Solyc06g073500.3.1
Transcript Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT3G59300.1)
Sequence

TGACTTTCACTATGAGTTTATAGCGACAAAAAGATCTTCGATTCAATTAACGTTTTCCTC
AGTTTCATATCATTAATACTCTGTTTCTTGATGTTCATCTCCGCGCCTTCATCATCAATC
TCCATCGGTCCCTCGCAATGTTTCATATGTCATGCTGATGGAGGTAGTTGCTCAGCATCA
TTAGGAGCTGCAAGCAGTTGGATCAAGCCATCATACGAGGTTCAGATATTCTCTGACCAT
TCAGGTATAAGTTTCAGGACTGAGAACCCTTTCTTTGGAGCTGCACAATCGCATTGGCTT
GCTGTAGGACACGAGAGTAGCCTTTCAAGAATTTCAGTTGCAGCAGATTACCCAGATTCT
GTTCCTGATTCCCCTAACTATGTCCGCAACAGTGGCTATCACCCTCTTGAAGGAATGCGA
GACCAGAGACGAGTTCGTGATACTGAACTCACAGCTGCTGAAATAGCAAGGACAACTGTT
GAGGCTAATAACAATGCATTGTTGATATTCCCTGGCACGGTTCATTGTGAACCTCACGAA
CAAGTGTCATGGGCAGAATTTCAGTACGTGATTGATGAATATGGAGACATATTCTTTGAA
ATTTATGATGACAAGAATATCTTGCGGAATCGGGATGCAAGTAATTCCGTGAATGCATTG
ATTGGAATGGAATTCTCCCAATACGAGAAGAGGAGGGTAGAATCACCTGATGACATCAAT
TTAGCAGGTGATTCTGTTGATGATTCTAATTTCTTTGACGATTACTTCGAGGGCGAAAGT
TCTGAGATGTACGACTATCAAGTTGATTGGGGGATGCCAGATAGTTCTAGCCCGCTGCAC
CCAGTTTATTTTGCTAAGTGCTTGACTAAGGCTGTTCACATGAAACATGCTAAGATGATG
GATCATCCATCAAATGGCATTTCAATTTGGGGACGCCTCAAGCCTGCCTTTCTGGAAGAA
GAATATTACGTGCGAAGGCTCTTCAGTGGCGATGAAGTTAGTGACGGCTCCACCTTGGAT
TGGAAAGATGGAGAAATTTTGAGCTTTAGTTCAAGATATGACAAGAGCCGCACTTTGTCT
TCTATCTACAGATTGGAAATCATGAGAGTCGACCTATTTTCTGTGTATGGTGCTCAGTTA
GCAGTAAATTTGTATGACTTCCATGATGCTGAGCCTGACAGTCTTGTATACTCAGCTCCA
GCAATTTTAGAGTGGTTTCGGCAGCAAGGAATAAGGTGCAAATATGCACTTAAAGCTCTT
TGCAGAAAGAAAGGACTTCATGTTGAGAGAGCAAATTTGATTGGAGTTGACAGTCTTGGC
ATGGATGTCAGAGTTCTCTCTGGAACAGAAGTGTGGACACATCGTTTCCCCTTCAAAGTT
AGGGCACATTCAGAGATTGCTGCTGAGAAACAGATCCGTCAGCTTCTTTTTCCCAGGTCT
CGTCGTAAGAAGTTTAGGACTGCTGAAAGAAGTGGAGATTTGGACTCACTTTAAGTTTAA
TCTTACTGTTTAGAAGCAGATGTTATGAATAAACATATATTATCTATATATGTTACCAAA
TAATTGTATGCAGTTAGTTCTCAGTTTTGATTTTCTTTAATGTCGTGATGGATTTGAATT
ATATATAGTGATCAGTTGAACCCCTTTTGATTAGATATACAAAGATAAAAAGAGAATAGT
TATAT