Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g060310.3.1
CDS Infomation

Chlorophyllide a oxygenase (AHRD V3.3 *** W9SD87_9ROSA)
Sequence

ATGTCCGCTATTGCTACTTCTGCTGCTCTCTTTTTTCCTTTCTCTTTTTGCCGCTCAACT
AAGACTTATACTAGAAAGTGTTTCAAAGGTGGATTTGGAGTGTTTGCAGTGTATGAGGAG
GCAGCGGGTACTGAGTTATCAAACAAGAAGAGCTCCTGGTTGACAATCTTTGATGTAGAA
GATCCAAGGTCAAAATTCCCTCAGTCTAAAGGGAAGTTCCTGGATGCAAATCAAGCTTTA
GAAGTTGCTAGATTTGATATACAGTATTGTGATTGGCGAGCTCGTCAAGACGTACTCACA
ATAATGCTCCTGCACGAAAAGGTTGTGGAAGTATTGAATCCTCTAGCACGGGAGTATAAA
TCTATTGGAACTGTGAAGAAGGAACTTGCGGATTTACAAGAAGCACTTTCTCAAGCCCAT
AAAGAGGTACATATATCTGAGGTGCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATG
GAAGCGTTGGTTAATGATAGGCTACTACCAGAGAGGACTACAGAAGAATCAGATTCCCCT
TCTTCATCCCCCGGTACATCTACAGTATCTAGAGATAATGTTAAAAGCAAGCAGCCTAGA
AGATCCCTCAATGTGTCAGGTCCTGTTCAAGAATACAGCCCCCATTTGAAGAACTTCTGG
TATCCTGTTGCTTTCTCCGCTGATATTAAGGATAATACCATGATACCAATTGAATGCTTT
GAGGAACCATGGGTGATTTTTCGTGGCAAAGATGGAAAACCTGGATGTGTCCGGAACACA
TGTGCACATAGAGCCTGCCCCCTTCATTTGGGTTCAGTGAAAGAGGGTCGAATTCAATGC
CCTTATCATGGGTGGGAATATTCAACAGACGGAAAATGTGAGAAAATGCCATCAACAAAA
TTTCTGAATGTCAAGATCAAATCTCTGCCATGCTTTGAGCAAGAAGGAATGATATGGATA
TGGCCTGGAAATGATCCTCCTACAGCCACTCTTCCTTCTCTACTTCCACCTTCTGGATTT
CAAATCCATGCAGAGATAGTGATGGAACTTCCCGTGGAACATGGGTTGCTTTTAGACAAT
CTGTTGGATCTTGCCCATGCGCCTTTCACCCATACATCTACGTTTGCTAAAGGATGGAGT
GTCCCAAGCTTTGTAAATTTTTTGACTCCGGCATCTGGTCTGCAAGGATATTGGGATCCT
TATCCAATAGATATGGAATTTCGACCACCTTGTATGGTTCTATCAACCATTGGAATCTCA
AAGCCAGGCAAATTGGAGGGGCAGAGCACCAGAGAGTGCTCTACACATCTTCACCAACTT
CATGTATGTTTACCTGCATCTCGACAGAAGACAAGGTTGCTATATAGGATGTCACTGGAT
TTTGCTCCCATATTAAAACACATGCCTTTCATGCAATATGTGTGGAGGCATTTCGCTGAA
CAGGTTTTAAATGAAGACCTACGGCTTGTGATTGGTCAACAAGACCGGATGCTCAAGGGT
GCTAACATTTGGAACCTGCCTGTATCATACGATAAGCTAGGAGTGAGGTATAGAATATGG
AGAGATGCTGTAGAGAGTGGAGCAAAGCAATTGCCATTCAGCAAATGA

Peptide Sequence

PEP ID

Solyc06g060310.3.1
PEP Infomation

Chlorophyllide a oxygenase (AHRD V3.3 *** W9SD87_9ROSA)
Sequence

MSAIATSAALFFPFSFCRSTKTYTRKCFKGGFGVFAVYEEAAGTELSNKKSSWLTIFDVE
DPRSKFPQSKGKFLDANQALEVARFDIQYCDWRARQDVLTIMLLHEKVVEVLNPLAREYK
SIGTVKKELADLQEALSQAHKEVHISEVRVSAALDKLAYMEALVNDRLLPERTTEESDSP
SSSPGTSTVSRDNVKSKQPRRSLNVSGPVQEYSPHLKNFWYPVAFSADIKDNTMIPIECF
EEPWVIFRGKDGKPGCVRNTCAHRACPLHLGSVKEGRIQCPYHGWEYSTDGKCEKMPSTK
FLNVKIKSLPCFEQEGMIWIWPGNDPPTATLPSLLPPSGFQIHAEIVMELPVEHGLLLDN
LLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGIS
KPGKLEGQSTRECSTHLHQLHVCLPASRQKTRLLYRMSLDFAPILKHMPFMQYVWRHFAE
QVLNEDLRLVIGQQDRMLKGANIWNLPVSYDKLGVRYRIWRDAVESGAKQLPFSK*

Transcript Sequence

Transcript ID

Solyc06g060310.3.1
Transcript Infomation

Chlorophyllide a oxygenase (AHRD V3.3 *** W9SD87_9ROSA)
Sequence

AAAATCGCCGTCTCTTTCATCTTTAATTACAAAAAATTAAAAAAAATAAAATAGCAACTG
CTGCTGCTGCTTTAGCCCCGCCATGTCCGCTATTGCTACTTCTGCTGCTCTCTTTTTTCC
TTTCTCTTTTTGCCGCTCAACTAAGACTTATACTAGAAAGTGTTTCAAAGGTGGATTTGG
AGTGTTTGCAGTGTATGAGGAGGCAGCGGGTACTGAGTTATCAAACAAGAAGAGCTCCTG
GTTGACAATCTTTGATGTAGAAGATCCAAGGTCAAAATTCCCTCAGTCTAAAGGGAAGTT
CCTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATTTGATATACAGTATTGTGATTGGCG
AGCTCGTCAAGACGTACTCACAATAATGCTCCTGCACGAAAAGGTTGTGGAAGTATTGAA
TCCTCTAGCACGGGAGTATAAATCTATTGGAACTGTGAAGAAGGAACTTGCGGATTTACA
AGAAGCACTTTCTCAAGCCCATAAAGAGGTACATATATCTGAGGTGCGGGTTTCTGCTGC
TTTAGATAAGCTAGCTTACATGGAAGCGTTGGTTAATGATAGGCTACTACCAGAGAGGAC
TACAGAAGAATCAGATTCCCCTTCTTCATCCCCCGGTACATCTACAGTATCTAGAGATAA
TGTTAAAAGCAAGCAGCCTAGAAGATCCCTCAATGTGTCAGGTCCTGTTCAAGAATACAG
CCCCCATTTGAAGAACTTCTGGTATCCTGTTGCTTTCTCCGCTGATATTAAGGATAATAC
CATGATACCAATTGAATGCTTTGAGGAACCATGGGTGATTTTTCGTGGCAAAGATGGAAA
ACCTGGATGTGTCCGGAACACATGTGCACATAGAGCCTGCCCCCTTCATTTGGGTTCAGT
GAAAGAGGGTCGAATTCAATGCCCTTATCATGGGTGGGAATATTCAACAGACGGAAAATG
TGAGAAAATGCCATCAACAAAATTTCTGAATGTCAAGATCAAATCTCTGCCATGCTTTGA
GCAAGAAGGAATGATATGGATATGGCCTGGAAATGATCCTCCTACAGCCACTCTTCCTTC
TCTACTTCCACCTTCTGGATTTCAAATCCATGCAGAGATAGTGATGGAACTTCCCGTGGA
ACATGGGTTGCTTTTAGACAATCTGTTGGATCTTGCCCATGCGCCTTTCACCCATACATC
TACGTTTGCTAAAGGATGGAGTGTCCCAAGCTTTGTAAATTTTTTGACTCCGGCATCTGG
TCTGCAAGGATATTGGGATCCTTATCCAATAGATATGGAATTTCGACCACCTTGTATGGT
TCTATCAACCATTGGAATCTCAAAGCCAGGCAAATTGGAGGGGCAGAGCACCAGAGAGTG
CTCTACACATCTTCACCAACTTCATGTATGTTTACCTGCATCTCGACAGAAGACAAGGTT
GCTATATAGGATGTCACTGGATTTTGCTCCCATATTAAAACACATGCCTTTCATGCAATA
TGTGTGGAGGCATTTCGCTGAACAGGTTTTAAATGAAGACCTACGGCTTGTGATTGGTCA
ACAAGACCGGATGCTCAAGGGTGCTAACATTTGGAACCTGCCTGTATCATACGATAAGCT
AGGAGTGAGGTATAGAATATGGAGAGATGCTGTAGAGAGTGGAGCAAAGCAATTGCCATT
CAGCAAATGAAAACATGGAACTAATCCATGGATAGATTTTACATCTCAAGATGATTGATC
GTACATTCTAAACAACCTTAGCTCTCTGAAGAACTTCAGTTGCCGAGAATCTTAGTTTGG
TATATAACACGATTGCCACACTTGTTGCTCTGAGGATATACCAGAGCATCCTGAAAATGA
GATGATTTCAGTATAGCTTCCCTAGTAAAAATTAAACTGTACACTAATTGTTTTTAGGTT
CATGTACAGTTTAAACACCCTTGACCCCTGCCCATCAATTCTTTCATGTTTTCCCTAGTA
TGCCTCCTAGAAAATGTGCAGGCTCTATTGAAAGTCATGGAAATGGTCCTCCAACTTGTA
TCATAGTATCAATCTTTTCGAATTTTTGAATTGAATACACAATTTTTTCGCCAAAATGAA
ACGAGAAGATCTGATTGTCTAGCTGTTTTCTCCAAACATATGTTCTTTCAGTGGCGAGTC
CATGGATGGTATGGAAATTTGATTGGTAACTGGGCAGGTCTAAGTTGGTCCAATTGGACA
CCCTTCATCGGAAATAGGATACATATATATAACATTTTGAGCACCAATAGTTACCACCAG
CGTAGTGGCAAGGATATGGATGAAACTACATGGCGCCAGTTTTGATTCCTAAAGCTCAAA
TTTATTCCACAAACTCATTGATTACAAGACAGGAAGAGGAACATAATTACAAAGTATTTC
AAACCCAGAAGCGACTGTAATTACATAATATAGAATATTCAGTCACAGTGCATTACCACA
AAAGGGACAGAATCGGAAATCGGCGTCCACTTCCCGGCGACAGAACTGACATCTAAGTAC
GTCCGCCGTAGACGACGGCGGAGGAGGAGTTAGAGATTGAGGGAAGAAGAGTTTGCAGTC
GTTGCAGTACATCACCGGCTCTTTTCCCGGCCATCTCCACACCGGAACAAAGAAGAGCTT
GAGAACCTTTTCATAGTCGACGAGGTCGGCGCGTGAACCGCACGCAATGCACCTCCCTGC
CCCGCTCTTCAATACCTGCCTCGCCTGC