Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g071680.3.1
CDS Infomation

Histone deacetylase (AHRD V3.3 *** K4C8P0_SOLLC)
Sequence

ATGGACTCCTCCACCGTAGACGGCGGCGCATCGCTTCCATCAACCGGAACCGACGCTAGG
AAGCGTCGTGTCTCTTACTTCTATGAGCCAACCATCGGCGATTATTACTACGGCCAAGGT
CATCCGATGAAGCCGCACCGTATCAGAATGGCCCACAATCTCATCGTAAACTACTACCTA
CACAGGCGTATGGAAATCAGTCGTCCTTTTCCGGCGGGAGAGGATGATATCCGACGTTTT
CACTCGCCGGATTATGTTGACTTCCTTGCTACCGTTTCACCGGAGACTCTTCATGACCAT
ACACATTCACGTCATCTCAAACGGTTTAATGTTGGTGAGGATTGTCCTGTTTTCGATGGG
CTTTTTGGGTTTTGTCAAGCTTCTGCTGGTGGATCTATTGGGGCTGCGGTTAAGCTTAAT
CGGCAGGATGCTGATATAACGATCAACTGGGCTGGTGGTCTGCACCATGCAAAGAAAAGT
GAAGCTTCTGGTTTTTGCTATGTGAATGATATTGTTCTTGGTATTCTTGAGCTCCTCAAA
GTCCACAAGCGTGTATTGTACATAGACATTGATATTCACCATGGTGATGGTGTTGAGGAG
GCTTTTTTCACCACAGATAGAGTCATGACAGTATCTTTTCATAAGTTTGGGGATTTCTTT
CCTGGTACGGGGCACATCAAAGACATTGGTGCAAATCAGGGGAAGTACTATGCCCTAAAT
GTCCCATTGCATGATGGGATGGATGACGATAGTTTTGGTAGACTATTTCGTCCCACAATA
CAAAAAGTCATGGAGGTCTACCAACCTGAGGCTGTTGTTCTTCAATGTGGGGCTGATTCA
CTGGCTGGAGACAGGTTGGGTTGCTTCAACTTGTCTGTCAAGGGCCATGCCGCTTGCCTT
AGGTACCTCAGATCCTTCAATGTCCCTCTGATGGTATTGGGTGGTGGAGGTTATACTATA
AGAAATGTCGCTAGGTGCTGGTGCTATGAGACAGCAGTTGCAGTTGGGGTAGAACCTGAA
AACAAGTTGCCTTACAACGAGTATTATGAATATTTTGGCCCAGATTATACTCTTCATGTT
GAACCAATTCCCATGGAGAATCTAAATTCACCTAGGGATCTGGAGAAGATGAGGAACATA
TTGCTTGAGCAAATCTCTCAGTTGCCTCATGCACCTAGTGTGCCATTTCAGACCACTCCT
TCTACAACAGAAGTCCCAGAGGAGAAAGAGGAAAATATGGATCGAAGGCCTAAACCACGG
ATATGGAATGGTGATGGTTATGAGTCTGATGCTGATGAAGACGAGAAACCTAGACAGCGA
AGTTCAGATAGTAATCTTACTCCAGTGGAATCATCTGACATGAGGGATGTGGACGACCAA
GCCAATGCAGATGACATGGTTGATGATCATCCCTAG

Peptide Sequence

PEP ID

Solyc06g071680.3.1
PEP Infomation

Histone deacetylase (AHRD V3.3 *** K4C8P0_SOLLC)
Sequence

MDSSTVDGGASLPSTGTDARKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVNYYL
HRRMEISRPFPAGEDDIRRFHSPDYVDFLATVSPETLHDHTHSRHLKRFNVGEDCPVFDG
LFGFCQASAGGSIGAAVKLNRQDADITINWAGGLHHAKKSEASGFCYVNDIVLGILELLK
VHKRVLYIDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIKDIGANQGKYYALN
VPLHDGMDDDSFGRLFRPTIQKVMEVYQPEAVVLQCGADSLAGDRLGCFNLSVKGHAACL
RYLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNEYYEYFGPDYTLHV
EPIPMENLNSPRDLEKMRNILLEQISQLPHAPSVPFQTTPSTTEVPEEKEENMDRRPKPR
IWNGDGYESDADEDEKPRQRSSDSNLTPVESSDMRDVDDQANADDMVDDHP*

Transcript Sequence

Transcript ID

Solyc06g071680.3.1
Transcript Infomation

Histone deacetylase (AHRD V3.3 *** K4C8P0_SOLLC)
Sequence

TAATTTTTTTAGATCTATAAAAGGAGAGTAATTTTCTCTTTTCATTTTCCTGGACTCAAT
ACAGACTGCCGAGTCTCTCGCAAAAATCCCAAATTTCATTTTCACTCTCACTCCGAACCC
AAAAATCAGTGGCTAATGGACTCCTCCACCGTAGACGGCGGCGCATCGCTTCCATCAACC
GGAACCGACGCTAGGAAGCGTCGTGTCTCTTACTTCTATGAGCCAACCATCGGCGATTAT
TACTACGGCCAAGGTCATCCGATGAAGCCGCACCGTATCAGAATGGCCCACAATCTCATC
GTAAACTACTACCTACACAGGCGTATGGAAATCAGTCGTCCTTTTCCGGCGGGAGAGGAT
GATATCCGACGTTTTCACTCGCCGGATTATGTTGACTTCCTTGCTACCGTTTCACCGGAG
ACTCTTCATGACCATACACATTCACGTCATCTCAAACGGTTTAATGTTGGTGAGGATTGT
CCTGTTTTCGATGGGCTTTTTGGGTTTTGTCAAGCTTCTGCTGGTGGATCTATTGGGGCT
GCGGTTAAGCTTAATCGGCAGGATGCTGATATAACGATCAACTGGGCTGGTGGTCTGCAC
CATGCAAAGAAAAGTGAAGCTTCTGGTTTTTGCTATGTGAATGATATTGTTCTTGGTATT
CTTGAGCTCCTCAAAGTCCACAAGCGTGTATTGTACATAGACATTGATATTCACCATGGT
GATGGTGTTGAGGAGGCTTTTTTCACCACAGATAGAGTCATGACAGTATCTTTTCATAAG
TTTGGGGATTTCTTTCCTGGTACGGGGCACATCAAAGACATTGGTGCAAATCAGGGGAAG
TACTATGCCCTAAATGTCCCATTGCATGATGGGATGGATGACGATAGTTTTGGTAGACTA
TTTCGTCCCACAATACAAAAAGTCATGGAGGTCTACCAACCTGAGGCTGTTGTTCTTCAA
TGTGGGGCTGATTCACTGGCTGGAGACAGGTTGGGTTGCTTCAACTTGTCTGTCAAGGGC
CATGCCGCTTGCCTTAGGTACCTCAGATCCTTCAATGTCCCTCTGATGGTATTGGGTGGT
GGAGGTTATACTATAAGAAATGTCGCTAGGTGCTGGTGCTATGAGACAGCAGTTGCAGTT
GGGGTAGAACCTGAAAACAAGTTGCCTTACAACGAGTATTATGAATATTTTGGCCCAGAT
TATACTCTTCATGTTGAACCAATTCCCATGGAGAATCTAAATTCACCTAGGGATCTGGAG
AAGATGAGGAACATATTGCTTGAGCAAATCTCTCAGTTGCCTCATGCACCTAGTGTGCCA
TTTCAGACCACTCCTTCTACAACAGAAGTCCCAGAGGAGAAAGAGGAAAATATGGATCGA
AGGCCTAAACCACGGATATGGAATGGTGATGGTTATGAGTCTGATGCTGATGAAGACGAG
AAACCTAGACAGCGAAGTTCAGATAGTAATCTTACTCCAGTGGAATCATCTGACATGAGG
GATGTGGACGACCAAGCCAATGCAGATGACATGGTTGATGATCATCCCTAGTTCAAAGCT
CTTCTACATCGTCTCAAAATGCAATGACTGATACTATTTTTGGGTCGGAAGTAACAAGCC
TTGCTATTTGACCTTTCGCCTCTCATGAGCAATTGTTTTGATGTCTCTTTTGCTGAAAAT
GGAACTAGAAAAATGAGTTGTTATAGTAGATTGTAGTTAGTTGGATATAGGCTAGTGATT
GATGAATGAGAGCACAATGCTGTCTCTCGTAAATGGACCGGTGCACCACAAAGTAGACTT
TGTTCTTATGGATACTGCTTATTACATACAAATATTATCAGTGTTCTGCAAGAGTTATCT
GTGCAGTTCTGTGGATTTATCCATGTACTTTTGAGACAGTGGTTGTTTCATTTCTTCTTT
GAACAAGATTATTGTTCATCTTTTTGGTTCCTTAAATGGAGGGCGCTGATTGCTGATTAG
GCTTCCAAGTACTTATCA