Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc06g048470.3.1
CDS Infomation	COP1-interacting-like protein, putative (AHRD V3.3 *** A0A072V1D3_MEDTR)
Sequence	ATGGTGGAGCAGGGTGTGGATGCTGATGTCTTGCTGGAGTATGTTGAATTTAAGATTTTT CCGAGTCAGGGGAGGTATGAGACACTTATGATCTATGGAGACAAGGCAGAGGCAGCATCC TCGGGGCTTCTGAAGCAGTTAATGCTACATTCTCCCAAAATTAAATCATTGCACTCCAAA GGCTCAGATTCCTGCTTCAAATTTAAGCCTCTGGGTAATCTTAGTGATGCCAAATGGTTT ACGAAATCCACGTTAATCAGGTTTCTTCGTATTATAAGTTCATCAGATATAATTGATGTG GCCAAGGCAATGGTAAATGAAATATCACAGCTTGAAGATGCTCGAAAGTTCCATCTTTCT TTGTACTCCAAGGGTCCTCAAGATCATACTGGGAGTGAGGAAACAGCAGATGTCAGCTAC TCAAATTCTACAGCACCAACAGTTGATCACGATGGTAACCCTTCTTCATCAGATGCTTCC AAGAATGAATTATTGCGAGCAATGGACTTGAGGCTCACTGCATTAACAGAAGAATTAGCT GCTGTTTTTGACCAAGCTGTTGGCACCAACTGCTCTTTTGGGGATATCACTAACATAGAG AAGTTCTCTTATTATTTTGGAGCTATTGACTTAAGGAACTGTCTGCAGAAGTTTGTTGCA TTGAGGCAGGAGAACACAAATGGTGATTCTCTTGGTAAAGAGCCACCTCTCTCTAAAAAT GATGCCAGGAATGACAGAACTGGTTCAGTAGGGAGTACTTCTAAGACATCCAAACCGCCA CAATCAGATACAGCTGTGAAATATAGTGCCTCGCCTGCGAAAGCTGCACAGCTCGAGAGG CAAAGCTCATCAGCAAGTGAGGAATCAACTTTGACAAGTGAGGAGGAACAGCCATCGGAG GAAAGGAGTCGGACACTTATAAGATCCGCATCACCAAGGAGGTCTGCATCTCCAATGCGA AGAGTCCAAATTGGACGCTCTGGCTCACGACGATCCACTGCTTTAACAATAAAGAGTCTG AACTTCTTTCCTGCCAGGGAAAGGTCAGTCTCTCATAGAGATGAATCTGCAAGTGATTGT GATGAGCAAGCACATGAGCTAACCTCAAAAAAATCTGAGAAAAATTTACAAAGAATGAGT GTGCAAGATGCAATTCATCTTTTTGAAAACAAACAGAAAGGTCAAATGGTAGATTTTCAG AAGACAAAGTCATTATTGAATGTCTCAGTTGCTAATAAGGCGGTATTAAGAAGATGGAGT TCAGGGGTGTGTGGAAGTGCTAATCCAGTAGATGTTGCTTCTGGTGATCCAACTTCCCTG GCAGCAAATAAATTGGAAGATCAAGAATTTGAGAGCACTTTGGAAATGAAGCCAGAGTCT TACCCTACTCCTGAAATCTATGATGCTGAGGCTGTTGACAATGATTCCAAATCAAACTTA CCTGAAGAAAGAGCATCTAGTCCAGAGGAAATGAGAAAGGAGTGTCTCCCTAACCAAGGT GAAGAAACAGATCAGAAATTAAATGCCTCAGTCGAATGGACTCGAAAAAAGGAAGCAGAA CTAAACCAATTGCTGGTGAGGATGATGGAAACCAAACCTACAAAATATCAGAACTTGGCA CCTGGTGATAGCAAACTCCAACGTCTTCCCAATGAGCGTAGAGGTGGCTTCTATGGTCAT TACAAAGAAAAGAGGGATGAGAAACTTCGTGATGGAACTACCAGGAAGCAAGCAGAGAAG GGAAAACAATTTAAAGCACTGCAACAAATTCTTGATGAGAGAAAAGCTGAGATGGTCTCA AAAAAAGCGAGTAACGATAGTAAAAAATCAAATATAAAGAGAACACAGAAAGCAGTGAAG AACTTACCTGAATCTTCCAATCCCAGAAGTGGAACTCCTAATCCTGCTGTTGTAAAGAAA GTTCCACTGAAAACATCACCATTGCCAGCTACCCGCAAATCATGGCCATCTGCACCTTCA CCAAGGGCTGCAGGGATATCCCCTGCTAAAACTCCAGGTACTACACCTACCCGCAGAATA TCCCAGCCAGCACCAACCACTCCACGGTCAAGCGAAAAGGTTGAGAAATTACAACCAAAG ACAGTGAGAGCAACTGAGAATGGTACCAAAAGAACTGTTAAAGGTGTAAGTGAAAAGAAG TTAGAAACTGTGACAAAAACTAGCAAACCTAGAAGATCCAAAGTTCAGCCTGCATCTGAA GATTCTGCTTTCTCAGCGAAATCTAAGCTCAGCAAGGTAACAAAGAGAAGTAGTGTGATG CCTCTGGAATCAAAGGAGACAAAGCCTTTTCTTCGTAAGGGCTCACGCACTGGATCTGCT CCTAGCTCTGGTCTTGGTCCAGTTGTAAAGGTTAAAGTTGCATCTCAGCCTGTAGAGAGT GTGATGGATTCTGTTGATTCGGTTAAAATGGAAGAGAAAGAGATAGGTTCTGTTTCTTTT GATCTTGTTAATCAGGTGCAGGACTGGGGTCTTGAAGGTTTAAAAGTCCACGAGGATAAA GATTGTGAAGCTCAGGCAGAGAGCCCCCAGATATGTGAAAATGCAGAAAAATTTGATAAG GTCACTTCAAATGACACTGATGATTTTGGAAGGATTGAAGATTCTACCCCAAAAGAAGAG GTCGAAGGAGAGCCAAACATCTCACCTAGTGCCTGGGTGGAAATAGAGGAGCTCGAGGCT AAGTCTTTTCCAAGTAATGGTGATTTATGTAATAATGATTCTTTGGGTGATGTTGCACCT GTAAGAGTCTCAAGTCCACGAGTTCGTCATTCTCTTTCTCAAATGCTGCTCGAAGACAAC GGTGAAGCTGATGTAATTGACTGGGGTAATGCTGAGAATCCACCAACCATGATCTATCAG AAAGGTGAACCTAAAGGTTTGAAGCGGCTTCTGAAGTTTGCTCGAAAAAGTAAGACTGAT GCAAGCTCAACTGGTTTTTCAAGCCCCTCTGTCTTTTCTGAGGGAGAGGATGATCCAGAG GATTCTAAAGTTCTTACTAGGAGAAGTTCTGACAATCTATTAAAGAAGGCTACACATCAT GCAAAGAATGCTGGGCAACAAAAATCGTCATCATCTGAAGTCTACGATCTATCTGCGCCA ACTAGTATAGGCAACATTGGTGCTAAGAAATTGCAAGAGGGACACATCTCAGCGTCAGCG ACTACAACAAAAGCAACACGATCGTTCTTCTCTCTTTCAGCATTCAAAGGAAGCAAACAA AATGATGCCAAGCTTCGATGA

Peptide Sequence

PEP ID	Solyc06g048470.3.1
PEP Infomation	COP1-interacting-like protein, putative (AHRD V3.3 *** A0A072V1D3_MEDTR)
Sequence	MVEQGVDADVLLEYVEFKIFPSQGRYETLMIYGDKAEAASSGLLKQLMLHSPKIKSLHSK GSDSCFKFKPLGNLSDAKWFTKSTLIRFLRIISSSDIIDVAKAMVNEISQLEDARKFHLS LYSKGPQDHTGSEETADVSYSNSTAPTVDHDGNPSSSDASKNELLRAMDLRLTALTEELA AVFDQAVGTNCSFGDITNIEKFSYYFGAIDLRNCLQKFVALRQENTNGDSLGKEPPLSKN DARNDRTGSVGSTSKTSKPPQSDTAVKYSASPAKAAQLERQSSSASEESTLTSEEEQPSE ERSRTLIRSASPRRSASPMRRVQIGRSGSRRSTALTIKSLNFFPARERSVSHRDESASDC DEQAHELTSKKSEKNLQRMSVQDAIHLFENKQKGQMVDFQKTKSLLNVSVANKAVLRRWS SGVCGSANPVDVASGDPTSLAANKLEDQEFESTLEMKPESYPTPEIYDAEAVDNDSKSNL PEERASSPEEMRKECLPNQGEETDQKLNASVEWTRKKEAELNQLLVRMMETKPTKYQNLA PGDSKLQRLPNERRGGFYGHYKEKRDEKLRDGTTRKQAEKGKQFKALQQILDERKAEMVS KKASNDSKKSNIKRTQKAVKNLPESSNPRSGTPNPAVVKKVPLKTSPLPATRKSWPSAPS PRAAGISPAKTPGTTPTRRISQPAPTTPRSSEKVEKLQPKTVRATENGTKRTVKGVSEKK LETVTKTSKPRRSKVQPASEDSAFSAKSKLSKVTKRSSVMPLESKETKPFLRKGSRTGSA PSSGLGPVVKVKVASQPVESVMDSVDSVKMEEKEIGSVSFDLVNQVQDWGLEGLKVHEDK DCEAQAESPQICENAEKFDKVTSNDTDDFGRIEDSTPKEEVEGEPNISPSAWVEIEELEA KSFPSNGDLCNNDSLGDVAPVRVSSPRVRHSLSQMLLEDNGEADVIDWGNAENPPTMIYQ KGEPKGLKRLLKFARKSKTDASSTGFSSPSVFSEGEDDPEDSKVLTRRSSDNLLKKATHH AKNAGQQKSSSSEVYDLSAPTSIGNIGAKKLQEGHISASATTTKATRSFFSLSAFKGSKQ NDAKLR*

Transcript Sequence

Transcript ID	Solyc06g048470.3.1
Transcript Infomation	COP1-interacting-like protein, putative (AHRD V3.3 *** A0A072V1D3_MEDTR)
Sequence	AAAAAGAGTAGAGAAACATTACATGATTAGGCAATTATAAATACATCTAACATATTAATC AAAAGATTGTCCCCACTTGCACTGTCTACTTGGCTTTCTTTGTCTTTCATTCTGCTAATT AGGCAGCCTTTTTCCAAACGCAATCTCACAAAATACAGTGAAATTAATTTGGTGAAATTT GAATTTTGAAGTTTTCAAAAAATGAAATCTTGATTATAAATTAATTAATCATAATTATAT CATAATAACACCCATTTTTATGACAATGATATACGTTTTGATTCTCTAAAATGCACATAT TTTATTCTTCAAATATATATATATCTTCAACACACACTGTTTCTCAGCTTTGCCTTTAAT TTTTTCTTTTATCTTCTCTCACACACTCAAAGTTGTGTGCTTTTTTAGCTTTTAGCTTTA CACTCCACTGTGTTTGTCCACAATTTTAAAAAAAAAAAGGAAAAAGAGTGTCAGTTTTAC ATTTTAGCTTCAAATCCCACTTCAATCTTCATTATCTGTAAGTTATTCCACCTGCATTTT ACACTTTTTAACAAACCCAGAAAGAGTATTACAAGTTGATGCATATAGATTTTTTTTTTT TTTTTGCTTTTGAAATTTGAGTTGTTGTAAGGGTGTGCATTGACTTGATGGAACATGGGG TTTGCTTGTCGGTGGTACTTTTTGCCCCAAGATTGAATCTTTTTAAATTTAGATCTAATT TTTCAATGTTGGTTGGTGGGGTCTTCATTGTTTTAGCTCAATTCTTGGTTTACTCACCTT TCACACTTAAGATTTAAGTTGTGTCAAGTTGTTGGTGCCATAGAAATATTTTAGGTAATC TTGCTTGGGTTTTAGTTCCCCTAAAGCTATAATATGTAAAATTTTGATCAGGTTGAGTGT TTTTGAGAGATCAAGATGGTGGAGCAGGGTGTGGATGCTGATGTCTTGCTGGAGTATGTT GAATTTAAGATTTTTCCGAGTCAGGGGAGGTATGAGACACTTATGATCTATGGAGACAAG GCAGAGGCAGCATCCTCGGGGCTTCTGAAGCAGTTAATGCTACATTCTCCCAAAATTAAA TCATTGCACTCCAAAGGCTCAGATTCCTGCTTCAAATTTAAGCCTCTGGGTAATCTTAGT GATGCCAAATGGTTTACGAAATCCACGTTAATCAGGTTTCTTCGTATTATAAGTTCATCA GATATAATTGATGTGGCCAAGGCAATGGTAAATGAAATATCACAGCTTGAAGATGCTCGA AAGTTCCATCTTTCTTTGTACTCCAAGGGTCCTCAAGATCATACTGGGAGTGAGGAAACA GCAGATGTCAGCTACTCAAATTCTACAGCACCAACAGTTGATCACGATGGTAACCCTTCT TCATCAGATGCTTCCAAGAATGAATTATTGCGAGCAATGGACTTGAGGCTCACTGCATTA ACAGAAGAATTAGCTGCTGTTTTTGACCAAGCTGTTGGCACCAACTGCTCTTTTGGGGAT ATCACTAACATAGAGAAGTTCTCTTATTATTTTGGAGCTATTGACTTAAGGAACTGTCTG CAGAAGTTTGTTGCATTGAGGCAGGAGAACACAAATGGTGATTCTCTTGGTAAAGAGCCA CCTCTCTCTAAAAATGATGCCAGGAATGACAGAACTGGTTCAGTAGGGAGTACTTCTAAG ACATCCAAACCGCCACAATCAGATACAGCTGTGAAATATAGTGCCTCGCCTGCGAAAGCT GCACAGCTCGAGAGGCAAAGCTCATCAGCAAGTGAGGAATCAACTTTGACAAGTGAGGAG GAACAGCCATCGGAGGAAAGGAGTCGGACACTTATAAGATCCGCATCACCAAGGAGGTCT GCATCTCCAATGCGAAGAGTCCAAATTGGACGCTCTGGCTCACGACGATCCACTGCTTTA ACAATAAAGAGTCTGAACTTCTTTCCTGCCAGGGAAAGGTCAGTCTCTCATAGAGATGAA TCTGCAAGTGATTGTGATGAGCAAGCACATGAGCTAACCTCAAAAAAATCTGAGAAAAAT TTACAAAGAATGAGTGTGCAAGATGCAATTCATCTTTTTGAAAACAAACAGAAAGGTCAA ATGGTAGATTTTCAGAAGACAAAGTCATTATTGAATGTCTCAGTTGCTAATAAGGCGGTA TTAAGAAGATGGAGTTCAGGGGTGTGTGGAAGTGCTAATCCAGTAGATGTTGCTTCTGGT GATCCAACTTCCCTGGCAGCAAATAAATTGGAAGATCAAGAATTTGAGAGCACTTTGGAA ATGAAGCCAGAGTCTTACCCTACTCCTGAAATCTATGATGCTGAGGCTGTTGACAATGAT TCCAAATCAAACTTACCTGAAGAAAGAGCATCTAGTCCAGAGGAAATGAGAAAGGAGTGT CTCCCTAACCAAGGTGAAGAAACAGATCAGAAATTAAATGCCTCAGTCGAATGGACTCGA AAAAAGGAAGCAGAACTAAACCAATTGCTGGTGAGGATGATGGAAACCAAACCTACAAAA TATCAGAACTTGGCACCTGGTGATAGCAAACTCCAACGTCTTCCCAATGAGCGTAGAGGT GGCTTCTATGGTCATTACAAAGAAAAGAGGGATGAGAAACTTCGTGATGGAACTACCAGG AAGCAAGCAGAGAAGGGAAAACAATTTAAAGCACTGCAACAAATTCTTGATGAGAGAAAA GCTGAGATGGTCTCAAAAAAAGCGAGTAACGATAGTAAAAAATCAAATATAAAGAGAACA CAGAAAGCAGTGAAGAACTTACCTGAATCTTCCAATCCCAGAAGTGGAACTCCTAATCCT GCTGTTGTAAAGAAAGTTCCACTGAAAACATCACCATTGCCAGCTACCCGCAAATCATGG CCATCTGCACCTTCACCAAGGGCTGCAGGGATATCCCCTGCTAAAACTCCAGGTACTACA CCTACCCGCAGAATATCCCAGCCAGCACCAACCACTCCACGGTCAAGCGAAAAGGTTGAG AAATTACAACCAAAGACAGTGAGAGCAACTGAGAATGGTACCAAAAGAACTGTTAAAGGT GTAAGTGAAAAGAAGTTAGAAACTGTGACAAAAACTAGCAAACCTAGAAGATCCAAAGTT CAGCCTGCATCTGAAGATTCTGCTTTCTCAGCGAAATCTAAGCTCAGCAAGGTAACAAAG AGAAGTAGTGTGATGCCTCTGGAATCAAAGGAGACAAAGCCTTTTCTTCGTAAGGGCTCA CGCACTGGATCTGCTCCTAGCTCTGGTCTTGGTCCAGTTGTAAAGGTTAAAGTTGCATCT CAGCCTGTAGAGAGTGTGATGGATTCTGTTGATTCGGTTAAAATGGAAGAGAAAGAGATA GGTTCTGTTTCTTTTGATCTTGTTAATCAGGTGCAGGACTGGGGTCTTGAAGGTTTAAAA GTCCACGAGGATAAAGATTGTGAAGCTCAGGCAGAGAGCCCCCAGATATGTGAAAATGCA GAAAAATTTGATAAGGTCACTTCAAATGACACTGATGATTTTGGAAGGATTGAAGATTCT ACCCCAAAAGAAGAGGTCGAAGGAGAGCCAAACATCTCACCTAGTGCCTGGGTGGAAATA GAGGAGCTCGAGGCTAAGTCTTTTCCAAGTAATGGTGATTTATGTAATAATGATTCTTTG GGTGATGTTGCACCTGTAAGAGTCTCAAGTCCACGAGTTCGTCATTCTCTTTCTCAAATG CTGCTCGAAGACAACGGTGAAGCTGATGTAATTGACTGGGGTAATGCTGAGAATCCACCA ACCATGATCTATCAGAAAGGTGAACCTAAAGGTTTGAAGCGGCTTCTGAAGTTTGCTCGA AAAAGTAAGACTGATGCAAGCTCAACTGGTTTTTCAAGCCCCTCTGTCTTTTCTGAGGGA GAGGATGATCCAGAGGATTCTAAAGTTCTTACTAGGAGAAGTTCTGACAATCTATTAAAG AAGGCTACACATCATGCAAAGAATGCTGGGCAACAAAAATCGTCATCATCTGAAGTCTAC GATCTATCTGCGCCAACTAGTATAGGCAACATTGGTGCTAAGAAATTGCAAGAGGGACAC ATCTCAGCGTCAGCGACTACAACAAAAGCAACACGATCGTTCTTCTCTCTTTCAGCATTC AAAGGAAGCAAACAAAATGATGCCAAGCTTCGATGAGAAACCTGCCTTAGTATTGGGGGA TAAAATGTTGTAGCTTGTAATGTTTCTGTCTCTTTTTAAAAGAGAAGATATCATAACAGA AGAGCGGCCAGAGCAGCAGATTTCATAGGCCGCGGTTCTTCTTTAGAGATATCACCAAGT GAATAATTTGTTCCTATTAGTAAAGAAAACAATTTTTTCCCCTTCCTATAAAGCATAATA TTACCATTTAGCACTTGATCTCATTCTTATGTGTGGAAAAAAATGAAAACAGGAATGTTC AAGTTCAAATAAAAGAGGAATATTCCAACTTTAAATGAAAATAATAATCCAAACTAACAT CTCAAAATATATCCTCCCGCCATTGAGAATTTTGTTGGCATTATAATACAATTTTGTTTG TGTTGGTAGAAACGTAAAAGAGAAAACATAAGATTTAATGTGGTTTGGATCCTATGTCTA TAAAAGAACATATGCCTGTAAACTATAAACGATGTACCTTATAGACGAAACATAGTAGCA GAGTAGATCAAAGAGGACTGAGAAGAGGTTGTTTTATTAGTTGTTGAATCTTGAAAAAAG TAACAATCTCACCATTAAAACAATTTCGAAGGATATTTCTTATAACAATAATAATAATAA TACTAATAGAGTGAATTTACTATAACAGTTTCGTCAAAGACTAGCATCCAAACAAGGTGG CTTTTGAGAATTTCATCCACAAACTTAAGTTGAGTGCCATAAATTTATCATTGATCAGTA GCGTCTACATCTTCATTCAGTTCATCCGAGTGCCTCCAGCCATCTCCATCTTGATCATCA ACAAGATCAATAAATCTTGATTTTGATTAAGAACAGGATTTACGCATTAATGAGAAAATT GACTTGAAGAACAGATACTACTGATATATATAGTAATATAGTAATAATTTTTCTTTTACC CATTAGTTTAGGATTCTCTTTCCTTGTTTTTTTTTTTTGGTTTTGTCCTCCAAGATTATT TTTCTTTAAATTTATCACACTAGTCATTTGGACGTTTTATTTTGCATTCTCACACATATG CACACACTTAACATTGTTTAGGATACCAAATATGTTTTCTTTTTTTCCCTCATCTATTTT TCTCCTAATAATAATACATATATTATTCGACTTTCTTTACTTTACTTTACTACTATTATA GAAAAGCTTAGTTTTAACATGTCT