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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g060170.3.1
CDS Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G33440.1)
Sequence

ATGGAAGAACAAACCCCCATTTTGAATTTGAATTTGAATAGAATCAAGGGAGGAGGAGGA
GGAATAAGGAGACCGTTATGGGTATCTGTGTTGGTTTTGTTCACTGTAATTGCTCTGTTT
AGTCTACATATCAATAAGGAATATTCAATTTTCTCGATCCCTTTGGATTTCATTTCGGGT
CGGGTAGGATTAGTGTCGAGTTATCAACAGAAGAGCTGCTCTGATTTCTTCAAACAGGTA
CCAGCGAGGAAGGTGGTGAAATCAATCAGCGATTTCGGTGGAATTGGGGATGGAAAAACC
TCAAATACAAAGGCGTTTCATCGGGCCATGGAGTTTATGTCCCGTTTCACGGAGAGTGGT
GGGTCCCAGCTTGTTGTTCCTAAAGGTCGATGGCTTACTGGTAGTTTCAATCTTACCAGC
AATTTCACACTCTTCCTCGAATATGGCGCTGTTATCCTCGGTTCTCAGGATCCAGATGAA
TGGCCGATAATCGACGCGCTGCCTTCATATGGAAGAGGGAGAGAAAGACTTGGAGCGAGA
CATATTAGCCTTATTCATGGAAATGGCCTCACCAATGTTGTAATTACAGGGGAAAATGGA
ACTGTAGATGGTCAGGGAAAGATGTGGTGGGATCTTTGGTGGAATAGAACCCTGGTACAC
ACCAGAGGCCACCTTGTTGAACTGATTAACTCGCAGAACATCCTCATCCAAAATCTTACA
CTCATGAACTCTCCATTTTGGACAATTCATCCTGTCTATTGCAGGAATATTGTAATTAGA
AACATGACTATTTTGGCTCCTCTCAATGCCCCTAACACAGATGGCATTGATGCAGACTCC
AGCTTGAATGTCTGCATTGAAGACTGTTACATTGAGAGTGGTGATGACCTTATATCAGTG
AAAAGCGGGTGGGATCAGTATGGTATGAAAATGGCTCGTCCAAGCTCAAACATCATTGTA
AGGAGAGTGAAAGGCACAACCCCAACATGCTCAGGGGTTGGTATCGGCAGTGAGATGTCT
GGAGGTGTTTCTAATGTCCTCATAGAAGACTTATATGTTAGAGATTCTGCAGCTGGTGTA
CGGATCAAAACTGATATTGGAAGAGGTGGATACATCGTCAATATTACAATCAATAACATG
AGAACGGAAAGAGTGAAGGTACCCATTAGATTTAGCAGGGGAGCAAATGACCACCCTGAT
GAGAAATGGGATCCTAAAGCCCTACCTAAAGTAAGAGGTATTTTTATCAGTAATGTGGTC
AGTCTAGAATCAAAGAGACCTCCCTTGCTAGTAGGCATAGAGGAAGCACCATTTGAGGAC
ATACACATGAAAAACATCAGTTTATTTGGGTTAGCCCCATCAATGAAGTGGAATTGTGAA
TATATCTCTGGTTCTAGCTGCAGTGTTTTCCCTGCACCATGTTCTCAGTTGCTGAAGAAT
GAATCAACAATTCAGTGTCCAAATTGA

Peptide Sequence

PEP ID

Solyc06g060170.3.1
PEP Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G33440.1)
Sequence

MEEQTPILNLNLNRIKGGGGGIRRPLWVSVLVLFTVIALFSLHINKEYSIFSIPLDFISG
RVGLVSSYQQKSCSDFFKQVPARKVVKSISDFGGIGDGKTSNTKAFHRAMEFMSRFTESG
GSQLVVPKGRWLTGSFNLTSNFTLFLEYGAVILGSQDPDEWPIIDALPSYGRGRERLGAR
HISLIHGNGLTNVVITGENGTVDGQGKMWWDLWWNRTLVHTRGHLVELINSQNILIQNLT
LMNSPFWTIHPVYCRNIVIRNMTILAPLNAPNTDGIDADSSLNVCIEDCYIESGDDLISV
KSGWDQYGMKMARPSSNIIVRRVKGTTPTCSGVGIGSEMSGGVSNVLIEDLYVRDSAAGV
RIKTDIGRGGYIVNITINNMRTERVKVPIRFSRGANDHPDEKWDPKALPKVRGIFISNVV
SLESKRPPLLVGIEEAPFEDIHMKNISLFGLAPSMKWNCEYISGSSCSVFPAPCSQLLKN
ESTIQCPN*

Transcript Sequence

Transcript ID

Solyc06g060170.3.1
Transcript Infomation

Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G33440.1)
Sequence

CTGTCATGGTAGAATAAAACAGACACATGCCCACTAAAACAAGAGTTATATTTAAATATT
ACGACGCACTTTGTGTGATCGAAAGGCACCTTCCTCTTCACCATTTCTCCATTAATTATT
CATTGTGATTCCATCATAACAAGACAAAGAAAAATCCAAAAACCCAATCACCAGCCTTGA
GTTCTTATTCTACAAGTTTTGATGACTCATGAATAGCCCAATCGTTGATAAAGAGAATTT
CTTCTTCTTTTTTCTCTGCATGTAGACATAGGTTGTGTCTACATGCAGAGACATTATGGA
AGAACAAACCCCCATTTTGAATTTGAATTTGAATAGAATCAAGGGAGGAGGAGGAGGAAT
AAGGAGACCGTTATGGGTATCTGTGTTGGTTTTGTTCACTGTAATTGCTCTGTTTAGTCT
ACATATCAATAAGGAATATTCAATTTTCTCGATCCCTTTGGATTTCATTTCGGGTCGGGT
AGGATTAGTGTCGAGTTATCAACAGAAGAGCTGCTCTGATTTCTTCAAACAGGTACCAGC
GAGGAAGGTGGTGAAATCAATCAGCGATTTCGGTGGAATTGGGGATGGAAAAACCTCAAA
TACAAAGGCGTTTCATCGGGCCATGGAGTTTATGTCCCGTTTCACGGAGAGTGGTGGGTC
CCAGCTTGTTGTTCCTAAAGGTCGATGGCTTACTGGTAGTTTCAATCTTACCAGCAATTT
CACACTCTTCCTCGAATATGGCGCTGTTATCCTCGGTTCTCAGGATCCAGATGAATGGCC
GATAATCGACGCGCTGCCTTCATATGGAAGAGGGAGAGAAAGACTTGGAGCGAGACATAT
TAGCCTTATTCATGGAAATGGCCTCACCAATGTTGTAATTACAGGGGAAAATGGAACTGT
AGATGGTCAGGGAAAGATGTGGTGGGATCTTTGGTGGAATAGAACCCTGGTACACACCAG
AGGCCACCTTGTTGAACTGATTAACTCGCAGAACATCCTCATCCAAAATCTTACACTCAT
GAACTCTCCATTTTGGACAATTCATCCTGTCTATTGCAGGAATATTGTAATTAGAAACAT
GACTATTTTGGCTCCTCTCAATGCCCCTAACACAGATGGCATTGATGCAGACTCCAGCTT
GAATGTCTGCATTGAAGACTGTTACATTGAGAGTGGTGATGACCTTATATCAGTGAAAAG
CGGGTGGGATCAGTATGGTATGAAAATGGCTCGTCCAAGCTCAAACATCATTGTAAGGAG
AGTGAAAGGCACAACCCCAACATGCTCAGGGGTTGGTATCGGCAGTGAGATGTCTGGAGG
TGTTTCTAATGTCCTCATAGAAGACTTATATGTTAGAGATTCTGCAGCTGGTGTACGGAT
CAAAACTGATATTGGAAGAGGTGGATACATCGTCAATATTACAATCAATAACATGAGAAC
GGAAAGAGTGAAGGTACCCATTAGATTTAGCAGGGGAGCAAATGACCACCCTGATGAGAA
ATGGGATCCTAAAGCCCTACCTAAAGTAAGAGGTATTTTTATCAGTAATGTGGTCAGTCT
AGAATCAAAGAGACCTCCCTTGCTAGTAGGCATAGAGGAAGCACCATTTGAGGACATACA
CATGAAAAACATCAGTTTATTTGGGTTAGCCCCATCAATGAAGTGGAATTGTGAATATAT
CTCTGGTTCTAGCTGCAGTGTTTTCCCTGCACCATGTTCTCAGTTGCTGAAGAATGAATC
AACAATTCAGTGTCCAAATTGATGAAGTTTAGTGTTCCTTCTTCGGAACAAGCTTGGATA
GTCGAAATTTCCAACTTGAAATGAATTTAGATCAAGTCGCAATTGAGATGATTTTGCTTT
CGTGAATCAACATGAATCTCAATGCACTTCTGGATGCCTGTCGATCCCTGTTGCTGCAAA
CATCAGCATGCAATCCTTCTCCAGATCGAATCTAAGC