Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g069360.3.1
CDS Infomation

RING/U-box protein (AHRD V3.3 *-* AT3G05670.3)
Sequence

ATGGCGTCTGACGAGGAAGATATCGGGGTTCCGGAAATGCATCCAAACAAACGTGTCAAA
ACCCTAACCCTGAGTTCACCTGAATCATCCCCGTCCTCATCTGACAAAGGCAAATCGAAG
CTTGAACTTTCGAATTTAGAGACGGAACAGGATTGCTGTGGAATTTGCTTGACTGAAACT
GGACATGGAACCACAATTATCAGAGGTGTTATCGATTGTTGCAACCATTACTTCTGCTTT
GTATGTATCATAGAGTGGTCTAAAGTTGAGTCCAGATGCCCCATGTGTAAACGCCGGTTC
TCCATCATCCGCCGCCCTGCTAGACCTCCCATTTTCCCTTCCGAACGCGTTGTCAATGTT
CCTGTCCGCGATCAGGTTTATCATTGCCATGGAAATGCAACAACTGGACCACGGGATCTG
TATGCAGAAGTCCAATGTAACGTGTGCCATAGCACGGCTGATGACGTTCTCCTGCTGTTG
TGCGACCTTTGTGACACTGCTTATCATACTTATTGTGTTGGCCTTGGTGCTACTGTTCCT
GAGGGTGATTGGTTTTGTGCAGACTGCGCCCTTCTGAAGGCTGAACAGGCCCAGAGTGAC
ATCAAAACTGATTGCTGTACCCAAACTAGTTTCGGTGAACCCCAATCAGCAGAATCAACA
AGACAAGTATCTATATATGATATTGTACGAGAGTCTCGTGTTGATGGCGTCGAGAGCACT
CCAACTGGTGCTTTGGATGCTTCCGACAGTTCATCTCGTATTGAATCTAGAAGGCAAAGT
ACTTCTCGAAGCAGCTCAATTAGGTTAGGTTCTGTAGGAAATAATGGTGTTGCAGGACGC
ACCACTAAGTTCAATGCCAGAACCCTGGGGCATTGCCGCAATGTCCATGATAGGATACGC
ATATTGCGTGAACATTGGAATGGTTTTCGAAGTGGATCCTTGAGGTTTCCTTCTAGCAAA
GTGACTAATGCTAGTAGTGCTAAACTAAAACCAGTGCGTGGTAGCAATTCTGCTGAACGG
CCTTTAGTATGTTGCTCGAGTCAACCAAGGACTTCTCAGCCTTCCAATCAAAATAGACCT
GACAGTAAAGGGCCAACAGAGGTGAAGAAGGCGTGGAAAATGATGAATATGGCTAAGGCA
ATAGAACAAAATAGTGTCGGGAACAAAAGTTCTGTTCAGGCCTCAAAACATTCAGTTCAG
AAGAATACTAGCTACAAAGAAGCAAGTGAATCGAGCTCAACGTCTATCAAAATGAAGATC
GAACAGCATCGGCCTCCGTATATTCAAAATGTTGGTCCAGGTAGTCATTCCGAGAATGAT
GTTTGTAAGTTGGACATTGGATCAAAAGGTGCTTCAGGTGTATATAAAGGCTCTTCAATG
TCATGCAGACCATTATATAGTGAACTTGTATCTTCGAGGGAGTCTCAGAATTCACTTCAG
CCATATGTTTGTGATGCGAACAATGGACTACCATGGAAGAATAAGTCGTGTGCTGGGGCC
ACACATTTGAGTTCTTCTATCAGGTTGACATCAATTTCTACTACTGTAGGTCATGAGAAA
GAGATCAGTTCTTCCTCGAATAGCATTGTGAATCCTCAGGAGAAACTGAAGGTCGAAAAG
AGTGTAACTAAGAGAAGGGTTGAGGTGAAATCTGATGCTAAGACTGAGATCCAATCTCTT
GTGAAGCTCAACCTAAAAATCTTGTGCGGGGATAAAAAGCTCGAAGTTGACACATTTAAG
CAAGTTGCAAGAGTAGCTACTCATTCCATCTTAGCTGCTTGTGGTCTGGAGCACAAAACA
CATGGTATTTCTTCCCTTCCAGAATGTGTGTGTGTCCACAGCGAGGAAGATAAGGAACTC
AGCAGATCTACTTTAATGCCTAAATCGTGCCGAGAATGTTTCTTCTTATTTGTGAAGAAT
GTGGTGAATACTGTACTGTTAGACAAGAGATGA

Peptide Sequence

PEP ID

Solyc06g069360.3.1
PEP Infomation

RING/U-box protein (AHRD V3.3 *-* AT3G05670.3)
Sequence

MASDEEDIGVPEMHPNKRVKTLTLSSPESSPSSSDKGKSKLELSNLETEQDCCGICLTET
GHGTTIIRGVIDCCNHYFCFVCIIEWSKVESRCPMCKRRFSIIRRPARPPIFPSERVVNV
PVRDQVYHCHGNATTGPRDLYAEVQCNVCHSTADDVLLLLCDLCDTAYHTYCVGLGATVP
EGDWFCADCALLKAEQAQSDIKTDCCTQTSFGEPQSAESTRQVSIYDIVRESRVDGVEST
PTGALDASDSSSRIESRRQSTSRSSSIRLGSVGNNGVAGRTTKFNARTLGHCRNVHDRIR
ILREHWNGFRSGSLRFPSSKVTNASSAKLKPVRGSNSAERPLVCCSSQPRTSQPSNQNRP
DSKGPTEVKKAWKMMNMAKAIEQNSVGNKSSVQASKHSVQKNTSYKEASESSSTSIKMKI
EQHRPPYIQNVGPGSHSENDVCKLDIGSKGASGVYKGSSMSCRPLYSELVSSRESQNSLQ
PYVCDANNGLPWKNKSCAGATHLSSSIRLTSISTTVGHEKEISSSSNSIVNPQEKLKVEK
SVTKRRVEVKSDAKTEIQSLVKLNLKILCGDKKLEVDTFKQVARVATHSILAACGLEHKT
HGISSLPECVCVHSEEDKELSRSTLMPKSCRECFFLFVKNVVNTVLLDKR*

Transcript Sequence

Transcript ID

Solyc06g069360.3.1
Transcript Infomation

RING/U-box protein (AHRD V3.3 *-* AT3G05670.3)
Sequence

TTATATTTTGGGCTTGGGCCTCTTGTGCATGTTTAGTTAGATTTGAGTCCACGGGCCCAA
AGTTTTGCTCCATCAAGTGAAAAGATCATTTTATCTGTTTTCTTGTTAATGGTGAAAAAA
ACAACCAACGACGGGAACAATTCCGGCGATTCCAATACTCCGGCTAGCTAGAATTCTTGG
ATATGGCGTCTGACGAGGAAGATATCGGGGTTCCGGAAATGCATCCAAACAAACGTGTCA
AAACCCTAACCCTGAGTTCACCTGAATCATCCCCGTCCTCATCTGACAAAGGCAAATCGA
AGCTTGAACTTTCGAATTTAGAGACGGAACAGGATTGCTGTGGAATTTGCTTGACTGAAA
CTGGACATGGAACCACAATTATCAGAGGTGTTATCGATTGTTGCAACCATTACTTCTGCT
TTGTATGTATCATAGAGTGGTCTAAAGTTGAGTCCAGATGCCCCATGTGTAAACGCCGGT
TCTCCATCATCCGCCGCCCTGCTAGACCTCCCATTTTCCCTTCCGAACGCGTTGTCAATG
TTCCTGTCCGCGATCAGGTTTATCATTGCCATGGAAATGCAACAACTGGACCACGGGATC
TGTATGCAGAAGTCCAATGTAACGTGTGCCATAGCACGGCTGATGACGTTCTCCTGCTGT
TGTGCGACCTTTGTGACACTGCTTATCATACTTATTGTGTTGGCCTTGGTGCTACTGTTC
CTGAGGGTGATTGGTTTTGTGCAGACTGCGCCCTTCTGAAGGCTGAACAGGCCCAGAGTG
ACATCAAAACTGATTGCTGTACCCAAACTAGTTTCGGTGAACCCCAATCAGCAGAATCAA
CAAGACAAGTATCTATATATGATATTGTACGAGAGTCTCGTGTTGATGGCGTCGAGAGCA
CTCCAACTGGTGCTTTGGATGCTTCCGACAGTTCATCTCGTATTGAATCTAGAAGGCAAA
GTACTTCTCGAAGCAGCTCAATTAGGTTAGGTTCTGTAGGAAATAATGGTGTTGCAGGAC
GCACCACTAAGTTCAATGCCAGAACCCTGGGGCATTGCCGCAATGTCCATGATAGGATAC
GCATATTGCGTGAACATTGGAATGGTTTTCGAAGTGGATCCTTGAGGTTTCCTTCTAGCA
AAGTGACTAATGCTAGTAGTGCTAAACTAAAACCAGTGCGTGGTAGCAATTCTGCTGAAC
GGCCTTTAGTATGTTGCTCGAGTCAACCAAGGACTTCTCAGCCTTCCAATCAAAATAGAC
CTGACAGTAAAGGGCCAACAGAGGTGAAGAAGGCGTGGAAAATGATGAATATGGCTAAGG
CAATAGAACAAAATAGTGTCGGGAACAAAAGTTCTGTTCAGGCCTCAAAACATTCAGTTC
AGAAGAATACTAGCTACAAAGAAGCAAGTGAATCGAGCTCAACGTCTATCAAAATGAAGA
TCGAACAGCATCGGCCTCCGTATATTCAAAATGTTGGTCCAGGTAGTCATTCCGAGAATG
ATGTTTGTAAGTTGGACATTGGATCAAAAGGTGCTTCAGGTGTATATAAAGGCTCTTCAA
TGTCATGCAGACCATTATATAGTGAACTTGTATCTTCGAGGGAGTCTCAGAATTCACTTC
AGCCATATGTTTGTGATGCGAACAATGGACTACCATGGAAGAATAAGTCGTGTGCTGGGG
CCACACATTTGAGTTCTTCTATCAGGTTGACATCAATTTCTACTACTGTAGGTCATGAGA
AAGAGATCAGTTCTTCCTCGAATAGCATTGTGAATCCTCAGGAGAAACTGAAGGTCGAAA
AGAGTGTAACTAAGAGAAGGGTTGAGGTGAAATCTGATGCTAAGACTGAGATCCAATCTC
TTGTGAAGCTCAACCTAAAAATCTTGTGCGGGGATAAAAAGCTCGAAGTTGACACATTTA
AGCAAGTTGCAAGAGTAGCTACTCATTCCATCTTAGCTGCTTGTGGTCTGGAGCACAAAA
CACATGGTATTTCTTCCCTTCCAGAATGTGTGTGTGTCCACAGCGAGGAAGATAAGGAAC
TCAGCAGATCTACTTTAATGCCTAAATCGTGCCGAGAATGTTTCTTCTTATTTGTGAAGA
ATGTGGTGAATACTGTACTGTTAGACAAGAGATGAGAGGATTGTTTGTTTGCAGCATCAT
TAGATATTTGCCTATACTTCTTTATAGGTCGGAATTATACCATAGATAAATTAGTTCAGC
TGTTCAGGGGATATTTAGCATTTTAGTGGGCTATTCTGTGTTCTGTAGACATGTTGTAAA
ACATAATACCTGTTATGTTTGGTAAATGACAAACTGTTATTTTGATAATTATGAATCTTA
TTTTGTATATATATTATATATGAAGTTCTCTCTTTTAA