Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g062530.3.1
CDS Infomation

Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B (AHRD V3.3 *** K4C6Y4_SOLLC)
Sequence

ATGAACGCTGGTGATGGCGGAGCTTCGGCGGGAACACCAGCTCCATTGGAGTGGAAATTC
TCTCAGGTATTTGGTGAACGTACGGCCGGCGAAGAAGTTCAGGAAGTTGATGTCATTTCA
GCTATTGAGTTTGATAGAACTGGCGACCATCTTGCCACCGGGGATCGAGGGGGTAGGGTG
GTGTTATTTGAAAGGACCGATGCGAAGGAGCATGCTGGAAGCCAAAGAGAATTAGAGAGA
ATGGATTATCCAGTCGCTCGGCATCCCGAATTCCGTTACAAAACAGAGTTTCAAAGCCAT
GAGCCTGAGTTTGATTATTTGAAGAGTTTGGAGATTGAGGAGAAGATCAATAAGATCCGG
TGGTGCCAAATGGCTAATGGTGCCCTCTTCCTTTTGTCTACTAATGACAAAACTATTAAG
TTCTGGAAGGTCCAAGAGAAGAAAGTTAAGAAGATATCTGATCTGAATATCGACCCTTCC
AGAGGTGTTGCAAAAGGTAGCATGCCCAGTTCAAGCGTTTCTTCCAGTCAAAAACAGTAT
CTTGCAAATGGGTGCTACACAGATGGATCTTCTGAATGTTTAAGCAATGATTTGTCGTTT
CCACCTGGTGGTCTTCCTGGATTACGCTTACCTGTGGTTACTAGCGGTGAGACCAGCCTT
GCTGCTAGATGTAGAAGAGTGTATGCCCATGCACATGACTATCATATCAATTCTATTTCA
ACTAACTGTAATGTTCATTTCTTTCTTCCACCTAGTGATGGGGAAACATTTATATCAGCT
GATGATCTCCGTATAAACCTTTGGAACTTGCAAATAAGCAATCAAAGTTTCAATATTATT
GATGTCAAGCCAACAAATATGGAAGATCTAACTGAGGTGATAACTTCAGCTGAATTTCAC
CCTACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGAT
ATGCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTTTGAGGAGCAGGAAACTCCT
GGCTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAG
GCTGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGCTATGGGATATAAACATG
GATTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGCTGTGTGAT
TTATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCT
CGAGTAGCAACTGGATCTTATAGCAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGC
GCAGAAGCGACTACATTAGAAGCGAGCAAAAACCCCAGGAGACAAGTCCAGACCCCTTCG
AGGCCTTCCAGGTCCTTGAGCAGCAGTATAACCCGTGTTGTCAGGAGAGGATCAGAAAGT
CCTGGGGCTGATGCCAATGGAAACTCATTTGATTTCACAACCAAACTGCTCCACCTTACA
TGGCATCCAACTGAAAATTCAATTGCATGTGCTGCTGCAAACAGCTTGTACATGTATTAT
GCATAA

Peptide Sequence

PEP ID

Solyc06g062530.3.1
PEP Infomation

Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B (AHRD V3.3 *** K4C6Y4_SOLLC)
Sequence

MNAGDGGASAGTPAPLEWKFSQVFGERTAGEEVQEVDVISAIEFDRTGDHLATGDRGGRV
VLFERTDAKEHAGSQRELERMDYPVARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR
WCQMANGALFLLSTNDKTIKFWKVQEKKVKKISDLNIDPSRGVAKGSMPSSSVSSSQKQY
LANGCYTDGSSECLSNDLSFPPGGLPGLRLPVVTSGETSLAARCRRVYAHAHDYHINSIS
TNCNVHFFLPPSDGETFISADDLRINLWNLQISNQSFNIIDVKPTNMEDLTEVITSAEFH
PTHCNILAYSSSRGSIRLVDMRQSALCDSHSKLFEEQETPGSRSFFTEIIASISDIKFAK
AGRYILSRDYMTLKLWDINMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGS
RVATGSYSNLFRVFGCAPGSAEATTLEASKNPRRQVQTPSRPSRSLSSSITRVVRRGSES
PGADANGNSFDFTTKLLHLTWHPTENSIACAAANSLYMYYA*

Transcript Sequence

Transcript ID

Solyc06g062530.3.1
Transcript Infomation

Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B (AHRD V3.3 *** K4C6Y4_SOLLC)
Sequence

GAATTGATTCTCCACTGATGTTTTTTTTTTCTCTTTTGACTCGACGATGTAAGGTTAAAG
CAGGGCTTATGCAAAAAATAGGAAGTAGAGAGAGAAAGCTTTGTGTGTAGAGAGAGAGAA
AAGAGTGTTCACCCAAGGCCGAAAACGGTTTTGCTACCTCCAAATTTCCCTTTGTTCTCT
TTCTCGAATCCTCATCATCACCATTAGAGAGAAACAAGGGATACCGCTGTGAGAATCTCG
TGTTCCAAGCAATATGTCGTTATTCATACTTGTAATTTAGTTGATTTTTGAATCCAGCAT
TTTCTATGAAGTTAAAGCGATCTCAACGGATGACGGAGTAGTCGATGAAGTGATTCATAT
CTTATTTATCATTGTTGTGCCTCACTTGATTCTAGATTTACCAATTTTTGGATCCTCGCT
TTTTCTGCTTCTTCGCTCTCTGAGGGCTATTGATTTTTTTTTAATCGGTTGAGGAAAGAT
GAACGCTGGTGATGGCGGAGCTTCGGCGGGAACACCAGCTCCATTGGAGTGGAAATTCTC
TCAGGTATTTGGTGAACGTACGGCCGGCGAAGAAGTTCAGGAAGTTGATGTCATTTCAGC
TATTGAGTTTGATAGAACTGGCGACCATCTTGCCACCGGGGATCGAGGGGGTAGGGTGGT
GTTATTTGAAAGGACCGATGCGAAGGAGCATGCTGGAAGCCAAAGAGAATTAGAGAGAAT
GGATTATCCAGTCGCTCGGCATCCCGAATTCCGTTACAAAACAGAGTTTCAAAGCCATGA
GCCTGAGTTTGATTATTTGAAGAGTTTGGAGATTGAGGAGAAGATCAATAAGATCCGGTG
GTGCCAAATGGCTAATGGTGCCCTCTTCCTTTTGTCTACTAATGACAAAACTATTAAGTT
CTGGAAGGTCCAAGAGAAGAAAGTTAAGAAGATATCTGATCTGAATATCGACCCTTCCAG
AGGTGTTGCAAAAGGTAGCATGCCCAGTTCAAGCGTTTCTTCCAGTCAAAAACAGTATCT
TGCAAATGGGTGCTACACAGATGGATCTTCTGAATGTTTAAGCAATGATTTGTCGTTTCC
ACCTGGTGGTCTTCCTGGATTACGCTTACCTGTGGTTACTAGCGGTGAGACCAGCCTTGC
TGCTAGATGTAGAAGAGTGTATGCCCATGCACATGACTATCATATCAATTCTATTTCAAC
TAACTGTAATGTTCATTTCTTTCTTCCACCTAGTGATGGGGAAACATTTATATCAGCTGA
TGATCTCCGTATAAACCTTTGGAACTTGCAAATAAGCAATCAAAGTTTCAATATTATTGA
TGTCAAGCCAACAAATATGGAAGATCTAACTGAGGTGATAACTTCAGCTGAATTTCACCC
TACTCACTGTAACATATTGGCTTATAGTAGTTCAAGAGGATCAATACGTTTGGTAGATAT
GCGGCAGTCAGCATTGTGCGACTCGCACTCTAAGTTGTTTGAGGAGCAGGAAACTCCTGG
CTCAAGGTCCTTTTTTACCGAGATAATTGCTTCAATTTCAGATATAAAATTTGCAAAGGC
TGGAAGATACATACTCAGTCGTGACTACATGACCCTGAAGCTATGGGATATAAACATGGA
TTCTGGTCCAGTTTCAACTTTTCAGGTTCATGAACATTTGAGACCAAAGCTGTGTGATTT
ATATGAGAATGATTCCATCTTTGATAAATTCGAGTGTTGCCTTAGTGGTGATGGTTCTCG
AGTAGCAACTGGATCTTATAGCAATCTTTTTCGTGTGTTCGGTTGTGCTCCGGGAAGCGC
AGAAGCGACTACATTAGAAGCGAGCAAAAACCCCAGGAGACAAGTCCAGACCCCTTCGAG
GCCTTCCAGGTCCTTGAGCAGCAGTATAACCCGTGTTGTCAGGAGAGGATCAGAAAGTCC
TGGGGCTGATGCCAATGGAAACTCATTTGATTTCACAACCAAACTGCTCCACCTTACATG
GCATCCAACTGAAAATTCAATTGCATGTGCTGCTGCAAACAGCTTGTACATGTATTATGC
ATAAGTCATGACAGGAGGAATCGGGTTCTCTTGGGTTGCGTTTCTTGGAGTGCTTTTTCA
GAAGGCTTCTTTTCAAACCAACTCGAGGTTCTACCATTTCTCACGTGCAGAATCCATGCC
GGCATATATTACAAGTTCTTAATGTCATAGCTCAAAGAATGGTCAATTTAGTAACTCACT
TGTCAACAACCCAACGTTCTTGTTCTCTTCCTACCTTCACCCTTCTCAAGATCTCCAATG
TCTTTATAGTTCTCCCCTCAAGCAAAACTGTTAGATATGCAGAAATTATCACTAGATGTA
AGGTAAATGCTGTTTTACTTCAATCCTGCTGGAAAAGACCTGCTGGCTTTACTTTATTGG
GTAGAAGTATTTTTTGTAGGATAATTTGATGTTTTTTTTTCTTTGCTATAGATTATCGAA
CTAAAGTAGCTTTGTTTTCTTGTCCTGTAAAAGTTCAAGGGAGCTGGTATTTATTTATCT
GCTTTCGTAAAGTGAAAGTTGCACACCTTTGTATCACTTGGGGTTCCTAAGTGCTTTACA
ACCTAAATTTTTTCAACAGACATGACTTAAATTAG