Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g068840.3.1
CDS Infomation

Calcium-dependent phospholipid-binding Copine family protein (AHRD V3.3 *** AT5G61900.3)
Sequence

ATGGGAAATTGCTGCTCCGACGAGAACGGTGGACATTCGGGGGTCGGCGGTAACGGTGCT
TACGCGGCAAATCAAAACAACGGCCATAACGAAGCCTTCGATGCTCTACTCAAGTCTCGC
GGTTACCAAGGCCTCTACTCGCATGTCGAGTTGTCTCTATCTGCTACCGGTTTGCGTGAT
CGCGATGTGCTTTCCAAGAGTGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGT
TCATTGCAAGAGCTTAGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATT
ACAAAGTATACTATTGCCTATCATTTTGAGACAGTGCAGAATTTAGTGTTCCGTGTCTGT
GATGTTGACACCCAATTTCATAATCAAGATGTCAAGATGCTTAAACTGGAGGAGCAGGAC
TTTCTTGGCGAGGCTAGTTGCACATTATCTGAGATTGTCACAAAGTCAAACGGGTCCCTG
ACCTTAGACATTATACGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGT
AAGCTTACTATTTGTGCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTG
AGATGTTCAGAATTGGTGTCCAAGGATTTGTTCTCCAAAAGTGATCCCTTTTTGGTGATA
TCTAAATATACAGAGAGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGAT
GATCATAGTCCAAAGTGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAGGAC
AGTCCATTGACTATTGAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGGC
AAGATTCAGAAATCACTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAAT
CTTTTCACATCAGCTGCTGTAGGACAAAGTTCGCAAAACAAGGTCCTAAAGAGCCAGCTT
TTTGTGGATAGCTTTTTCGAGAAAACCCAGCATACATTCCTCGATTACTTGGCATGGGGC
TATGAACTTAACTTCATGGTGGCCATTGACTTTACTGCTTCTAATGGAAATCCACGCTTA
CACGATTCATTGCATTATATCGATCCTTCAGGACGGCCAAATGATTATCAGAGAGCCATC
TTGGATGCTGGAGAGGTATTGCAGTTCTATGATAGAGACCGACGTTATCCTGCTTGGGGT
TTTGGAGCGCGGCCAATCGATGGCCCTGTTTCTCATTGCTTCAATCTAAATGGCAGCAGT
GACTACTGTGAGGTGGAAGGAATCCAGGGTATCATGACGGCATACATGAGTGCCCTTTTT
AATGTTTCACTTGCAGGACCAACTATATTTGGACCAGTTGTTACGTCAGCTGCAGATATA
GCAAATCAGTCTTTGATGAAGCGCGAGCGGAAGTACTTCGTTTTGTTAATAATCACGGAC
GGAGTGATAACAGATCTCCAAGAAACAATGGATGCCCTTGTTCATGCTGCGGATTTGCCA
TTGTCAGTTCTTATTGTTGGGGTTGGAGGAGCTGATTTCAAGGAAATGGAGATTTTAGAT
GCTGACAAACAGAGACTTGAATCAACACATGGGCGTGTTGCAGTGCGTGACATAGTCCAA
TTTGTTCCCTTCCGGGATGTACAAAGTGGAGACTCGGTCCTTCAAGCACTTTTAGCAGAA
CTACCTTCCCAGTTTTTGGAATACATGCGGCTCAAAAGGATCCAGCCAACTTAA

Peptide Sequence

PEP ID

Solyc06g068840.3.1
PEP Infomation

Calcium-dependent phospholipid-binding Copine family protein (AHRD V3.3 *** AT5G61900.3)
Sequence

MGNCCSDENGGHSGVGGNGAYAANQNNGHNEAFDALLKSRGYQGLYSHVELSLSATGLRD
RDVLSKSDPMVVIYSKGRDGSLQELSRTEVVPNSLNPKWITKYTIAYHFETVQNLVFRVC
DVDTQFHNQDVKMLKLEEQDFLGEASCTLSEIVTKSNGSLTLDIIRGEQSSGPTHAQKSG
KLTICAEESVASKTTVELKLRCSELVSKDLFSKSDPFLVISKYTESGMMVPICKTEIIKD
DHSPKWKPIIVNIQQVGSKDSPLTIECYDFNSNGKHDLIGKIQKSLSDLEVLHSTGSSTN
LFTSAAVGQSSQNKVLKSQLFVDSFFEKTQHTFLDYLAWGYELNFMVAIDFTASNGNPRL
HDSLHYIDPSGRPNDYQRAILDAGEVLQFYDRDRRYPAWGFGARPIDGPVSHCFNLNGSS
DYCEVEGIQGIMTAYMSALFNVSLAGPTIFGPVVTSAADIANQSLMKRERKYFVLLIITD
GVITDLQETMDALVHAADLPLSVLIVGVGGADFKEMEILDADKQRLESTHGRVAVRDIVQ
FVPFRDVQSGDSVLQALLAELPSQFLEYMRLKRIQPT*

Transcript Sequence

Transcript ID

Solyc06g068840.3.1
Transcript Infomation

Calcium-dependent phospholipid-binding Copine family protein (AHRD V3.3 *** AT5G61900.3)
Sequence

GAACGACAGAATCATATTCTCTGATAATAGATTCGAACTCTTTTAACAATTAACATAGAG
ATAATTTCAATATATAAACGCGCTTTTATTTTATTACTACAACTTTTGGACTGACGCAGC
TAGTGTGGGTCCCTCTCCCTTCTTCCGTTTCTCTCTCTAACTCTCTGTTCAAAAGTTTCC
ATTACATACAGTAAAGTTCAATTTATTTACCAAAGTTTCTGCGCGCACACAGATATTTGG
ATTTGTTGCTTCCTGAAATTGTAGCAATCGGCGGCAGTAGCAGCCATGGGAAATTGCTGC
TCCGACGAGAACGGTGGACATTCGGGGGTCGGCGGTAACGGTGCTTACGCGGCAAATCAA
AACAACGGCCATAACGAAGCCTTCGATGCTCTACTCAAGTCTCGCGGTTACCAAGGCCTC
TACTCGCATGTCGAGTTGTCTCTATCTGCTACCGGTTTGCGTGATCGCGATGTGCTTTCC
AAGAGTGATCCTATGGTAGTCATTTATTCAAAAGGAAGAGATGGTTCATTGCAAGAGCTT
AGTCGTACTGAAGTAGTTCCAAACTCATTGAATCCCAAGTGGATTACAAAGTATACTATT
GCCTATCATTTTGAGACAGTGCAGAATTTAGTGTTCCGTGTCTGTGATGTTGACACCCAA
TTTCATAATCAAGATGTCAAGATGCTTAAACTGGAGGAGCAGGACTTTCTTGGCGAGGCT
AGTTGCACATTATCTGAGATTGTCACAAAGTCAAACGGGTCCCTGACCTTAGACATTATA
CGTGGAGAACAATCTTCTGGTCCAACGCATGCCCAAAAATCTGGTAAGCTTACTATTTGT
GCTGAAGAAAGTGTTGCCTCAAAGACTACTGTAGAGTTGAAATTGAGATGTTCAGAATTG
GTGTCCAAGGATTTGTTCTCCAAAAGTGATCCCTTTTTGGTGATATCTAAATATACAGAG
AGTGGAATGATGGTTCCAATTTGCAAAACAGAAATTATTAAAGATGATCATAGTCCAAAG
TGGAAACCAATTATCGTGAATATTCAACAAGTTGGAAGTAAGGACAGTCCATTGACTATT
GAGTGTTATGACTTCAATTCAAACGGAAAGCATGATTTAATTGGCAAGATTCAGAAATCA
CTATCAGATTTAGAAGTGTTGCACTCGACTGGTTCGAGTACTAATCTTTTCACATCAGCT
GCTGTAGGACAAAGTTCGCAAAACAAGGTCCTAAAGAGCCAGCTTTTTGTGGATAGCTTT
TTCGAGAAAACCCAGCATACATTCCTCGATTACTTGGCATGGGGCTATGAACTTAACTTC
ATGGTGGCCATTGACTTTACTGCTTCTAATGGAAATCCACGCTTACACGATTCATTGCAT
TATATCGATCCTTCAGGACGGCCAAATGATTATCAGAGAGCCATCTTGGATGCTGGAGAG
GTATTGCAGTTCTATGATAGAGACCGACGTTATCCTGCTTGGGGTTTTGGAGCGCGGCCA
ATCGATGGCCCTGTTTCTCATTGCTTCAATCTAAATGGCAGCAGTGACTACTGTGAGGTG
GAAGGAATCCAGGGTATCATGACGGCATACATGAGTGCCCTTTTTAATGTTTCACTTGCA
GGACCAACTATATTTGGACCAGTTGTTACGTCAGCTGCAGATATAGCAAATCAGTCTTTG
ATGAAGCGCGAGCGGAAGTACTTCGTTTTGTTAATAATCACGGACGGAGTGATAACAGAT
CTCCAAGAAACAATGGATGCCCTTGTTCATGCTGCGGATTTGCCATTGTCAGTTCTTATT
GTTGGGGTTGGAGGAGCTGATTTCAAGGAAATGGAGATTTTAGATGCTGACAAACAGAGA
CTTGAATCAACACATGGGCGTGTTGCAGTGCGTGACATAGTCCAATTTGTTCCCTTCCGG
GATGTACAAAGTGGAGACTCGGTCCTTCAAGCACTTTTAGCAGAACTACCTTCCCAGTTT
TTGGAATACATGCGGCTCAAAAGGATCCAGCCAACTTAACGATCATACAAGAATTGTACA
TACAAATGTTGATTCATGTATTGTGTCCTGTTAAATTCGCCATTTTCTAGCTTGTTCCCC
AATGGTGTCAGAAGTTTTGTTTTTGGATGTCTCAATTCGCCTTCTCTTTCCTATTTCCCA
GAAGCTTGTACTTTTTAAATTATATTTCTTCATTATCATCTTCTTATTTATTTTGTTGAT
TCAATTTCAAATGAAGCTCTTTTACCTTTGTGTACTGATTGTGTAAATGTAATCTCGTCA
GGATGAAAGGATGCTGCAAATACCTTCCTTTTGTGAGTGTCTACAGATTACATTGCTATT
TAATTCCAGATAGTTTATGAAGTTTCACACGCGATTTGTATGACACAATATGAAATTGCA
AGAGAAGCCAGCTTTTAGTCTGGTTTCTTCTAGTAACACTTGGCCAGTCTACTTTTTTTT
TC