Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g072710.3.1
CDS Infomation

Sigma factor (AHRD V3.3 *** Q9SLX3_TOBAC)
Sequence

ATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTC
TATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAAT
CCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCC
AATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCAT
TCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAA
GAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAAT
CTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAG
ATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGA
GTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTT
GTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAA
GAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTAT
TTAGAAGAACAGAAGGCCAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAA
CTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCC
TTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGA
TACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGGGGGACTTATTGGACTACTT
CGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGG
TGGATTCGTCAGGGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCC
ATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGT
GGAATAACTCCATCAATCGAAAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTC
AGAAATGCAACTGAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCT
TTAAATGGCCTTCCTGGAGCAACACTTCATAGCTACATTGCTGACAATCGCCTGGAGAAC
AACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGATGAAGTAAACAATCTCATTTCT
TCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAG
TGCCTTACCTGGGAGGATATTAGTAGAAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAA
GTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCA
ATGTTGGTTAAACATTGA

Peptide Sequence

PEP ID

Solyc06g072710.3.1
PEP Infomation

Sigma factor (AHRD V3.3 *** Q9SLX3_TOBAC)
Sequence

MAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVS
NRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWN
LSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSV
VGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQ
LAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLL
RGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDS
GITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLEN
NPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQ
VGLVALEKLKHAARKKQLDAMLVKH*

Transcript Sequence

Transcript ID

Solyc06g072710.3.1
Transcript Infomation

Sigma factor (AHRD V3.3 *** Q9SLX3_TOBAC)
Sequence

AGGGAGTACGTGTATCATTGAGAAACCAAAGAAATAAGCCTTGCTGGCTGTTGCCACACG
AACCCAGCACCAAATATCTCTCCAGCCAATGGCTATTAACTTCTCTGCTGCACTCAATAT
CCAAAATCACAACCCCCACTGCCACACTTGGTTATTTTCCACCAGTACTTTTCATCATTC
TAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTC
TTCATCAATCGTCATTGCTAAATTCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCA
ATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAA
CACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGT
TATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGAC
TGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGAT
CAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATC
CGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAAT
GGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGT
TCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAAC
ATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTC
AGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGC
TTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACA
ACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAA
GGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGC
CAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAA
GATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACT
TGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTAC
TGAAATGGCTGACCTCATTCAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATT
TGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGGCGT
TTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAG
ACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAAT
CGAAAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGC
AAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGG
AGCAACACTTCATAGCTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGT
TGATGGATGGGCGCTCAAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACG
CGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGA
TATTAGTAGAAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACT
TGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTG
AGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCA
TCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACC
ATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAG
ATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAA
ATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAA
TGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACT
TTGTACACAATTTTAGTGGTAGTAGAAGAAAATATTTAAAATAATG