Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g053810.3.1
CDS Infomation

P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT1G04280.2)
Sequence

ATGCTGCTGAAATATGGAAAAGTGCCTCTACTGTGCGTAAGTAGTCTTGTAGGAATAATC
TCAGCTTTCGCCATGCATCATCTTCGCAATTATAAATCTAAATCACCCAAATTTGATGAT
CCGATGAATCATCAACTTTCACCTATTTTTGACACAAGCACTGAATCTGGCCGCGCTGCT
GGTAGACTCGAAAAGTTTTCTCATTATGTTGCAAGGCAATTGGGATTTAAAGATGAAAGT
GAGTGTGTTGGGTTATGTGAGCTAGTACAAGAATACCTGAAGAGATCCAAAGGATGTGAT
AATAGTATTTTTGAATACTTTGCAAATGAAGAAGATGCTGAATCTTTGTTTGTCAAATTG
GAAAATGAATTAGAGAGATGCATTCTTGCTTATTTTGCTTTTCATTGGAGTAAAGCTTCT
ATGTTAATTACTCAGGTGTTAAGTGTTGATTCTGAGCAGAAAAGACTCAAGGATTTGGTG
TTGGCAGCTACAAGGAAGCAGAGATTTGAGAAGATAACAAAAGATTTGAAAGTAACAAGG
GTATTTTCTACGCTGGTCGACGAGATGAAGGCGATCGGAACGGTATCATCTAACGGTACT
GGTGAGTCCAGATGTACGGACGTGATGGTGCCGGTGGCTCACAGTCAAAGAAGTCCAGTG
CTCCTCCTTATGGGTGGTGGAATGGGAGCTGGCAAAAGTACTGTCCTTAAAGACATCCTC
AAACAGCCATTCTGGTTGGAAGCAGTTGCAAATGCAGTGGTAGTAGAGGCAGATGCTTTC
AAGGAGACGGATGTAATTTACAGAGCCCTTAGCTCAAGAGGTCATCATAATGACATGCTT
CAAACTGCTGAATTGGTACATCAAAATTCAACAGATGCAGCATCATCTCTGCTAGTCACA
GCTCTTAACGAGGGGCGCGATGTTATAATGGACGGAACTTTATCATGGGAGCCATTTGTT
GAGCAGACCATAGCCATGGCAAGAAATGTACACAAACATCGATATCGAATGGGGGAAGGT
TATAAGGTTGCAGAGGATGGCACAGTTACTGAAAATTATTGGGAACAAATTGAACAGGAA
AATGGAGAAGAGTCAGCTAATAAGATCAGTAAACCTTACAGAATAGAATTGGTGGGAGTT
GTATGTGATCCTTACCTAGCTGTTGTTAGAGGCATAAGGCGAGCTATAGCAACAGGGAGG
GCAGTCAGAGTAAAGCCCCAATTGAAATCTCACAAGAGATTTGCAAATGCATTTCCCAAA
TACTGTGAACTTGTTGATAACGCTAGGCTATACTGCACCAATGCCTTAGGCTCAAAACCA
CCGTTAATAGCATGGAAAGACGGAGCGAACAAAATGTTGGTGGAACCAGAGGACATCAAG
TGTTTGGAAATGGTAAAAAAGTTGAAGGAAGAAGCAGAATCGATTTACGAGCTGTATGAG
GGAGATGATGTATTGTCTCTGGAGACTCCTGGTTCAGTCTGGAAAGACATGGTTTTAATA
CCTACAAGGTCTACTCTCCAACAAGAGCTCAAAACTGCTATTTTAAAGATTGAAAACAGG
GGAAAATAG

Peptide Sequence

PEP ID

Solyc06g053810.3.1
PEP Infomation

P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT1G04280.2)
Sequence

MLLKYGKVPLLCVSSLVGIISAFAMHHLRNYKSKSPKFDDPMNHQLSPIFDTSTESGRAA
GRLEKFSHYVARQLGFKDESECVGLCELVQEYLKRSKGCDNSIFEYFANEEDAESLFVKL
ENELERCILAYFAFHWSKASMLITQVLSVDSEQKRLKDLVLAATRKQRFEKITKDLKVTR
VFSTLVDEMKAIGTVSSNGTGESRCTDVMVPVAHSQRSPVLLLMGGGMGAGKSTVLKDIL
KQPFWLEAVANAVVVEADAFKETDVIYRALSSRGHHNDMLQTAELVHQNSTDAASSLLVT
ALNEGRDVIMDGTLSWEPFVEQTIAMARNVHKHRYRMGEGYKVAEDGTVTENYWEQIEQE
NGEESANKISKPYRIELVGVVCDPYLAVVRGIRRAIATGRAVRVKPQLKSHKRFANAFPK
YCELVDNARLYCTNALGSKPPLIAWKDGANKMLVEPEDIKCLEMVKKLKEEAESIYELYE
GDDVLSLETPGSVWKDMVLIPTRSTLQQELKTAILKIENRGK*

Transcript Sequence

Transcript ID

Solyc06g053810.3.1
Transcript Infomation

P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT1G04280.2)
Sequence

GAAAATTCCAAATAAAGTTCATACTAGATATTTTAAAAATTCACATTTTCTTCAGGTCCA
CCACACCACTCACGAAAAACAAATATGTACCTAAACCTATATGAACCATACAATGATCAC
TTTTTTACTTTCATCTTCGACGAGTTGACTCAATCATCCTTTTTTTTTCTCTCTTACCCC
ATTAGCTTAATTTTCTCAAATAATTCATACTCCACTACAAAATTAAAGTCTAAACGAAGA
AATAAAAATTTCAAACTTTTTATTTTAGTTGAAAAGAAAAAAAAAATCAAACATGCTGCT
GAAATATGGAAAAGTGCCTCTACTGTGCGTAAGTAGTCTTGTAGGAATAATCTCAGCTTT
CGCCATGCATCATCTTCGCAATTATAAATCTAAATCACCCAAATTTGATGATCCGATGAA
TCATCAACTTTCACCTATTTTTGACACAAGCACTGAATCTGGCCGCGCTGCTGGTAGACT
CGAAAAGTTTTCTCATTATGTTGCAAGGCAATTGGGATTTAAAGATGAAAGTGAGTGTGT
TGGGTTATGTGAGCTAGTACAAGAATACCTGAAGAGATCCAAAGGATGTGATAATAGTAT
TTTTGAATACTTTGCAAATGAAGAAGATGCTGAATCTTTGTTTGTCAAATTGGAAAATGA
ATTAGAGAGATGCATTCTTGCTTATTTTGCTTTTCATTGGAGTAAAGCTTCTATGTTAAT
TACTCAGGTGTTAAGTGTTGATTCTGAGCAGAAAAGACTCAAGGATTTGGTGTTGGCAGC
TACAAGGAAGCAGAGATTTGAGAAGATAACAAAAGATTTGAAAGTAACAAGGGTATTTTC
TACGCTGGTCGACGAGATGAAGGCGATCGGAACGGTATCATCTAACGGTACTGGTGAGTC
CAGATGTACGGACGTGATGGTGCCGGTGGCTCACAGTCAAAGAAGTCCAGTGCTCCTCCT
TATGGGTGGTGGAATGGGAGCTGGCAAAAGTACTGTCCTTAAAGACATCCTCAAACAGCC
ATTCTGGTTGGAAGCAGTTGCAAATGCAGTGGTAGTAGAGGCAGATGCTTTCAAGGAGAC
GGATGTAATTTACAGAGCCCTTAGCTCAAGAGGTCATCATAATGACATGCTTCAAACTGC
TGAATTGGTACATCAAAATTCAACAGATGCAGCATCATCTCTGCTAGTCACAGCTCTTAA
CGAGGGGCGCGATGTTATAATGGACGGAACTTTATCATGGGAGCCATTTGTTGAGCAGAC
CATAGCCATGGCAAGAAATGTACACAAACATCGATATCGAATGGGGGAAGGTTATAAGGT
TGCAGAGGATGGCACAGTTACTGAAAATTATTGGGAACAAATTGAACAGGAAAATGGAGA
AGAGTCAGCTAATAAGATCAGTAAACCTTACAGAATAGAATTGGTGGGAGTTGTATGTGA
TCCTTACCTAGCTGTTGTTAGAGGCATAAGGCGAGCTATAGCAACAGGGAGGGCAGTCAG
AGTAAAGCCCCAATTGAAATCTCACAAGAGATTTGCAAATGCATTTCCCAAATACTGTGA
ACTTGTTGATAACGCTAGGCTATACTGCACCAATGCCTTAGGCTCAAAACCACCGTTAAT
AGCATGGAAAGACGGAGCGAACAAAATGTTGGTGGAACCAGAGGACATCAAGTGTTTGGA
AATGGTAAAAAAGTTGAAGGAAGAAGCAGAATCGATTTACGAGCTGTATGAGGGAGATGA
TGTATTGTCTCTGGAGACTCCTGGTTCAGTCTGGAAAGACATGGTTTTAATACCTACAAG
GTCTACTCTCCAACAAGAGCTCAAAACTGCTATTTTAAAGATTGAAAACAGGGGAAAATA
GGTGTTTGCTTCAGTCCCCCAAAATATGAATGGGTCAAGAACTTCTTTATGTAATTCTTG
CTCAAAGCTCAAACATTTGTACAATTTTTTTTTTCTAC