Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g071030.3.1
CDS Infomation

isochorismate synthase
Sequence

ATGGCTGTAGGTGTAAGGCACTGCACCATAAGGTTCATGGAACTTGAATCATCATCACTA
ATGAAATGTTTGCTCTTGTCTTCACCTCTATATAGAAAGCAATCAGTTCACTTCTCCAAC
TCTTCTACTCAAAGATATAATCAATGTTGTTCATTGTCGATGAATGGATGCCAAGGCGAT
TCAAGAGCTCCTATTGGAATCGTTGAAACTCGAACTTTGCCTGCAGTTTCTAGCCCTGCA
TTGGCCATGGAACGTCTCAATTCTGCCATCTCCGATATGATTAAGTCCGATCCTCCGCCT
TACGATTCCGGCATTATTCGCCTTGAGGTGCCAATTGAAGAGCAGATTGAATCACTTGAG
TGGCTTCATGCCCAGAACCATCTCCTCCTCCCTCGCTGCTTCTTCTCCGGTCGAAGAGTT
GCTTCTGAAATGTGCATCAATGGAGCTTCTTCTCATTCTAAATTGGTCAGTGTAGCTGGT
GTCGGTTCAGCTGTCTTCTTTACTCATTTACGTCCCTTCTCATTAGACGATTGGCGTGCT
ATAAGAAGGTTCCTCTCCAAGAAATGTCCACTAATTCGTGCTTATGGGGCAATCCGATTT
GATGCAACAGCCAATATAGCTTCTGAATGGAGTGCTTTTGGCTCATTTTATTTCATGGTT
CCTCAGGTTGAGTTTGATGAGCTTGAAGGAAGTTCAATTATTGCTGCAACTATTGCATGG
GACAATGCTGCCTCATGGACATACCAGAGGGCAATAGATGCACTTCAGGCCACAATATGG
CAGCTTTCCTCCGTTCTTATAACAGTGCAGAAGAAAAATCCCCATTCGCATATACTTGCC
AATACACATGTGCCGGGTAAAGCGTCTTGGGACCATGCGGTTAACCGTGCTTTGCAAATA
ATAAGCAGAAATGACCCTGTACTGATCAAGGTGGTACTTGCTCGTAGCACCAGAGTTGTG
ACAGCTGCAGATATTGATCCACTAACATGGCTGGCTTGCTTAAAGGTTGAAGGAGAAAAT
GCATATCAGTTCTGTTTGCAACCTCCCCATTCGCCGGCATTCATTGGAAACACTCCAGAG
CAGCTATTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCTGGAACACGGGCT
AGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACAGGATTTACTATCCAGCGCTAAG
GACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTGGAGGCTGTGTGT
TCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGAGTTCAACATCTT
TACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAGTTTAAGATATTGTCATCC
GTGCACCCTACTCCAGCAGTTTGTGGGTATCCTACAGAAGATGCACGGGCTTTTATTTCA
GAAACTGAAATGTTTGACCGAGGAATGTATGCTGGTCCTGTTGGTTGGTTTGGAGGGGAA
GAGAGTGAATTTGCGGTTGGAATAAGGTCGGCTTTGGTTGAAAAGGGTCTTGGCGCACTA
ATTTATGCGGGAACTGGGATAGTGGAAGGAAGTGATTCATCTCTAGAATGGGAAGAGCTA
GAGCTAAAGACTTCACAGTTCACCAAATTGATGAAACTTGAGGCACCTCTTTTGACTAGA
GGACAAAGTAGGATTATCAATCAGAATCAGAAAGGTTTGTCATGCCTGCCGCATCGTATT
TAG

Peptide Sequence

PEP ID

Solyc06g071030.3.1
PEP Infomation

isochorismate synthase
Sequence

MAVGVRHCTIRFMELESSSLMKCLLLSSPLYRKQSVHFSNSSTQRYNQCCSLSMNGCQGD
SRAPIGIVETRTLPAVSSPALAMERLNSAISDMIKSDPPPYDSGIIRLEVPIEEQIESLE
WLHAQNHLLLPRCFFSGRRVASEMCINGASSHSKLVSVAGVGSAVFFTHLRPFSLDDWRA
IRRFLSKKCPLIRAYGAIRFDATANIASEWSAFGSFYFMVPQVEFDELEGSSIIAATIAW
DNAASWTYQRAIDALQATIWQLSSVLITVQKKNPHSHILANTHVPGKASWDHAVNRALQI
ISRNDPVLIKVVLARSTRVVTAADIDPLTWLACLKVEGENAYQFCLQPPHSPAFIGNTPE
QLFHRDRLSICSEALAGTRARGGSELLDLNIEQDLLSSAKDHNEFAIVRECIRRRLEAVC
SSVIIEPKKAIRKFTRVQHLYARLRGRLQAEDDEFKILSSVHPTPAVCGYPTEDARAFIS
ETEMFDRGMYAGPVGWFGGEESEFAVGIRSALVEKGLGALIYAGTGIVEGSDSSLEWEEL
ELKTSQFTKLMKLEAPLLTRGQSRIINQNQKGLSCLPHRI*

Transcript Sequence

Transcript ID

Solyc06g071030.3.1
Transcript Infomation

isochorismate synthase
Sequence

ACTAATTAAAATTTTAAGTTTTCACTCATGTCATTAAATATGGATGGAGAACGTATTAAG
TAGAGGAAGAGATGAGATGGCACACAAGGACAATAGAGTTTTCACTCCTCCCATCTATTT
GTGGTCTTGGAATTCAACTTTATAGCGGCTAAGATGTGTAATGGTGGCCCATTTCTTACA
TCATCTATGGCAAATAATAAACTTCTGCGTATATAAAGTAAAGACCATACTTGTTTATTG
GGTTTAATTTTGGGTGTACAAATTGGTTACATTCAAATTAAAAACAATATCGATTCCCAA
ACTTCCATCTTAATGGCTGTAGGTGTAAGGCACTGCACCATAAGGTTCATGGAACTTGAA
TCATCATCACTAATGAAATGTTTGCTCTTGTCTTCACCTCTATATAGAAAGCAATCAGTT
CACTTCTCCAACTCTTCTACTCAAAGATATAATCAATGTTGTTCATTGTCGATGAATGGA
TGCCAAGGCGATTCAAGAGCTCCTATTGGAATCGTTGAAACTCGAACTTTGCCTGCAGTT
TCTAGCCCTGCATTGGCCATGGAACGTCTCAATTCTGCCATCTCCGATATGATTAAGTCC
GATCCTCCGCCTTACGATTCCGGCATTATTCGCCTTGAGGTGCCAATTGAAGAGCAGATT
GAATCACTTGAGTGGCTTCATGCCCAGAACCATCTCCTCCTCCCTCGCTGCTTCTTCTCC
GGTCGAAGAGTTGCTTCTGAAATGTGCATCAATGGAGCTTCTTCTCATTCTAAATTGGTC
AGTGTAGCTGGTGTCGGTTCAGCTGTCTTCTTTACTCATTTACGTCCCTTCTCATTAGAC
GATTGGCGTGCTATAAGAAGGTTCCTCTCCAAGAAATGTCCACTAATTCGTGCTTATGGG
GCAATCCGATTTGATGCAACAGCCAATATAGCTTCTGAATGGAGTGCTTTTGGCTCATTT
TATTTCATGGTTCCTCAGGTTGAGTTTGATGAGCTTGAAGGAAGTTCAATTATTGCTGCA
ACTATTGCATGGGACAATGCTGCCTCATGGACATACCAGAGGGCAATAGATGCACTTCAG
GCCACAATATGGCAGCTTTCCTCCGTTCTTATAACAGTGCAGAAGAAAAATCCCCATTCG
CATATACTTGCCAATACACATGTGCCGGGTAAAGCGTCTTGGGACCATGCGGTTAACCGT
GCTTTGCAAATAATAAGCAGAAATGACCCTGTACTGATCAAGGTGGTACTTGCTCGTAGC
ACCAGAGTTGTGACAGCTGCAGATATTGATCCACTAACATGGCTGGCTTGCTTAAAGGTT
GAAGGAGAAAATGCATATCAGTTCTGTTTGCAACCTCCCCATTCGCCGGCATTCATTGGA
AACACTCCAGAGCAGCTATTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCT
GGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACAGGATTTACTA
TCCAGCGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTG
GAGGCTGTGTGTTCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGA
GTTCAACATCTTTACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAGTTTAAG
ATATTGTCATCCGTGCACCCTACTCCAGCAGTTTGTGGGTATCCTACAGAAGATGCACGG
GCTTTTATTTCAGAAACTGAAATGTTTGACCGAGGAATGTATGCTGGTCCTGTTGGTTGG
TTTGGAGGGGAAGAGAGTGAATTTGCGGTTGGAATAAGGTCGGCTTTGGTTGAAAAGGGT
CTTGGCGCACTAATTTATGCGGGAACTGGGATAGTGGAAGGAAGTGATTCATCTCTAGAA
TGGGAAGAGCTAGAGCTAAAGACTTCACAGTTCACCAAATTGATGAAACTTGAGGCACCT
CTTTTGACTAGAGGACAAAGTAGGATTATCAATCAGAATCAGAAAGGTTTGTCATGCCTG
CCGCATCGTATTTAG