Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g050530.3.1
CDS Infomation

Laccase (AHRD V3.3 *** I1M7Q3_SOYBN)
Sequence

ATGAGCTCTTTGTTATTCTATGCCATTTTGCTTCTCTTTGCTAATGTTGCCTCTTTAGCA
AAAGCCAAAGTTCATTACCATGACTTTGTTATTCAAGCAACGCCCGTGAAGAGGCTGTGC
AATACGCATAGTACTATAACTGTGAATGGGCAATTTCCTGGACCAACTTTGGAAGTGAAC
AATGGAGATACACTAGTGGTCAAGGTTGTCAATAGAGCTCAATATAATGTCACCATTCAT
TGGCATGGGGTGAGGCAAATGAGAACGGCATGGGCAGATGGACCAGAATTCATCACTCAG
TGTCCGATTAGACCAGGAGGGAGTTACACTTATAGGTTTACTATTCAAGGACAAGAAGGG
ACACTTTGGTGGCACGCCCATAGCTCGTGGCTCAGGGCCACTGCTTATGGAGCCTTAGTT
ATCCACCCAAAAGAAGGAACTACCTATCCATTCCCTAAGCCCAAGAGACAAACACCAATT
CTACTTGGTGAGTGGTGGGATGCAAACCCCATTGATGTTATTAGACAAGCCACACGAACG
GGAGCAGCACCTAATTCATCAGATGCTTACACCATCAATGGTCAACCGGGCGATCTTTAC
AAGTGTTCTAATCAAGATACTACCATAGTCCATGTGGACTCAGGTGAGACAAACCTCCTT
CGAGTCATCAACTCTGGACTCAACCAACAACTTTTCTTCACAGTGGCAAACCACAAGTTG
ACTGTTGTTGGAGCAGATGCATCTTATGTTAAACCATTCACGACATCAGTCCTTATGCTA
GGACCAGGCGAGACTACTGATGTCCTCATAACTGCTAATCAACCGCCAGCCAGATACTAC
ATGGCTGCACGTGCCTACGCAAGTGCACAAGGAGCACCCTTTGACAACACGACAACCACA
GCCATCTTAGAGTACAAGGCTGCTCCTTGCCCTGCTAAGGGTGTCAAGATAAACCCCGCT
TTCCCATCTCTACCAGCATTTAATGACACAGCCACCGCCACTGCCTTCACCAGTAGCTTC
AGGAGTGCAAGCAAAGTCGAAGTTCCCACTGAAATCGATGAAAATCTATTCTTCACAGTT
GGATTGGGACTCAACAATTGCCCTGCAGGGGCAAGTTCCAGCAGCTGTCAAGGTCCAAAT
GGAATGCGATTCACTGCCAGTATGAACAATGTGTCATTTGTGTTACCATCCAATTTCTCC
TTACTGCAAGCACATCACCAGGGAATACCTGGAGTTTTCTCAACAGATTTCCCATCAAGC
CCACCCGTTAAATTTGATTACACTGGTAATGTTAGCAGGTCACTCTGGCAACCTATTTCC
GCGACTAAAGTATACAAGTTAAAATATGGCGCGAGAGTACAGATTGTGTTACAGGGGACT
AGTATCGTCACAGCTGAAAACCACCCAATTCATCTTCACGGATACGATTTCTACATTCTT
GCTGAGGGATTTGGAAACTTCAATCCACAAACAGATACTTCTAAATTTAACCTTGTTGAT
CCACCTCTTCGTAATACTGCAAGTGTACCAGTCAATGGATGGTCCGTCATAAGATTTGTA
GCTGATAATCCAGGAATTTGGCTAATGCATTGTCACTTGGATGTGCACATCACTTGGGGT
TTGGCGATGGCATTTCTTGTGGAAAATGGAGTTACTGAATTAGAAGCAATAGAGGAGCCT
CCAGTTGACCTTCCTGTTTGTTAA

Peptide Sequence

PEP ID

Solyc06g050530.3.1
PEP Infomation

Laccase (AHRD V3.3 *** I1M7Q3_SOYBN)
Sequence

MSSLLFYAILLLFANVASLAKAKVHYHDFVIQATPVKRLCNTHSTITVNGQFPGPTLEVN
NGDTLVVKVVNRAQYNVTIHWHGVRQMRTAWADGPEFITQCPIRPGGSYTYRFTIQGQEG
TLWWHAHSSWLRATAYGALVIHPKEGTTYPFPKPKRQTPILLGEWWDANPIDVIRQATRT
GAAPNSSDAYTINGQPGDLYKCSNQDTTIVHVDSGETNLLRVINSGLNQQLFFTVANHKL
TVVGADASYVKPFTTSVLMLGPGETTDVLITANQPPARYYMAARAYASAQGAPFDNTTTT
AILEYKAAPCPAKGVKINPAFPSLPAFNDTATATAFTSSFRSASKVEVPTEIDENLFFTV
GLGLNNCPAGASSSSCQGPNGMRFTASMNNVSFVLPSNFSLLQAHHQGIPGVFSTDFPSS
PPVKFDYTGNVSRSLWQPISATKVYKLKYGARVQIVLQGTSIVTAENHPIHLHGYDFYIL
AEGFGNFNPQTDTSKFNLVDPPLRNTASVPVNGWSVIRFVADNPGIWLMHCHLDVHITWG
LAMAFLVENGVTELEAIEEPPVDLPVC*

Transcript Sequence

Transcript ID

Solyc06g050530.3.1
Transcript Infomation

Laccase (AHRD V3.3 *** I1M7Q3_SOYBN)
Sequence

TCTTCTTCTTTTCCTATATAACTAAAGCCTCAACTCTCTAATTTTTCACAAAACAGAGTT
TAAGTCAAAATTAACTAGTCTTTAACATGAGCTCTTTGTTATTCTATGCCATTTTGCTTC
TCTTTGCTAATGTTGCCTCTTTAGCAAAAGCCAAAGTTCATTACCATGACTTTGTTATTC
AAGCAACGCCCGTGAAGAGGCTGTGCAATACGCATAGTACTATAACTGTGAATGGGCAAT
TTCCTGGACCAACTTTGGAAGTGAACAATGGAGATACACTAGTGGTCAAGGTTGTCAATA
GAGCTCAATATAATGTCACCATTCATTGGCATGGGGTGAGGCAAATGAGAACGGCATGGG
CAGATGGACCAGAATTCATCACTCAGTGTCCGATTAGACCAGGAGGGAGTTACACTTATA
GGTTTACTATTCAAGGACAAGAAGGGACACTTTGGTGGCACGCCCATAGCTCGTGGCTCA
GGGCCACTGCTTATGGAGCCTTAGTTATCCACCCAAAAGAAGGAACTACCTATCCATTCC
CTAAGCCCAAGAGACAAACACCAATTCTACTTGGTGAGTGGTGGGATGCAAACCCCATTG
ATGTTATTAGACAAGCCACACGAACGGGAGCAGCACCTAATTCATCAGATGCTTACACCA
TCAATGGTCAACCGGGCGATCTTTACAAGTGTTCTAATCAAGATACTACCATAGTCCATG
TGGACTCAGGTGAGACAAACCTCCTTCGAGTCATCAACTCTGGACTCAACCAACAACTTT
TCTTCACAGTGGCAAACCACAAGTTGACTGTTGTTGGAGCAGATGCATCTTATGTTAAAC
CATTCACGACATCAGTCCTTATGCTAGGACCAGGCGAGACTACTGATGTCCTCATAACTG
CTAATCAACCGCCAGCCAGATACTACATGGCTGCACGTGCCTACGCAAGTGCACAAGGAG
CACCCTTTGACAACACGACAACCACAGCCATCTTAGAGTACAAGGCTGCTCCTTGCCCTG
CTAAGGGTGTCAAGATAAACCCCGCTTTCCCATCTCTACCAGCATTTAATGACACAGCCA
CCGCCACTGCCTTCACCAGTAGCTTCAGGAGTGCAAGCAAAGTCGAAGTTCCCACTGAAA
TCGATGAAAATCTATTCTTCACAGTTGGATTGGGACTCAACAATTGCCCTGCAGGGGCAA
GTTCCAGCAGCTGTCAAGGTCCAAATGGAATGCGATTCACTGCCAGTATGAACAATGTGT
CATTTGTGTTACCATCCAATTTCTCCTTACTGCAAGCACATCACCAGGGAATACCTGGAG
TTTTCTCAACAGATTTCCCATCAAGCCCACCCGTTAAATTTGATTACACTGGTAATGTTA
GCAGGTCACTCTGGCAACCTATTTCCGCGACTAAAGTATACAAGTTAAAATATGGCGCGA
GAGTACAGATTGTGTTACAGGGGACTAGTATCGTCACAGCTGAAAACCACCCAATTCATC
TTCACGGATACGATTTCTACATTCTTGCTGAGGGATTTGGAAACTTCAATCCACAAACAG
ATACTTCTAAATTTAACCTTGTTGATCCACCTCTTCGTAATACTGCAAGTGTACCAGTCA
ATGGATGGTCCGTCATAAGATTTGTAGCTGATAATCCAGGAATTTGGCTAATGCATTGTC
ACTTGGATGTGCACATCACTTGGGGTTTGGCGATGGCATTTCTTGTGGAAAATGGAGTTA
CTGAATTAGAAGCAATAGAGGAGCCTCCAGTTGACCTTCCTGTTTGTTAACACATGCTAT
CCACAACACTACAGAAATCATTTTGAATATTTTAGTTTATATCAATTATATTGTCTTTTT
TTTTTTGCTTAATTTCTTAATTTTTGGTTGAGTTAAGACTATTTTAAAATTGAACCCAAG
ATGTTCCAGATATATATGTTGTATTCTTTCAAGTCCAACAATTAATTGAGATGATTTCAT
TTCTGAATAAATTTTCATTTTCTCTAATAGTT