Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g053190.3.1
CDS Infomation

Ypt/Rab-GAP domain of gyp1p superfamily protein (AHRD V3.3 *** AT3G49350.1)
Sequence

ATGAAAGCTCTCAAACGAAGTCAGACTTCATCGTCTTCAAATTCACCTTCACCTTCACCT
TCTTCAAATTCATCATCGACAGCGACGGCGACGGCGACGTCCACGGCGGCGTCATCATCC
TCGTGGATTCATTTGAGATCAGTTCTATTTGTTGTTGCGTCCTCTTCACCAGCTTACTGT
GCTTCATCTGATCGAGGTCATCTCAAATCACCATGGTCTCATAGAAAGAGAAAACATGTC
CTTTCACCGCTTCGATGGAGAAGCTTTTTTGCCCCCGATGGAAAGCTTCGTAATGGAGGA
GTTAAATTTCTGAAGAAAGTTCGAAGCGGAGGAGTTGATCCTAGCATCAGGGCAGAGGTT
TGGCCTTTTCTCCTCGGGGTCTATGAATTGGACAGTTCCAAAAAAGAAAGAGACGCTGTA
AGAAAAAAGAACAGAAAGGAATATGTGATGCTTCGGAGGAAGTGCTGCCAACTACTGAGA
CACAATAGTGAAACCTTTAAGATGAAAGTGACGGGTGGAATCGGAAACAACGGAGACAGT
GGGAATCTCATGGAAGGGATGGATTTCCCCGATTATGAAGATGTCAGTGCCCTGGAATCC
CCCTCTAGTGGGGACCGGAGCCCATTTGTTGAGGATTCAGACAGTCACAGCAATTTAATG
TTGGATGAATTTTCTAGTTCCAAACGAGCCATGGAGCCAAATGATGTCTCCGACTCTGAG
TCGTCAGATTCTGATTCCTCTGTAGATCATGATGTGAATCATAGTTTCCTCTCTATAAGA
AGCATGTATGATACAGCCGAATTGCATTCCAAGGTTGACTCGTCTCCTTCAGAGACAGAA
GTCCAGAAACAGCCTTGCAATGCAGAAGATTTTGCTACATGGCAACGAATAATTCGGGTT
GATGCAGTTCGTGCAAATGAAGAATGGATAGCATATTCCACACCTCAGGCTGGAGTAGTA
TCAGATGGTCGTGCACGCTGTTCTGCGGAGGCTGTTGGATTGAAGGACTATGATCACCTA
GAGCCCTCAAGGATCTTCCATGCTGCTCGGTTAGTTGCCATCCTTGAAGCCTATGCGCTT
TATGACCCTGAAATTGGCTATTGCCAGGGAATGAGTGATTTGCTTTCACCAATTATTACT
GTGATGACAGAGGACCATGAAGCTTTTTGGTGCTTTGTTGGTTTCATGAGGAAGGCTCGA
CATAACTTTAGGCTTGATGAGGTTGGAATCAGGAGGCAACTAAATATTATTTCTAAGATT
ATCAAACATAAGGATTCACATCTCTATAGGCACTTGGAGAAGCTTCAAGCAGAGGATTGT
TTTTTTGTGTACAGGATGGTGGTAGTGCTCTTCAGGAGGGAATTGACTTTTGAGCAAACA
CTCTGCCTATGGGAGGTAATGTGGGCAGACCAGGTCGCTATTAGGGCTGGGATTGGGAAG
TCTGCTTGGAGTAGGATTAGGCAGCGTGCTCCACCAACAGATGATCTTTTGCTTTATGCA
ATTGCAGCATCTGTATTACAGAGGAGGAAACAAATCACTGAGAAGTATAGTAGCATGGAT
GAAATTTTAAGGGAGTGCAATAACATGGCTGGTCATCTTGATGTATGGAAGCTACTAGAT
GATGCTCATGATTTGGTGGTCACTCTCCATGACAAGATATAG

Peptide Sequence

PEP ID

Solyc06g053190.3.1
PEP Infomation

Ypt/Rab-GAP domain of gyp1p superfamily protein (AHRD V3.3 *** AT3G49350.1)
Sequence

MKALKRSQTSSSSNSPSPSPSSNSSSTATATATSTAASSSSWIHLRSVLFVVASSSPAYC
ASSDRGHLKSPWSHRKRKHVLSPLRWRSFFAPDGKLRNGGVKFLKKVRSGGVDPSIRAEV
WPFLLGVYELDSSKKERDAVRKKNRKEYVMLRRKCCQLLRHNSETFKMKVTGGIGNNGDS
GNLMEGMDFPDYEDVSALESPSSGDRSPFVEDSDSHSNLMLDEFSSSKRAMEPNDVSDSE
SSDSDSSVDHDVNHSFLSIRSMYDTAELHSKVDSSPSETEVQKQPCNAEDFATWQRIIRV
DAVRANEEWIAYSTPQAGVVSDGRARCSAEAVGLKDYDHLEPSRIFHAARLVAILEAYAL
YDPEIGYCQGMSDLLSPIITVMTEDHEAFWCFVGFMRKARHNFRLDEVGIRRQLNIISKI
IKHKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQVAIRAGIGK
SAWSRIRQRAPPTDDLLLYAIAASVLQRRKQITEKYSSMDEILRECNNMAGHLDVWKLLD
DAHDLVVTLHDKI*

Transcript Sequence

Transcript ID

Solyc06g053190.3.1
Transcript Infomation

Ypt/Rab-GAP domain of gyp1p superfamily protein (AHRD V3.3 *** AT3G49350.1)
Sequence

AGTTCAGTTTTTTGTTGCGAGTTATGGTGGAAAAGGGTATAATCGACATTCCTCATTAAT
CCTTTATCTCTCTTACCTCCTTTTTCTTTTCTTCTTTATGTTGTTGATTCAATCGGCACC
CTGCAGTTTTCATCGGCGGCAGCAGCAGCGGTGGTTTCTCGCTGAACCACCACCTTTCTA
ATGCCGGAGTAGTACTTTTTGCTTTCACGGCCTTGGCCGGACTTGCATTACCCGCCGCCG
TTAGCTAAGTTAAAAAAAAATTAAAAAATAACCGGATGAATTTTTCATTGTGAAAAGGAA
ATTACGTTATCACAGTTTCTTTTACGTCAATCTCACTTGTTGAAAACCCTAGAAATTTGT
TGAAGAGTAGAGTGATTACTTTGTAAATGAAAGCTCTCAAACGAAGTCAGACTTCATCGT
CTTCAAATTCACCTTCACCTTCACCTTCTTCAAATTCATCATCGACAGCGACGGCGACGG
CGACGTCCACGGCGGCGTCATCATCCTCGTGGATTCATTTGAGATCAGTTCTATTTGTTG
TTGCGTCCTCTTCACCAGCTTACTGTGCTTCATCTGATCGAGGTCATCTCAAATCACCAT
GGTCTCATAGAAAGAGAAAACATGTCCTTTCACCGCTTCGATGGAGAAGCTTTTTTGCCC
CCGATGGAAAGCTTCGTAATGGAGGAGTTAAATTTCTGAAGAAAGTTCGAAGCGGAGGAG
TTGATCCTAGCATCAGGGCAGAGGTTTGGCCTTTTCTCCTCGGGGTCTATGAATTGGACA
GTTCCAAAAAAGAAAGAGACGCTGTAAGAAAAAAGAACAGAAAGGAATATGTGATGCTTC
GGAGGAAGTGCTGCCAACTACTGAGACACAATAGTGAAACCTTTAAGATGAAAGTGACGG
GTGGAATCGGAAACAACGGAGACAGTGGGAATCTCATGGAAGGGATGGATTTCCCCGATT
ATGAAGATGTCAGTGCCCTGGAATCCCCCTCTAGTGGGGACCGGAGCCCATTTGTTGAGG
ATTCAGACAGTCACAGCAATTTAATGTTGGATGAATTTTCTAGTTCCAAACGAGCCATGG
AGCCAAATGATGTCTCCGACTCTGAGTCGTCAGATTCTGATTCCTCTGTAGATCATGATG
TGAATCATAGTTTCCTCTCTATAAGAAGCATGTATGATACAGCCGAATTGCATTCCAAGG
TTGACTCGTCTCCTTCAGAGACAGAAGTCCAGAAACAGCCTTGCAATGCAGAAGATTTTG
CTACATGGCAACGAATAATTCGGGTTGATGCAGTTCGTGCAAATGAAGAATGGATAGCAT
ATTCCACACCTCAGGCTGGAGTAGTATCAGATGGTCGTGCACGCTGTTCTGCGGAGGCTG
TTGGATTGAAGGACTATGATCACCTAGAGCCCTCAAGGATCTTCCATGCTGCTCGGTTAG
TTGCCATCCTTGAAGCCTATGCGCTTTATGACCCTGAAATTGGCTATTGCCAGGGAATGA
GTGATTTGCTTTCACCAATTATTACTGTGATGACAGAGGACCATGAAGCTTTTTGGTGCT
TTGTTGGTTTCATGAGGAAGGCTCGACATAACTTTAGGCTTGATGAGGTTGGAATCAGGA
GGCAACTAAATATTATTTCTAAGATTATCAAACATAAGGATTCACATCTCTATAGGCACT
TGGAGAAGCTTCAAGCAGAGGATTGTTTTTTTGTGTACAGGATGGTGGTAGTGCTCTTCA
GGAGGGAATTGACTTTTGAGCAAACACTCTGCCTATGGGAGGTAATGTGGGCAGACCAGG
TCGCTATTAGGGCTGGGATTGGGAAGTCTGCTTGGAGTAGGATTAGGCAGCGTGCTCCAC
CAACAGATGATCTTTTGCTTTATGCAATTGCAGCATCTGTATTACAGAGGAGGAAACAAA
TCACTGAGAAGTATAGTAGCATGGATGAAATTTTAAGGGAGTGCAATAACATGGCTGGTC
ATCTTGATGTATGGAAGCTACTAGATGATGCTCATGATTTGGTGGTCACTCTCCATGACA
AGATATAGACACCTTTTGCCTTCCAAAATTTTATACCACTTATTTGTTCTCTTTGCTAAA
TTCAGCATCAGTGAGTCGGTAAGTTTTTGTGGTGAGGAAGAACTTTCTACCTGACAAGTG
AAAACATTGCTGCTGCTGCTCTTTTTGGGTCAGAGATCGGGGTTATCTATAACTCTCAAC
TCTACCGAGTACAGGCACTGCTATTTGCTCGATTTCAGTGTAGCCATTATTAGAAAGCCT
GTGTTCCAGACTGTTCTACCATATGCTCAATATATATCGTTTAAGTTCTCATTTT