Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g051960.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4C5Y2_SOLLC)
Sequence

ATGGACTACGCCAGGCTTGGAAAACCCAAGCCTAAAGATCTCTCACGCCGAGAAATACTC
CCAAAATTTGAAGAGAATGTGCCAAATCAAAGGTCAAAACTCAAAATTGTGCTCATTTTC
TTTAGCATTCTTATAATTGCTGCTGCAATTTCTGCAGCAGTTGTAGTAACTGTGCGGAGT
ACTACTAAAACAGGTGCCACAGTGACTCATATAAAGCCCAGTCAGGCAATTTCACGAACA
TGTAGTCGAACTCGCTTCAAAACACTCTGTTTAAACTCTTTGCATGAATTCCCAGGCGCA
CTCACCGCTTCCGACGCGGAACTCGTCCACATTTCCGTCAATGCGACGCTTCAGCGTTTC
GGCAGGGCGTTTTACATGGCCTCCGATATTAACAGCCTTGTTATGGATAAACATACAAGG
TCCGCTTACGAGAGTTGTATTGAGCTGTTAGAAGATTCTGTTTACCTTCTATCTCGATCC
TTAACCTCTGTTGCTCCCGGCGCCGGAGAATCACCGCCGGGAAACAATAACGACGTGCAG
ACGTGGCTGAGCGCTGCGCTCACCAACCAGGACACGTGTACGGAAGGTTTCGCTGATGTT
CGCGGGAACGTGAAGGATCAGATGGCGACGAATTTGAAGGATTTGTCTCAATTAGTGAGC
AATTGCTTAGCCATTTTCGCTGCCGTGAACGGAAACGATGATTTCGCCGGAGTTCCGATT
CACAACCGTCGGCGGAGACTAATGAGTACTGTTTCGTCGGCGAAAAATGAGAATTTCCCG
AAATGGTTATCACGGAAGGATCGTAAGTTACTTAATGCGCCAGTTTCGACAATTCAAGCA
GATATGATCGTTTCAAAAGACGGTAACGGAACGTTCAAGACAATTGCAGAGGCAATTAAG
AAGCTCCCTGATTACAGTTCTCGCAGAATAATAATTTACGTCAAAGCAGGAAGGTATGAA
GAAGATATCCTGAAAGTAGGGAGGAAAAAGACGAACGTAATGTTCATAGGTGACGGTAAA
GGCCAGACGGTAATATCAGGTGGCAAAAGTGTATCACAGAATCTGACGACATTCCATACC
GCGTCTTTCGCGGCAACTGGAGCTGGATTCATTGCAAGAGACATTACATTTCAGAACTGG
GCTGGACCAGGCAAGCATCAAGCGGTAGCTCTTCGTATTGGTGCTGATCATGCTGTGATC
TATCGATGCAACATCATCGGATACCAAGACACGCTCTACGTGCACTCCCAGCGCCAATTC
TATCGTGAGTGTGATATCTATGGGACGGTTGATTTCATCTTTGGTAATGCAGCAGTGGTC
ATCCAAAACTGCAGCATTTACGCTCGAAAGCCAATGGACTTTCAAAAGAACACCATCACA
GCTCAAAACAGGAAAGATCCCAATCAAAACACTGGCATTTCAATCCATGCTTGCAAAATC
ATAGCCACATCTGACCTCCAGGCATCTAAAGGGAGCTTCCCCACATATCTAGGCCGACCA
TGGAAGCTGTACTCACGAACTGTTGTCATGTTATCTTACTTGGGCGATCACATACACCCG
CACGGTTGGTTAGAGTGGAATGCTACTTTCGCTCTTGATACATTGTATTATGGTGAATAT
ATGAACTATGGGCCGGGAGCAGCCGTGGGACAACGGGTGAATTGGCCGGGATATCGTGTG
ATCAATTCCACGGACGAGGCCAGCAAGTTCACTGTAGGTCAATTCATTTTCGGATCGTCG
TGGTTGCCTTCAACAGGGGTGGCGTTCTTGGCAGGTTTGAGTACCTGA

Peptide Sequence

PEP ID

Solyc06g051960.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4C5Y2_SOLLC)
Sequence

MDYARLGKPKPKDLSRREILPKFEENVPNQRSKLKIVLIFFSILIIAAAISAAVVVTVRS
TTKTGATVTHIKPSQAISRTCSRTRFKTLCLNSLHEFPGALTASDAELVHISVNATLQRF
GRAFYMASDINSLVMDKHTRSAYESCIELLEDSVYLLSRSLTSVAPGAGESPPGNNNDVQ
TWLSAALTNQDTCTEGFADVRGNVKDQMATNLKDLSQLVSNCLAIFAAVNGNDDFAGVPI
HNRRRRLMSTVSSAKNENFPKWLSRKDRKLLNAPVSTIQADMIVSKDGNGTFKTIAEAIK
KLPDYSSRRIIIYVKAGRYEEDILKVGRKKTNVMFIGDGKGQTVISGGKSVSQNLTTFHT
ASFAATGAGFIARDITFQNWAGPGKHQAVALRIGADHAVIYRCNIIGYQDTLYVHSQRQF
YRECDIYGTVDFIFGNAAVVIQNCSIYARKPMDFQKNTITAQNRKDPNQNTGISIHACKI
IATSDLQASKGSFPTYLGRPWKLYSRTVVMLSYLGDHIHPHGWLEWNATFALDTLYYGEY
MNYGPGAAVGQRVNWPGYRVINSTDEASKFTVGQFIFGSSWLPSTGVAFLAGLST*

Transcript Sequence

Transcript ID

Solyc06g051960.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4C5Y2_SOLLC)
Sequence

CTCTTACTACTGTATTTTCCAAAATTTAAAACCCAAAAATGGACTACGCCAGGCTTGGAA
AACCCAAGCCTAAAGATCTCTCACGCCGAGAAATACTCCCAAAATTTGAAGAGAATGTGC
CAAATCAAAGGTCAAAACTCAAAATTGTGCTCATTTTCTTTAGCATTCTTATAATTGCTG
CTGCAATTTCTGCAGCAGTTGTAGTAACTGTGCGGAGTACTACTAAAACAGGTGCCACAG
TGACTCATATAAAGCCCAGTCAGGCAATTTCACGAACATGTAGTCGAACTCGCTTCAAAA
CACTCTGTTTAAACTCTTTGCATGAATTCCCAGGCGCACTCACCGCTTCCGACGCGGAAC
TCGTCCACATTTCCGTCAATGCGACGCTTCAGCGTTTCGGCAGGGCGTTTTACATGGCCT
CCGATATTAACAGCCTTGTTATGGATAAACATACAAGGTCCGCTTACGAGAGTTGTATTG
AGCTGTTAGAAGATTCTGTTTACCTTCTATCTCGATCCTTAACCTCTGTTGCTCCCGGCG
CCGGAGAATCACCGCCGGGAAACAATAACGACGTGCAGACGTGGCTGAGCGCTGCGCTCA
CCAACCAGGACACGTGTACGGAAGGTTTCGCTGATGTTCGCGGGAACGTGAAGGATCAGA
TGGCGACGAATTTGAAGGATTTGTCTCAATTAGTGAGCAATTGCTTAGCCATTTTCGCTG
CCGTGAACGGAAACGATGATTTCGCCGGAGTTCCGATTCACAACCGTCGGCGGAGACTAA
TGAGTACTGTTTCGTCGGCGAAAAATGAGAATTTCCCGAAATGGTTATCACGGAAGGATC
GTAAGTTACTTAATGCGCCAGTTTCGACAATTCAAGCAGATATGATCGTTTCAAAAGACG
GTAACGGAACGTTCAAGACAATTGCAGAGGCAATTAAGAAGCTCCCTGATTACAGTTCTC
GCAGAATAATAATTTACGTCAAAGCAGGAAGGTATGAAGAAGATATCCTGAAAGTAGGGA
GGAAAAAGACGAACGTAATGTTCATAGGTGACGGTAAAGGCCAGACGGTAATATCAGGTG
GCAAAAGTGTATCACAGAATCTGACGACATTCCATACCGCGTCTTTCGCGGCAACTGGAG
CTGGATTCATTGCAAGAGACATTACATTTCAGAACTGGGCTGGACCAGGCAAGCATCAAG
CGGTAGCTCTTCGTATTGGTGCTGATCATGCTGTGATCTATCGATGCAACATCATCGGAT
ACCAAGACACGCTCTACGTGCACTCCCAGCGCCAATTCTATCGTGAGTGTGATATCTATG
GGACGGTTGATTTCATCTTTGGTAATGCAGCAGTGGTCATCCAAAACTGCAGCATTTACG
CTCGAAAGCCAATGGACTTTCAAAAGAACACCATCACAGCTCAAAACAGGAAAGATCCCA
ATCAAAACACTGGCATTTCAATCCATGCTTGCAAAATCATAGCCACATCTGACCTCCAGG
CATCTAAAGGGAGCTTCCCCACATATCTAGGCCGACCATGGAAGCTGTACTCACGAACTG
TTGTCATGTTATCTTACTTGGGCGATCACATACACCCGCACGGTTGGTTAGAGTGGAATG
CTACTTTCGCTCTTGATACATTGTATTATGGTGAATATATGAACTATGGGCCGGGAGCAG
CCGTGGGACAACGGGTGAATTGGCCGGGATATCGTGTGATCAATTCCACGGACGAGGCCA
GCAAGTTCACTGTAGGTCAATTCATTTTCGGATCGTCGTGGTTGCCTTCAACAGGGGTGG
CGTTCTTGGCAGGTTTGAGTACCTGAATAAGTTAATGGTATAAATGAACATATTTCCAAG
ATGGAATTTTATGTTTTGTGCAGTAATATATGATGAATAACATGATATGTCCCCATTAAT
AGTATTTTCATAAGATAGGTGGCTAAATTGAATTTGCTCCAGTATTGGTGATCTGACCGA
AGAAACATATTCCAGATTACAGCTTTCATTGTTTAGTAAGTGCATGTAATTTGTTTTTCT
TTCTTGATTTTATTAGATCATATATATACACCAGATTACAGCTTTCATTTTTATCATCTT
TCACACTTTATGATCATAT