Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g062860.3.1
CDS Infomation

Ataxin-2 related protein (AHRD V3.3 *** A2PZE4_IPONI)
Sequence

ATGCAGCAACCCGTGCAGCCAAGGTCTTCTGCCAATGGATATGGCCGTCGTAAAGTTGAT
AGAGAAATGGGTACTAAGTTGGAGAATAAAGCGCAATCTGGAAAAACTACTTCTCGTCAA
TTTACAGGTAAAGGGGGAGCATATCAAAGCCTGTCACATGATCGACTAGTTTATTTCACT
ACCTGTCTTGTTGGACATCAAGTGGAAGTACAAGTGATGGACGGATCAGTGTTTTCAGGG
ATACTTCATGCGACAAACGCTGAAAAAGATTTTGGTATCATTCTGAAAATGGCGCAGTTG
ATAAAAGATAGCTCTGAGGGGATGAAGAGTAGTTCTGAAACTTTTAGCAAGCCTCCATTA
AAGACTTTGATAATACCGGGTAAAGAGTTTGCTCAAGTTACAGCAAAGGGTGTGCCTACA
ACTCTAGACGGTTTCAGAACAGAATTCATGCTGGAACAGCAGCAGGAACTTTTGACTGAT
TCATGCATTTCACAATCTCGGCATATTGAGGTAGAGCGGCAATTGGAACGCTGGGTACCT
GATGATGATGCTCCTGAATGTCCTGATCTGGACAATATATTTGATGACCATTGGAATAGG
GGCTGGGATCAGTTTCAAGCCAATGAAACACTGTTTGGAGTAAAAAGCACATTTGATGAG
GACCTTTATACGACAAAGCTTGAGAGAGGTCCTCAGATGAGTGAGTTGGAAAAAGAAGCT
CTAAGAATAGCTAGAGAAATTGAAGGTGAGGATACACGTGATCTTCATCTAGCAGAGGAG
AGAGGGATCCAACTTCATGAGAACCTAGAAGTGGACGAGGAAACCAGATTTTCCGCAGTT
GTTAGAGAGATTGATGATAGCGGCTATGACAACTGTGAGGACATCCTGTTGGATTCACGT
AATGATGAGACATTTCAAGGTATATCTAGTGCTATGGGGAAGTCATTTACTGACATGGGC
AGAAGGAAAATGAATGATGGTGCACAAGTTTCATTAAGATCTTCCTTCATGGATGAAGTG
CAATCTTCCAAGCTAAGTACCAGTAGGGATGTCTACCAGACTTGTTACGATGATCATGCG
AAACAGTCATCAGCTGAAGTTGTCCTTAAAGGTGGCTCTATCTTAAACAGGGGTCGCAAA
ACTCTGTTTAGTGAGCATGCTGGAGCAAGTTGGAATAAGGAGGATACAAGAAATCAAATG
ACGGATGAAGTTGCTCAAACGTCAGTATTGGAAGATTCAATGTCTTCTTCAAGAATGAAA
ATGGAGACCTCTGATGGGGGTAGATTGTCTCCAGACATCTCTGCATTGCATGTTCATCCA
GCGGACCAGGATATGATCACAAGTTCTTCTAGAGAGAAGTTTGAGGGTGCGGTGTCTTCC
AAGATTCAAGGGGCTCCACAATCTGCTAATTCTCGTGTACGACCTAGTAGTTCTGTTCTT
TCCGGTTCTGATGGAACAGGTGCTGCCTCAACGTCAGCTGACAATGGATTATCACGAACC
TCTTCTGTAAATTCATTTTCGTCAGAAAAATCCACATTGAATCCACATGCTAAGGCAAGA
ACTATTTCTGAATCTTCCGAATTTAAATTAAATCCTAATGCAAAGAGTTTCATGCCATTT
CAATCACCTTTGAGACCTGCTTCTCCGGTGTCTGATAGTTCCTTCTATTATCCAGCTGGT
GTGGCTACTGTTCCCAATGTGCATGGCATGCCTGTTGGGGTAGGTCCTTCATTTTCTCCA
CATCAGCCTGTTATGTTTAATCCACAAGCTACACCTGTACCACAACAATTTTTTCATCCA
AATGGACCACAGTATGGGCAGCAGATGATGATTGGTCCCCCTCGGCAAGTAGTCTATATG
CCGAATTACCCCGCTGAAATGCGACGAGACTACTAA

Peptide Sequence

PEP ID

Solyc06g062860.3.1
PEP Infomation

Ataxin-2 related protein (AHRD V3.3 *** A2PZE4_IPONI)
Sequence

MQQPVQPRSSANGYGRRKVDREMGTKLENKAQSGKTTSRQFTGKGGAYQSLSHDRLVYFT
TCLVGHQVEVQVMDGSVFSGILHATNAEKDFGIILKMAQLIKDSSEGMKSSSETFSKPPL
KTLIIPGKEFAQVTAKGVPTTLDGFRTEFMLEQQQELLTDSCISQSRHIEVERQLERWVP
DDDAPECPDLDNIFDDHWNRGWDQFQANETLFGVKSTFDEDLYTTKLERGPQMSELEKEA
LRIAREIEGEDTRDLHLAEERGIQLHENLEVDEETRFSAVVREIDDSGYDNCEDILLDSR
NDETFQGISSAMGKSFTDMGRRKMNDGAQVSLRSSFMDEVQSSKLSTSRDVYQTCYDDHA
KQSSAEVVLKGGSILNRGRKTLFSEHAGASWNKEDTRNQMTDEVAQTSVLEDSMSSSRMK
METSDGGRLSPDISALHVHPADQDMITSSSREKFEGAVSSKIQGAPQSANSRVRPSSSVL
SGSDGTGAASTSADNGLSRTSSVNSFSSEKSTLNPHAKARTISESSEFKLNPNAKSFMPF
QSPLRPASPVSDSSFYYPAGVATVPNVHGMPVGVGPSFSPHQPVMFNPQATPVPQQFFHP
NGPQYGQQMMIGPPRQVVYMPNYPAEMRRDY*

Transcript Sequence

Transcript ID

Solyc06g062860.3.1
Transcript Infomation

Ataxin-2 related protein (AHRD V3.3 *** A2PZE4_IPONI)
Sequence

CTGATTACTATATAATTGCTAAATTTAATAACTTGAAAAATAAAGCAAACAACCTTTTAT
AACGAGTCAAATTTTATTTATATTATAAAAACTCATTCATTATAGTGTATATGTCTAATA
CACGCAAGCTACAGTTTATATTATAAATAATATAGAAATAATCAATTTAGTTATGCGCTT
AGAAATGATCAAAATACGTTTTGAATATAAAAAGAAGAAATTGAGGAACATGTCAATTTT
TATGTTTGATTTATTTAATGAAAGATTATAAAAGGAATATTGTTTTATTTAAAATACGAA
CTTTAAAATGTCAATTTATATGTTCCATGTAAGCAAATTTTTGTCATTTTTAATTGGATC
ATATAAATCGTTGTTTAAGAATAGTTATATTATTAATCCTAATAATGCATTTTTACTTTA
TTTAAAATGACATATAAATTTCTGCATATGTCTATCATGCAACAAGAAAAATAAAACCCA
AACAAATAACGTAACCAAAGAAAAAAGATTTCTCATTTAGGATTAAGAAAATTTATGTAC
GCTGATAAAATTAAAAATGAAGAAAACTTTCTAATTCGTTAAGTAATATTTTTTAACTCT
AATTAGCTACTAAATAATATCCAATTCTATAGATGTAAATATCCTTGCATATATGCTCTG
ATCATTTTTGCTATTCGCTATCTTATTATTATTATTTTGGTTTGTTTTTTGAAAATGAAC
TTTAATTTAGAAGAGATAGTTATATATATTCTTCGTAATTTCACTGAATTTATTATTTTC
GTAATTATTGATACAGACAAAGGTGTTTAAACGGACATCGTAATGGAGTGTGTGTGAGAG
AGAACCCATTTTGAGGAATTCGGGGGCAATTTCAGTTTCTCGGTGGCGGAAGACGCGCAG
AGACTTCACCCTTTCAATTCCGTTGACACATATACAGAGGTGTCGTTTCTGATAATCAAT
TTCACTTTCTCTTTGCTACGATCGCTACATTCTCTCTCTCTCTTTTGTGTAGACTGAACC
CGCGCTGAACTGCATTTCGCCTATAAATTAATATATTTCTTAGGAAGATGCAGCAACCCG
TGCAGCCAAGGTCTTCTGCCAATGGATATGGCCGTCGTAAAGTTGATAGAGAAATGGGTA
CTAAGTTGGAGAATAAAGCGCAATCTGGAAAAACTACTTCTCGTCAATTTACAGGTAAAG
GGGGAGCATATCAAAGCCTGTCACATGATCGACTAGTTTATTTCACTACCTGTCTTGTTG
GACATCAAGTGGAAGTACAAGTGATGGACGGATCAGTGTTTTCAGGGATACTTCATGCGA
CAAACGCTGAAAAAGATTTTGGTATCATTCTGAAAATGGCGCAGTTGATAAAAGATAGCT
CTGAGGGGATGAAGAGTAGTTCTGAAACTTTTAGCAAGCCTCCATTAAAGACTTTGATAA
TACCGGGTAAAGAGTTTGCTCAAGTTACAGCAAAGGGTGTGCCTACAACTCTAGACGGTT
TCAGAACAGAATTCATGCTGGAACAGCAGCAGGAACTTTTGACTGATTCATGCATTTCAC
AATCTCGGCATATTGAGGTAGAGCGGCAATTGGAACGCTGGGTACCTGATGATGATGCTC
CTGAATGTCCTGATCTGGACAATATATTTGATGACCATTGGAATAGGGGCTGGGATCAGT
TTCAAGCCAATGAAACACTGTTTGGAGTAAAAAGCACATTTGATGAGGACCTTTATACGA
CAAAGCTTGAGAGAGGTCCTCAGATGAGTGAGTTGGAAAAAGAAGCTCTAAGAATAGCTA
GAGAAATTGAAGGTGAGGATACACGTGATCTTCATCTAGCAGAGGAGAGAGGGATCCAAC
TTCATGAGAACCTAGAAGTGGACGAGGAAACCAGATTTTCCGCAGTTGTTAGAGAGATTG
ATGATAGCGGCTATGACAACTGTGAGGACATCCTGTTGGATTCACGTAATGATGAGACAT
TTCAAGGTATATCTAGTGCTATGGGGAAGTCATTTACTGACATGGGCAGAAGGAAAATGA
ATGATGGTGCACAAGTTTCATTAAGATCTTCCTTCATGGATGAAGTGCAATCTTCCAAGC
TAAGTACCAGTAGGGATGTCTACCAGACTTGTTACGATGATCATGCGAAACAGTCATCAG
CTGAAGTTGTCCTTAAAGGTGGCTCTATCTTAAACAGGGGTCGCAAAACTCTGTTTAGTG
AGCATGCTGGAGCAAGTTGGAATAAGGAGGATACAAGAAATCAAATGACGGATGAAGTTG
CTCAAACGTCAGTATTGGAAGATTCAATGTCTTCTTCAAGAATGAAAATGGAGACCTCTG
ATGGGGGTAGATTGTCTCCAGACATCTCTGCATTGCATGTTCATCCAGCGGACCAGGATA
TGATCACAAGTTCTTCTAGAGAGAAGTTTGAGGGTGCGGTGTCTTCCAAGATTCAAGGGG
CTCCACAATCTGCTAATTCTCGTGTACGACCTAGTAGTTCTGTTCTTTCCGGTTCTGATG
GAACAGGTGCTGCCTCAACGTCAGCTGACAATGGATTATCACGAACCTCTTCTGTAAATT
CATTTTCGTCAGAAAAATCCACATTGAATCCACATGCTAAGGCAAGAACTATTTCTGAAT
CTTCCGAATTTAAATTAAATCCTAATGCAAAGAGTTTCATGCCATTTCAATCACCTTTGA
GACCTGCTTCTCCGGTGTCTGATAGTTCCTTCTATTATCCAGCTGGTGTGGCTACTGTTC
CCAATGTGCATGGCATGCCTGTTGGGGTAGGTCCTTCATTTTCTCCACATCAGCCTGTTA
TGTTTAATCCACAAGCTACACCTGTACCACAACAATTTTTTCATCCAAATGGACCACAGT
ATGGGCAGCAGATGATGATTGGTCCCCCTCGGCAAGTAGTCTATATGCCGAATTACCCCG
CTGAAATGCGACGAGACTACTAATCAGTTGGCAAACCATATTGCGTGGTGGGTTGAACCG
ATGGATGCTGACATGAGATTTCATGGATTGGTGGAGGAGGTTTAGCTGGTTGATGAAGGG
GGATTCCAATGATTTGATTAGAGCTTTTCCTTATACTGGGGTATCAGTAATTGTTACTTT
GTCATAATCATTAGATTTGTTAACTTTCAGATTTACAGTCTTTCTTGAAGTTAACTGTGG
TGTTTCCTTGGTATGCTGCTGTTGATATTTCTTCTCTTTGATCTGTATTCCTAATATTGT
ATGTTTCTCGTCCCTTTTCAATACTATTTAGTAGACTTTTAGCTGCTTATTGGTGCAAAT
TAAAACTACAAAAAAGTGAGGAGGCAATTTACACTCTTTTTTTTCAAAGTTTATTTTCGT
TGGCGTGGAAATTATTCACAAAGACTTCTTATAC