Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc06g062400.2.1
CDS Infomation	Protein CHUP1, chloroplastic (AHRD V3.3 *** A0A0B2RCB9_GLYSO)
Sequence	ATGGTGAGAGAAAAGAGGGATATAAGACCTGTAATCTTGAAATTTGGTGTTGCTTTAGCT ATATCACTTGGTGGAATTCTCTTTACTTTTTTCAGAACTAAAAGAATCAAACACTCTAAT TCCTCTTCTTCACCTAATTCAGGTGAGCTGCAAAATGATGATCAAACAAACCCTGCCTTG GGGAATTCAGTTTCCGAGTTTCCATGGAAATTTGAGGATGTCCCCATACGTAAAATCATT ATTGGGAGTTCTGTAAGTAGTCCTTCTACAAATTGTAGGTCTGGTGGAGACAAAGATGGG CTTTTTCTGCCGGAGATCAATGAACTTGAAAAGGAATTTGGTTCGCCTCCAAAGGATAGT TTTTCACCGCTGCAGGGTGCAGATTCACCCAAGGAATACAAAATTGTCGGAAGGGATGTC CATGAACAAGAGATTAAGAACCTGAAGAATATTGTTAAAACTCTTACGGAAAGGGATAGG AATCGTCAGATCCAACTGCTCGAGTATTATGGCTGCAAGGAGCAAGAAAAGGCCATGATG GAGCTTCAAAATCGAATGAAGATACACATTCTGGAGTCCAAGCATTTGGGTCTAAAGATC GAGACTTTGAAAGCAGAGAAGATGAAATTAGAGGCTCAAGTGGCTGAATATGCGAAGGTA GCCTCGGACCTTGAAGCTGCGAAATTGAAAATAAAGCAGCTGGAAAAGAAGCTCAGGTTG GGAGCTGGTCATAATAAGGACCAGATTTTATCCTTTAAAGAAAGAGTTTTGAAGCTGGGG AACAAGGAGAAGAATCCCGTTCAAGCTGAATCAAATGTTCAGTTGGAGCTCCAAAAGCTG AAGGACTTGGAAATCGAGGCTGATGAGTTGAGGAAATCTAACCAAAGGTTAAGAGCAGAA AACTCGACAGTTGGTGATAAACTGGAATATGTTCAGCTGATTGCCATTTCTGCTATGGAA AATAATGCAGCAGAAGCACTGAAAGAAGAAAGTCTACAGCTGAGAAAGCAAAATGAAGAT TTAGTAAAGAAAATTGATCAAATTCAAGAAGGTCACTACAGCTATGTTGAACAAGTAGCC TATCTTAGATGGATAAATGCTTGCTTGCGGTATGAGCTGAGGAACTTTAAGCCTGCTCCA GGAGAAACAACTGCAAGGGATCTCAGTAAAACGTTAAGCCCTGAATCTAGGAAGAAAGCC AAGCAACTAATTGTTGAATATGCAGCTAAAGAAGACCAAGGGGACAGGGGAATCCATGTT TTGGATCTTGATTCTGGCCAGTTATCCTCCCAAGAACCCTATCTTATGAATTCGGGTGAG TTTGATGGTACTTCTATTGCTAATTCTTCAACCCATAAGACTGACACTTCAAACAAAAGC ACAATCTTTCGTAAGGTTATGAGAATAATACGGGCAAAGGACCATCATCATAATCATTCA GAAATGGTTCACAAGACTGAAGAGAATGCAGCAAGATGCTCTTATTATTCTTCTGGGTAC TGTTCAGATATGTCTGTCGTAGATACCGGAGCTATTAGGCCCCAGAGCAGATCAAGAACA CCATCTCCAGGTCCGTCCAAACAACTTGTAGCTTTCCATTCATTTGATCAAGGCTCTACA AGCAGTAAAGGAGAAAGCAGAAACTATCCGACACGTAGAAGGAGATATAGTGATGTGGGC TCACTGGACTATATATCAAAGCGTCTTGCTGAATCACCTCAAGAAAAAGGAAATAACCAT GACCAAGAAAATGTTCATAAATCTGAGTTGGCGAAATATGCAGAAGCTTTGAAAGGATCT CGCTCTAAAGAAGCAGTTCGCAAGAGATCAGCATCAGTTAGTTTCTTCTAA

Peptide Sequence

PEP ID	Solyc06g062400.2.1
PEP Infomation	Protein CHUP1, chloroplastic (AHRD V3.3 *** A0A0B2RCB9_GLYSO)
Sequence	MVREKRDIRPVILKFGVALAISLGGILFTFFRTKRIKHSNSSSSPNSGELQNDDQTNPAL GNSVSEFPWKFEDVPIRKIIIGSSVSSPSTNCRSGGDKDGLFLPEINELEKEFGSPPKDS FSPLQGADSPKEYKIVGRDVHEQEIKNLKNIVKTLTERDRNRQIQLLEYYGCKEQEKAMM ELQNRMKIHILESKHLGLKIETLKAEKMKLEAQVAEYAKVASDLEAAKLKIKQLEKKLRL GAGHNKDQILSFKERVLKLGNKEKNPVQAESNVQLELQKLKDLEIEADELRKSNQRLRAE NSTVGDKLEYVQLIAISAMENNAAEALKEESLQLRKQNEDLVKKIDQIQEGHYSYVEQVA YLRWINACLRYELRNFKPAPGETTARDLSKTLSPESRKKAKQLIVEYAAKEDQGDRGIHV LDLDSGQLSSQEPYLMNSGEFDGTSIANSSTHKTDTSNKSTIFRKVMRIIRAKDHHHNHS EMVHKTEENAARCSYYSSGYCSDMSVVDTGAIRPQSRSRTPSPGPSKQLVAFHSFDQGST SSKGESRNYPTRRRRYSDVGSLDYISKRLAESPQEKGNNHDQENVHKSELAKYAEALKGS RSKEAVRKRSASVSFF*

Transcript Sequence

Transcript ID	Solyc06g062400.2.1
Transcript Infomation	Protein CHUP1, chloroplastic (AHRD V3.3 *** A0A0B2RCB9_GLYSO)
Sequence	AAATAATTTCTTAATTTGGAAAAATTTATGAACAATTAAATAAAATAGATCAAATGAAGA TAGTATCAACAAGTTGTAACTGATTGAGAAATTCATGAATAATCGAATAATCAAAACAAG TTTTGTTAGTTTAACCAGTATACTAAATAATTTAACAACATAGATACAATGAAAATGATT CTAAATTAGAATTGTTGACGGTATATGTGAACAAATTAAATAAAAAAACCCATAAATTTA TCTTTTGGATATAGAGTCAAAGCTATATTTGTAAAACTTTCTTGAATCAAAATAATACAC TCTTGCTTCTATATATGCCATCATTTGATCAATTACAAAATTTAAGAAATGATAATACAC TCTTGGTTCTAATGTATATGATATCATTTGATTAGTTAGAAAATTTAAGAAATAAGAAAA ACTAAGGTTTTCCAAATTGCTTTTATTAAAATAACATTAGCACTTACATTTTGTTGATAT TTCTTCCCATTAATAAATATAAAATAAGAAAAATAAGGCATTTTCTTTTGAATGAACTAA AAATACGTTATATAAATTAAAACAAACGAGTATATAAACAAGAGGAATTGACATATATAT ACAATTGCTACATATAATAATGAACAATTCCACCAAATGACCTTCCCTTGTTTCACCTTT TCCTCCTTAATATTCACAAATTATATTTCAATTTATTTGTCAAATTTTGATTTAGTAAGT AATTTTAAAAATTATTATTATTTTTTGCATTTTGTAGTTTTATGTGATAAATGTGTAGAA TATAGTAAATTATATTTAAGTAATGTGTTTTATCATGTCATATGAAAAAATAAATTTAAA GAGTTGTTGGGGAAAAATATATATATAATTATTACTTTCAAAGAAAAATATCCATTTTGT AGAATTAAATTAAAACATGTAAGCTCCTTCCCTATTCATGAACTCCAATTATGTAGATTA GAGCCAAATTGTGATGAATTTATAAGGCACGTAGTAACAATATACTCTGGAGTCTATATG AATGTCAATAAAATGCTTAAAGGTCAAGAAGTCGATGTCATAATGCAACTTGCATTTCAC CTGACATAAGACAATTTATTTGTTTGTATATTAAGACAACTATTGACGAACCGGGACCAG GTTGGTTCTACTTCAGAGCCTACACATGTCCATTTTTATTTATTTAGGTTTCCATCAATG TATCTTTAGAGTATATAACTAGTAAGAGTTTTGGAAATTCATTTGAGCCCCTTCAATTTT AAGTTTGTTTTATTTTTTCGTAATATGATTTTATTACTATATCTTTCAACTTAAGATGTA CTAATATAAATAAAGAAATATTTAGCACTTCATCGAATTTTTTAGGTGTTATGGTAGGCT ACACATGTTTCTTCTATTAATATTAAAACAGCAAAACAGATAATAGAATAATATAATTGA AAGTTGTCCATTTGCAGTTGCGTGTGTTGAGTCAGACAAACACAAACTGGACTGTAAACC AAACAAATCCACATCAAAATTACGTTTTCTGGGTTGATTCTTTGTCAATTCAAGTTTGAT TCTCCAAACTTAGATGCCCCAAAAAAACTTGTACAGTACGAATTTGAAAATTCCCTCTCC TTTTAGAAAGATTCAAAATTCAATTCTTTAACAAAGGGATCTTGCTTACTCCGTCCGCAA TGGCTGATGAGGAAAAGGGAAACCTGTGAAATTTATAAGATGATTGAATTTTGCATTTTT TGTTAGCAGAGGAATGGTGAGAGAAAAGAGGGATATAAGACCTGTAATCTTGAAATTTGG TGTTGCTTTAGCTATATCACTTGGTGGAATTCTCTTTACTTTTTTCAGAACTAAAAGAAT CAAACACTCTAATTCCTCTTCTTCACCTAATTCAGGTGAGCTGCAAAATGATGATCAAAC AAACCCTGCCTTGGGGAATTCAGTTTCCGAGTTTCCATGGAAATTTGAGGATGTCCCCAT ACGTAAAATCATTATTGGGAGTTCTGTAAGTAGTCCTTCTACAAATTGTAGGTCTGGTGG AGACAAAGATGGGCTTTTTCTGCCGGAGATCAATGAACTTGAAAAGGAATTTGGTTCGCC TCCAAAGGATAGTTTTTCACCGCTGCAGGGTGCAGATTCACCCAAGGAATACAAAATTGT CGGAAGGGATGTCCATGAACAAGAGATTAAGAACCTGAAGAATATTGTTAAAACTCTTAC GGAAAGGGATAGGAATCGTCAGATCCAACTGCTCGAGTATTATGGCTGCAAGGAGCAAGA AAAGGCCATGATGGAGCTTCAAAATCGAATGAAGATACACATTCTGGAGTCCAAGCATTT GGGTCTAAAGATCGAGACTTTGAAAGCAGAGAAGATGAAATTAGAGGCTCAAGTGGCTGA ATATGCGAAGGTAGCCTCGGACCTTGAAGCTGCGAAATTGAAAATAAAGCAGCTGGAAAA GAAGCTCAGGTTGGGAGCTGGTCATAATAAGGACCAGATTTTATCCTTTAAAGAAAGAGT TTTGAAGCTGGGGAACAAGGAGAAGAATCCCGTTCAAGCTGAATCAAATGTTCAGTTGGA GCTCCAAAAGCTGAAGGACTTGGAAATCGAGGCTGATGAGTTGAGGAAATCTAACCAAAG GTTAAGAGCAGAAAACTCGACAGTTGGTGATAAACTGGAATATGTTCAGCTGATTGCCAT TTCTGCTATGGAAAATAATGCAGCAGAAGCACTGAAAGAAGAAAGTCTACAGCTGAGAAA GCAAAATGAAGATTTAGTAAAGAAAATTGATCAAATTCAAGAAGGTCACTACAGCTATGT TGAACAAGTAGCCTATCTTAGATGGATAAATGCTTGCTTGCGGTATGAGCTGAGGAACTT TAAGCCTGCTCCAGGAGAAACAACTGCAAGGGATCTCAGTAAAACGTTAAGCCCTGAATC TAGGAAGAAAGCCAAGCAACTAATTGTTGAATATGCAGCTAAAGAAGACCAAGGGGACAG GGGAATCCATGTTTTGGATCTTGATTCTGGCCAGTTATCCTCCCAAGAACCCTATCTTAT GAATTCGGGTGAGTTTGATGGTACTTCTATTGCTAATTCTTCAACCCATAAGACTGACAC TTCAAACAAAAGCACAATCTTTCGTAAGGTTATGAGAATAATACGGGCAAAGGACCATCA TCATAATCATTCAGAAATGGTTCACAAGACTGAAGAGAATGCAGCAAGATGCTCTTATTA TTCTTCTGGGTACTGTTCAGATATGTCTGTCGTAGATACCGGAGCTATTAGGCCCCAGAG CAGATCAAGAACACCATCTCCAGGTCCGTCCAAACAACTTGTAGCTTTCCATTCATTTGA TCAAGGCTCTACAAGCAGTAAAGGAGAAAGCAGAAACTATCCGACACGTAGAAGGAGATA TAGTGATGTGGGCTCACTGGACTATATATCAAAGCGTCTTGCTGAATCACCTCAAGAAAA AGGAAATAACCATGACCAAGAAAATGTTCATAAATCTGAGTTGGCGAAATATGCAGAAGC TTTGAAAGGATCTCGCTCTAAAGAAGCAGTTCGCAAGAGATCAGCATCAGTTAGTTTCTT CTAACTTCAAGAAAATATACAAGATTATGCCAGTTTTTTGTTGCCTCAACATTGTTGCCC CTCTACATCATTAGAGGTAGCCTAGGTTCTATAGTTGTTTGATCCTTGATGATGGGAATC AACTCATAGAAACATGTTATACAGTTGTTTACTGTATCTAGTCCTACAAATATTATAGCT AGTGCAGCTTCTTCCATTGAAGTTGTAGTCAGAATTTTTTTAATTAGCAAAAGGAAACAG AAGAAAAGAGTATACATGTGTGTAACATTAGATATCAATGTTTGATTTTCTATGTAGCTA CTCTTTTGAGATGATTTTCTTTGTAGCTTTAGTTGCTGTTTTTTCAGGGATCTGTTCGGT ACGGAGGAGAACATTTTCCAATGTTCGGTTGGTCATTTTTAGAAAATAATTT