Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g036340.3.1
CDS Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT3G49140.1)
Sequence

ATGTTAACGGTAAAACACACCGCTGCCGCCCTCCGATTCTCCGCCGTTAACTTCGATAAC
ACTTCCCGCCGGTTATCTCATTCTCCCAGCTTCTTCATCCCTCCTCGAGATAAATTTGGA
AGATTGACGGATAATTATGCTGGAAGAAAAACGTGCAAGGGAAAATTTGGAATTAAAGCA
ACTGCAAAGGATCATTTCAGTTCGGGTTCTGAGCCAGTAAAACAGAATGCGACGCAGTCG
AGCTATCATCCATCTGAGGACATTGGGGAGCCGGAACTAATGGAGAATGAGGAAGCTCAA
CTCAAGCCAGCTGAATGTACAAGGACAATTATTGAGGTAAATAGCAAAGCAACACTCATG
TTTTCAAGTGCAATCAGCGACGTAATGCGTGCAAATATTTTCTGGCCAGATTTGCCTTAC
ACAACTGATGAACTTGGAAATGTCTACTTTCAAGTGAAGAATGACGAAGACGTTCTGAAA
AATCCAACAACTGAAGAAAACGTTGTGGAAGTAATTATTGGCCTAGATACATCCGAAATG
CAGAGTGAGATGGAGTCATCAGGTCAATCCGAACTTGGTTACCATATAGATGAATTTGAT
GATGAGAATATCGATATTGATGATGAAGACGACATTGACGATGACGATGACGATGATGAT
GACGACGACGACGACGATGATGAAGCGGATTGGGTTTCTGTTCTTGATGATGAAGAAGAT
CAGAGTGGGGATCCTGACTTGGAGGATTGGGCTACATTAGAGACGATGCGATCTTCTCAT
CCGATACACTTTGCCCAACAAATTAGTGAGGTTGTGACAGATGATCCTATAGATTTTATG
GATCAGCCTCCAGCAGGTCTTATTATTCATGGCCTTCTAAGGCCAGCTTTCCTTGAAGAT
CACATCACCATTCCAAAGCAGATAGCTGAACATGAATCAAATGATGCTGGTATAAAACAA
ATGGAACAAGTGGCAGAACATAAGCAAAATGGTAGTGTTCAAGTCAATGGCCACAAACAT
GAAACTGAATCTTCGCAAGATAACCCAAGTTGTCCAGAGGAATTGGAGAAGGATGAAACC
CTTGGAAATGGAACTTCATTTTACAAGCTAGAGATGATTAAAATTCAGTTAATTTCTTCA
CATGGACAGCAAATCTTAGTTGAGTTAGAAGATTTTAGTCAAGCTAGGCCTGATGCAATA
GCGCATTCGGCTGCCAATATTATATCACGGCTTAAAGCTGTAGGAGAAAAAACCACGCAG
GCTCTCAGATCTCTCTGTTGGAGATGCAAGGGAATTCAAGTGGAGGAAGTGGTTCTGATA
GGTGTAGACAGCCTTGGTTTTGACGTAAGAGTTTGCTCTGGAGCACAAATTCAGACAGTG
CGGTTTTCCTTTAAAAAGCGGGCAACCTCGGAGTACAGTGCGGAAAGACAATTAAACGAT
CTGCTGTATCCAAGGGTCCACCCTAAGTTACATCAAAAGAAAGAAACTCACCAAACTGAA
TCATGA

Peptide Sequence

PEP ID

Solyc06g036340.3.1
PEP Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT3G49140.1)
Sequence

MLTVKHTAAALRFSAVNFDNTSRRLSHSPSFFIPPRDKFGRLTDNYAGRKTCKGKFGIKA
TAKDHFSSGSEPVKQNATQSSYHPSEDIGEPELMENEEAQLKPAECTRTIIEVNSKATLM
FSSAISDVMRANIFWPDLPYTTDELGNVYFQVKNDEDVLKNPTTEENVVEVIIGLDTSEM
QSEMESSGQSELGYHIDEFDDENIDIDDEDDIDDDDDDDDDDDDDDDEADWVSVLDDEED
QSGDPDLEDWATLETMRSSHPIHFAQQISEVVTDDPIDFMDQPPAGLIIHGLLRPAFLED
HITIPKQIAEHESNDAGIKQMEQVAEHKQNGSVQVNGHKHETESSQDNPSCPEELEKDET
LGNGTSFYKLEMIKIQLISSHGQQILVELEDFSQARPDAIAHSAANIISRLKAVGEKTTQ
ALRSLCWRCKGIQVEEVVLIGVDSLGFDVRVCSGAQIQTVRFSFKKRATSEYSAERQLND
LLYPRVHPKLHQKKETHQTES*

Transcript Sequence

Transcript ID

Solyc06g036340.3.1
Transcript Infomation

Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT3G49140.1)
Sequence

ACAAGGCATCATAAATAAAAGAAGAAAGAAAAAGGTGGATAGTTAGATAAAAGAGAGAGA
ACCACACGGCCGAATCATCACATAGATAGCTGAGTTTATACTTAACTCTAGCACTTCTCT
ACCTTTGATTTCGTTTCAGTTCGGAAAATGTTAACGGTAAAACACACCGCTGCCGCCCTC
CGATTCTCCGCCGTTAACTTCGATAACACTTCCCGCCGGTTATCTCATTCTCCCAGCTTC
TTCATCCCTCCTCGAGATAAATTTGGAAGATTGACGGATAATTATGCTGGAAGAAAAACG
TGCAAGGGAAAATTTGGAATTAAAGCAACTGCAAAGGATCATTTCAGTTCGGGTTCTGAG
CCAGTAAAACAGAATGCGACGCAGTCGAGCTATCATCCATCTGAGGACATTGGGGAGCCG
GAACTAATGGAGAATGAGGAAGCTCAACTCAAGCCAGCTGAATGTACAAGGACAATTATT
GAGGTAAATAGCAAAGCAACACTCATGTTTTCAAGTGCAATCAGCGACGTAATGCGTGCA
AATATTTTCTGGCCAGATTTGCCTTACACAACTGATGAACTTGGAAATGTCTACTTTCAA
GTGAAGAATGACGAAGACGTTCTGAAAAATCCAACAACTGAAGAAAACGTTGTGGAAGTA
ATTATTGGCCTAGATACATCCGAAATGCAGAGTGAGATGGAGTCATCAGGTCAATCCGAA
CTTGGTTACCATATAGATGAATTTGATGATGAGAATATCGATATTGATGATGAAGACGAC
ATTGACGATGACGATGACGATGATGATGACGACGACGACGACGATGATGAAGCGGATTGG
GTTTCTGTTCTTGATGATGAAGAAGATCAGAGTGGGGATCCTGACTTGGAGGATTGGGCT
ACATTAGAGACGATGCGATCTTCTCATCCGATACACTTTGCCCAACAAATTAGTGAGGTT
GTGACAGATGATCCTATAGATTTTATGGATCAGCCTCCAGCAGGTCTTATTATTCATGGC
CTTCTAAGGCCAGCTTTCCTTGAAGATCACATCACCATTCCAAAGCAGATAGCTGAACAT
GAATCAAATGATGCTGGTATAAAACAAATGGAACAAGTGGCAGAACATAAGCAAAATGGT
AGTGTTCAAGTCAATGGCCACAAACATGAAACTGAATCTTCGCAAGATAACCCAAGTTGT
CCAGAGGAATTGGAGAAGGATGAAACCCTTGGAAATGGAACTTCATTTTACAAGCTAGAG
ATGATTAAAATTCAGTTAATTTCTTCACATGGACAGCAAATCTTAGTTGAGTTAGAAGAT
TTTAGTCAAGCTAGGCCTGATGCAATAGCGCATTCGGCTGCCAATATTATATCACGGCTT
AAAGCTGTAGGAGAAAAAACCACGCAGGCTCTCAGATCTCTCTGTTGGAGATGCAAGGGA
ATTCAAGTGGAGGAAGTGGTTCTGATAGGTGTAGACAGCCTTGGTTTTGACGTAAGAGTT
TGCTCTGGAGCACAAATTCAGACAGTGCGGTTTTCCTTTAAAAAGCGGGCAACCTCGGAG
TACAGTGCGGAAAGACAATTAAACGATCTGCTGTATCCAAGGGTCCACCCTAAGTTACAT
CAAAAGAAAGAAACTCACCAAACTGAATCATGAAAAAAAAATCTGTAGATTTTGTTATAC
TTCTGGCTCAAAATTGTATATAGACAGAATACATACTCTTTGATTCATCCCATTAGAATT
ATTTCTTCAGTAGAGTTCTTGAATACTCGGTTCTCCCTTTACTACTGTTGTAACTTGTAA
TCTCAATTTGTTCTACTCAAGTTCAATTCAAATGCAATTTTGGCTAAATACATTTTTTAA
AACATTCTTTATT