Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g053400.3.1
CDS Infomation

Isopropylmalate synthase (AHRD V3.3 *** K4C627_SOLLC)
Sequence

ATGGCGTCTATCACCGCAAATCATCCAATCTCCGGTAAACCATTAATCTCATTCCGTCCC
AAAAACCCTTTACTTCAAACCCAAACTCTCTTCAATTTCAAACCATCAATCTCCAAGCAC
TCCAATTCTTCATTTTCCATTCCCGTTGTCCGCTGCTCAATCCGCCGTAGACCGGAATAT
ACTCCGAGTCACATTCCCGATCCAAACTATGTCCGGATATTCGACACCACTCTCCGTGAT
GGCGAACAATCACCAGGGGCTACAATGACTACAAAGGAGAAACTGGATGTTGCACGTCAG
TTAGCTAAGCTTGGTGTTGATATAATTGAGGCTGGTTTTCCTGCTTCTTCTGAAGCTGAT
CTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTGGGAATGGTGTTTATGAAGAGGGATAT
GTTCCGGTTATTTGTGGATTGGCGAGGTGTAATAAGAAGGATATTGATAAGGCGTGGGAG
GCTGTGAAGTATGCTAAGAAACCGAGGATTCATACGTTTATTGCTACAAGTGAGATACAT
ATGAATTATAAGCTGAAAATGAGTAGAGATCAAGTTGTTGAGAAAGCTAGGAGTATGGTG
GCTTATGCAAGGAGTATTGGGTGTGAGGATGTTGAATTTAGCCCTGAAGATGCTGGAAGA
TCTGATCCAGAGTTTCTTTATCATATCCTTGGAGAGGTTATCAAAGCTGGGGCAACAACC
CTTAACATCCCTGATACTGTTGGATACACTGTACCCGAAGAATTTGGACAATTGATTGCT
AAAATAAAAGCGAATACCCCAGGAGTTGAAGATGTGATCATTTCAACACACTGCCAGAAC
GATCTTGGGCTTTCTACTGCCAACACCTTAGCTGGAGCATGTGCAGGTGCAAGACAATTG
GAAGTGACCATCAATGGAATTGGTGAAAGAGCTGGAAATGCTTCTTTAGAGGAGGTTGTA
ATGGCCTTAAAGTGTCGTGGAGAGCAAGTACTAGGTGGCCTATATACAGGGATTAATACA
CAACATATACTCATGTCAAGCAAGATGGTAGAGGAGTATTCCGGACTTCATGTGCAGCCA
CACAAAGCCATTGTTGGAGCTAATGCCTTTGCTCATGAAAGTGGCATCCATCAGGATGGA
ATGTTAAAACACAAAGATACATATGAGATTATATCTCCTGAAGATATTGGGCTTAATCGT
GCTAATGAATCTGGTATTGTCCTTGGGAAACTCAGTGGGCGTCATGCTTTGCAAGCCAAA
ATGCTTGAGCTTGGATACGAGATTGAGGGCAAAGAACTTGATGACCTGTTCTGGCGATTC
AAATCTGTGGCTGAGAAGAAAAAGAAAATTACAGATGATGACCTGGTAGCACTGATGTCA
GATGAGGTTTTCCAGCCTCAATTTGTGTGGCAACTTCAAAATGTACAGGTTACTTCTGGA
AGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCATTGATGCTGATGGTCGAGAGCATATT
TCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGGCTTATAAGGCAGTTGATCTCATTGTT
AAGGTACCTGTAACACTCCTTGAGTATTCCATGAATGCAGTCACACAAGGTATAGATGCT
ATAGCTTCAACCAGAGTCTTAATTCGTGGAGAAAATGGCCATACATCAACCCATGCCGTA
ACTGGAGAGACTATTCACCGTACATTTAGTGGAACCGGAGCAGATATGGATATTGTCATC
TCCAGTGTCCGAGCCTATGTTGGTGCATTGAATAAGATGATGAGTTTCAGAAAACTAATG
GCGAAAAATAACAAACCCGAAAGCAGTGCAGTCGTATAG

Peptide Sequence

PEP ID

Solyc06g053400.3.1
PEP Infomation

Isopropylmalate synthase (AHRD V3.3 *** K4C627_SOLLC)
Sequence

MASITANHPISGKPLISFRPKNPLLQTQTLFNFKPSISKHSNSSFSIPVVRCSIRRRPEY
TPSHIPDPNYVRIFDTTLRDGEQSPGATMTTKEKLDVARQLAKLGVDIIEAGFPASSEAD
LEAVKLIAKEVGNGVYEEGYVPVICGLARCNKKDIDKAWEAVKYAKKPRIHTFIATSEIH
MNYKLKMSRDQVVEKARSMVAYARSIGCEDVEFSPEDAGRSDPEFLYHILGEVIKAGATT
LNIPDTVGYTVPEEFGQLIAKIKANTPGVEDVIISTHCQNDLGLSTANTLAGACAGARQL
EVTINGIGERAGNASLEEVVMALKCRGEQVLGGLYTGINTQHILMSSKMVEEYSGLHVQP
HKAIVGANAFAHESGIHQDGMLKHKDTYEIISPEDIGLNRANESGIVLGKLSGRHALQAK
MLELGYEIEGKELDDLFWRFKSVAEKKKKITDDDLVALMSDEVFQPQFVWQLQNVQVTSG
SLGLSTATVKLIDADGREHISCSVGTGPVDAAYKAVDLIVKVPVTLLEYSMNAVTQGIDA
IASTRVLIRGENGHTSTHAVTGETIHRTFSGTGADMDIVISSVRAYVGALNKMMSFRKLM
AKNNKPESSAVV*

Transcript Sequence

Transcript ID

Solyc06g053400.3.1
Transcript Infomation

Isopropylmalate synthase (AHRD V3.3 *** K4C627_SOLLC)
Sequence

AACAGTCTCTTACTTGAATTTTCAGTCTCTTCTCCCAGCCGCCATTAAAACCAGCACTCG
CAAACTCCAATTTCTCTTCTCCGGCAATGGCGTCTATCACCGCAAATCATCCAATCTCCG
GTAAACCATTAATCTCATTCCGTCCCAAAAACCCTTTACTTCAAACCCAAACTCTCTTCA
ATTTCAAACCATCAATCTCCAAGCACTCCAATTCTTCATTTTCCATTCCCGTTGTCCGCT
GCTCAATCCGCCGTAGACCGGAATATACTCCGAGTCACATTCCCGATCCAAACTATGTCC
GGATATTCGACACCACTCTCCGTGATGGCGAACAATCACCAGGGGCTACAATGACTACAA
AGGAGAAACTGGATGTTGCACGTCAGTTAGCTAAGCTTGGTGTTGATATAATTGAGGCTG
GTTTTCCTGCTTCTTCTGAAGCTGATCTTGAAGCTGTGAAATTGATAGCTAAGGAAGTTG
GGAATGGTGTTTATGAAGAGGGATATGTTCCGGTTATTTGTGGATTGGCGAGGTGTAATA
AGAAGGATATTGATAAGGCGTGGGAGGCTGTGAAGTATGCTAAGAAACCGAGGATTCATA
CGTTTATTGCTACAAGTGAGATACATATGAATTATAAGCTGAAAATGAGTAGAGATCAAG
TTGTTGAGAAAGCTAGGAGTATGGTGGCTTATGCAAGGAGTATTGGGTGTGAGGATGTTG
AATTTAGCCCTGAAGATGCTGGAAGATCTGATCCAGAGTTTCTTTATCATATCCTTGGAG
AGGTTATCAAAGCTGGGGCAACAACCCTTAACATCCCTGATACTGTTGGATACACTGTAC
CCGAAGAATTTGGACAATTGATTGCTAAAATAAAAGCGAATACCCCAGGAGTTGAAGATG
TGATCATTTCAACACACTGCCAGAACGATCTTGGGCTTTCTACTGCCAACACCTTAGCTG
GAGCATGTGCAGGTGCAAGACAATTGGAAGTGACCATCAATGGAATTGGTGAAAGAGCTG
GAAATGCTTCTTTAGAGGAGGTTGTAATGGCCTTAAAGTGTCGTGGAGAGCAAGTACTAG
GTGGCCTATATACAGGGATTAATACACAACATATACTCATGTCAAGCAAGATGGTAGAGG
AGTATTCCGGACTTCATGTGCAGCCACACAAAGCCATTGTTGGAGCTAATGCCTTTGCTC
ATGAAAGTGGCATCCATCAGGATGGAATGTTAAAACACAAAGATACATATGAGATTATAT
CTCCTGAAGATATTGGGCTTAATCGTGCTAATGAATCTGGTATTGTCCTTGGGAAACTCA
GTGGGCGTCATGCTTTGCAAGCCAAAATGCTTGAGCTTGGATACGAGATTGAGGGCAAAG
AACTTGATGACCTGTTCTGGCGATTCAAATCTGTGGCTGAGAAGAAAAAGAAAATTACAG
ATGATGACCTGGTAGCACTGATGTCAGATGAGGTTTTCCAGCCTCAATTTGTGTGGCAAC
TTCAAAATGTACAGGTTACTTCTGGAAGTCTTGGCCTTTCTACAGCAACTGTTAAGCTCA
TTGATGCTGATGGTCGAGAGCATATTTCTTGTTCTGTTGGAACGGGGCCAGTTGACGCGG
CTTATAAGGCAGTTGATCTCATTGTTAAGGTACCTGTAACACTCCTTGAGTATTCCATGA
ATGCAGTCACACAAGGTATAGATGCTATAGCTTCAACCAGAGTCTTAATTCGTGGAGAAA
ATGGCCATACATCAACCCATGCCGTAACTGGAGAGACTATTCACCGTACATTTAGTGGAA
CCGGAGCAGATATGGATATTGTCATCTCCAGTGTCCGAGCCTATGTTGGTGCATTGAATA
AGATGATGAGTTTCAGAAAACTAATGGCGAAAAATAACAAACCCGAAAGCAGTGCAGTCG
TATAGGTACTTCTGTGCAAATCAAGGTTATGGAACTTTTGCAACTGCACTGGAGCTTTAT
CATTTGTACAAAATGTAGGAGTCTGTTCAAAGAATTTGAGCCTGTAGTTTTCAAGAAAAC
AAAGCTTAATATGTCTGGTAGTGCTTGAAAATCATCTAAGTTTATGGTGTATCAGTTGGA
ACATTAGACACATTGTCCATATAACTTTGTTCATGCTCCCGTTTAACTAATTTATGAATC
TACATACCACGCAAGATTTTCGAAATGATTTCAGAAATTATGAAAATCTCTGTATTAATT
TTTATGTGGAGATGTTCTAACACTTGTATTTGATAAATCTAGCTTATGAACTTGCATTTT
TATAT