Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g072970.3.1
CDS Infomation

Zinc finger with UFM1-specific peptidase domain protein (AHRD V3.3 *** A0A0B2SPL0_GLYSO)
Sequence

ATGGCCGATTTCTCAGCTTGCCCTATCTGTAATCTCAGAGTTCTCACCTCTGAACTCGAA
AGGCACGCTAACAGTCACTTCGACGATGAAGACATTGACAAAGACTTCGAATTGGCTCAA
CAAATTGCCCTTGACCTTGCCTGTACCCCTTCAAGTCCACCTTATATCCCGGTTGATGAT
GACATGCAGTGTGAAACTAGTTCTCGAAAGGATCGCGAGTGTAGTATTTTGAAGTATGAG
GCCAAAAATTGCAATCATGGAGGGAAAGATATTGATGAAAAAGCAAGGATTTTATCTAGT
GTGTACCTTAATGAAACCCGACCTCAGATTGGACAAGGGTTAATGGATTTGTTGAAGAAC
TGTTTAGAGTTGGAGACTGAAAAGACCACCACTATTTTGTGTGTTAATGTTGATCATTTC
CAAAGCAGCCATTCGGAGGATTTTGGGTGGGGTTGTGGCTGGCGTAATATCCAGATGCTT
AGTTCTCACTTGCTTAAGCAACGACAAGAAGCAAGGGAGGTCTTGTATGGAGGTTCTGGG
TTTGTACCTGACATCCCTTCACTCCAAAGATGGCTTGAAATTGCTTGGAAAAGAGGCTTT
GATAAACAGGGATCAGAAGACTTTGATCGAGCAATTTATGGCAAAAGAAATTGGATCGGA
ACTACAGAATGTGCTACGCTCTTCCGTTCATTTGGCCTTCGTGCCAGGATAGTGGACTTT
GTAAGCCGGGAGATAGACATTAGGTCAAGTGGAGTTGGTAAATGTGTGGGCAACATGACA
CCACAAGTTTATGGACCAATGGATGGATATCTGTCCAAAGGGAAAAATTCTGTATCCAAG
GCTGTTCCGATTTCGTATGATGTAAAGGCTAAGCCTAAGGTCCAGCAGGCACTCATTGAT
TGGGTGTGGAATTACTTTTCTGACAATAAATCCAGGAAATACGGCAATCATGGTATCCTA
GTCAGTCAAAAAGCGCCTTTGTACTTCCAGCATGATGGCCATTCAAGAACCATTGTTGGG
ATTCAAATGAAATGCCAGAGAAATGGACCGATGCAGTACAATCTATTGATCTTAGATCCA
GGTCATACAACAGAATCCCTGGCAAAATCTCTTAAAGGAAACTTCGGTTGGCAAAAGCTA
ATAAAAAGAGGTGTACACACTCTGAAGAAGCCATTATATCAGTTATGTTTTCTTGATCCT
GGAATTGCTTCTGGGGAGGAGATTGAGAGCCTAAAGAATCTACACAGCATCCGTGTTGAA
GCTTCGTCCTAA

Peptide Sequence

PEP ID

Solyc06g072970.3.1
PEP Infomation

Zinc finger with UFM1-specific peptidase domain protein (AHRD V3.3 *** A0A0B2SPL0_GLYSO)
Sequence

MADFSACPICNLRVLTSELERHANSHFDDEDIDKDFELAQQIALDLACTPSSPPYIPVDD
DMQCETSSRKDRECSILKYEAKNCNHGGKDIDEKARILSSVYLNETRPQIGQGLMDLLKN
CLELETEKTTTILCVNVDHFQSSHSEDFGWGCGWRNIQMLSSHLLKQRQEAREVLYGGSG
FVPDIPSLQRWLEIAWKRGFDKQGSEDFDRAIYGKRNWIGTTECATLFRSFGLRARIVDF
VSREIDIRSSGVGKCVGNMTPQVYGPMDGYLSKGKNSVSKAVPISYDVKAKPKVQQALID
WVWNYFSDNKSRKYGNHGILVSQKAPLYFQHDGHSRTIVGIQMKCQRNGPMQYNLLILDP
GHTTESLAKSLKGNFGWQKLIKRGVHTLKKPLYQLCFLDPGIASGEEIESLKNLHSIRVE
ASS*

Transcript Sequence

Transcript ID

Solyc06g072970.3.1
Transcript Infomation

Zinc finger with UFM1-specific peptidase domain protein (AHRD V3.3 *** A0A0B2SPL0_GLYSO)
Sequence

TTTTTTCAAAAAATTCAAAATTACGTTGCCCCATAGGGTTTATAAAAAGAGGAAAACTGG
GAAAGAGAAGAGTTTTCCCTCCACAATCCTGCCTTTTCACGGAGCTCGATAATGGCCGAT
TTCTCAGCTTGCCCTATCTGTAATCTCAGAGTTCTCACCTCTGAACTCGAAAGGCACGCT
AACAGTCACTTCGACGATGAAGACATTGACAAAGACTTCGAATTGGCTCAACAAATTGCC
CTTGACCTTGCCTGTACCCCTTCAAGTCCACCTTATATCCCGGTTGATGATGACATGCAG
TGTGAAACTAGTTCTCGAAAGGATCGCGAGTGTAGTATTTTGAAGTATGAGGCCAAAAAT
TGCAATCATGGAGGGAAAGATATTGATGAAAAAGCAAGGATTTTATCTAGTGTGTACCTT
AATGAAACCCGACCTCAGATTGGACAAGGGTTAATGGATTTGTTGAAGAACTGTTTAGAG
TTGGAGACTGAAAAGACCACCACTATTTTGTGTGTTAATGTTGATCATTTCCAAAGCAGC
CATTCGGAGGATTTTGGGTGGGGTTGTGGCTGGCGTAATATCCAGATGCTTAGTTCTCAC
TTGCTTAAGCAACGACAAGAAGCAAGGGAGGTCTTGTATGGAGGTTCTGGGTTTGTACCT
GACATCCCTTCACTCCAAAGATGGCTTGAAATTGCTTGGAAAAGAGGCTTTGATAAACAG
GGATCAGAAGACTTTGATCGAGCAATTTATGGCAAAAGAAATTGGATCGGAACTACAGAA
TGTGCTACGCTCTTCCGTTCATTTGGCCTTCGTGCCAGGATAGTGGACTTTGTAAGCCGG
GAGATAGACATTAGGTCAAGTGGAGTTGGTAAATGTGTGGGCAACATGACACCACAAGTT
TATGGACCAATGGATGGATATCTGTCCAAAGGGAAAAATTCTGTATCCAAGGCTGTTCCG
ATTTCGTATGATGTAAAGGCTAAGCCTAAGGTCCAGCAGGCACTCATTGATTGGGTGTGG
AATTACTTTTCTGACAATAAATCCAGGAAATACGGCAATCATGGTATCCTAGTCAGTCAA
AAAGCGCCTTTGTACTTCCAGCATGATGGCCATTCAAGAACCATTGTTGGGATTCAAATG
AAATGCCAGAGAAATGGACCGATGCAGTACAATCTATTGATCTTAGATCCAGGTCATACA
ACAGAATCCCTGGCAAAATCTCTTAAAGGAAACTTCGGTTGGCAAAAGCTAATAAAAAGA
GGTGTACACACTCTGAAGAAGCCATTATATCAGTTATGTTTTCTTGATCCTGGAATTGCT
TCTGGGGAGGAGATTGAGAGCCTAAAGAATCTACACAGCATCCGTGTTGAAGCTTCGTCC
TAAAATCTCAAGGATGTATAATATGCAACTAGAATTTCAGACAGTTATTTTAAAGGGGTG
CTCTTAGCTTGTATGTATCAGTTCTGTGTACAGTCATTTTGGTGATGAATATAGGTTAAC
TGTTTTACCATATATTTTCTGCAAATATTAGCTACTGTGACACTAAGCTCCTGTATATAT
TAAAATGAGAAAAAGATTTGGAGTTGGAGGTGTGTGTTAAGGTCCCTAGTACTGGATCAG
TCAATGGACTATTAAAGAGAAAGTCAGGCCGAACACACAGGTTTGACCTTGTTTAGTTCC
TTGACTTGGCTATGATTGCTGAATTTTGGCAATACATTGAAGGAATTGCAGACATTGGAA
CTCATCAGAGAGTTTCCGATCTCTTCTATAGGGAAATTCATCCTGCTCTCAGATAGAGGG
GTACAGAGTGAGTTAACTCACTGGTTGAATAGCAAGAGTCCTAAATTAATACATATAGGA
AGAGTCCAAATTCACCTAGGAAAGTTCTAATAAGTGTTGGCAGAGGTGCTTAA