Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g009190.3.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4C3U9_SOLLC)
Sequence

ATGTATATCCAAAAAGAGAAACCTTCACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTC
ACATTCTTCTTTCCCCCAAAATCATTATTAGTATCAAGTACTCAACAAATTCATGTTCAC
AAAAACATCCAAATTGCAAATTCACATTGCCAAGACACACTTTACCCTAAGCTTTGCATT
TCCACTCTTTCATTAATCCCAAATCTTCATAAAAAATCAATTCCAGAAATCATATCTTCC
AATGTCAATGTCACAATGAATGAAGTCAAATCCTCTGCTGAAAATTGCTCTAACATACTT
CACCATATGTCCAAATTGGACCCTATTGAGAAAAGGGCATTAGATGATTGTATTGAACTT
TTAGGTGATACAACTATTGATGAGTTACAAACAACTCTTAATGATCTTTCTACTAAAAAT
AGTAGTAATTCACCTTTAAAGCACTATAATGATCTACAAACACTTCTTAGTGGTGCAATG
ACAAATCAAGATACTTGTCTTGAAGGAATTCACAAAAGTAAACACAAATTGAGTCAATAC
ATTGAGAAGAACTTGCATACAATATCTCATCATGTGAGCAACTCTCTTGCCATGCTTAAG
AAGTTAAAGACAGGGTCGTCTCAAGGGTCGTCATCAAACTCTAATGAAGTCTTCCCCGAG
TACGGCACCATGAAGAATGGGTACCCAAAATGGTTGCAAAAAAAGGACCGGACCCTTTTA
CAAGCTCCGTTGAACCAAATTAAGTTCAATTTGGTTGTGGCTAAAGATGGTAGTGGTAAT
TTTACTACTATTAATGCAGCGTTAAGTGCTGCACCAAATTCTTCTAGTACAAGATTTGTG
ATTTACATCAAGGCGGGAACGTATTTCGAATATATTGACGTAGAAAGAAAGAAAAGTATG
ATAATGTTCATCGGAGATGGGATCGGAAAAACAGTAATAAAGGGTAATCGGAACGTCGTA
GATGGATGGACTACTTTCCGATCAGCTACCGTTGCTGTGGTGGGAAATGGATTCTTAGCT
AGAGGCATTACGTTTGAGAACTATGCCGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGG
AGCGGCTCCGACCTATCGGCGTTCTACCAATGTAGCTTTATTGCCTATCAAGACACCCTC
TACGTCCACTCACTTCGACAATTCTATCGCGATTGCGATGTCTATGGGACGGTTGACTTC
ATTTTTGGTAATGCAGCTGTTGTTCTCCAGAATTGTAACTTGTATGCTCGTAAACCTAAC
CCGAATCAGAAGAACATGTTCACGGCACAAGGAAGAGAAGATCCAAATCAAAACACTGGA
ATTTCAATCTTGAATTGTAAAGTGGAAGCTGCATCGGATTTAGTTCCTGTTGTATCGTCA
TTCAAAAATTACTTAGGACGACCATGGAAACAATATTCAAGAACTGTAATTCTCATATCC
AATATTGGAAGCTTAATTGATCCTGCTGGTTGGTTAGAATGGAGTGGTGATTTTGCATTG
AACACACTTTATTATGGAGAGTATTTGAACCGGGGACCCGGTTCAAATACTAGTGCTAGA
GTAAAATGGCCCGGTTATCGGGTCATTAATAGCTCTAGTGAGGCCAGTCAATTCACTGTT
GGAAATTTTATTCAAGGGAGTGAGTGGATACCTGCTACCGGGGTGCCATTTTATTCTGGT
TTGACTTCCTCTTGA

Peptide Sequence

PEP ID

Solyc06g009190.3.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4C3U9_SOLLC)
Sequence

MYIQKEKPSLSLALSFIFLLTFFFPPKSLLVSSTQQIHVHKNIQIANSHCQDTLYPKLCI
STLSLIPNLHKKSIPEIISSNVNVTMNEVKSSAENCSNILHHMSKLDPIEKRALDDCIEL
LGDTTIDELQTTLNDLSTKNSSNSPLKHYNDLQTLLSGAMTNQDTCLEGIHKSKHKLSQY
IEKNLHTISHHVSNSLAMLKKLKTGSSQGSSSNSNEVFPEYGTMKNGYPKWLQKKDRTLL
QAPLNQIKFNLVVAKDGSGNFTTINAALSAAPNSSSTRFVIYIKAGTYFEYIDVERKKSM
IMFIGDGIGKTVIKGNRNVVDGWTTFRSATVAVVGNGFLARGITFENYAGPSKHQAVALR
SGSDLSAFYQCSFIAYQDTLYVHSLRQFYRDCDVYGTVDFIFGNAAVVLQNCNLYARKPN
PNQKNMFTAQGREDPNQNTGISILNCKVEAASDLVPVVSSFKNYLGRPWKQYSRTVILIS
NIGSLIDPAGWLEWSGDFALNTLYYGEYLNRGPGSNTSARVKWPGYRVINSSSEASQFTV
GNFIQGSEWIPATGVPFYSGLTSS*

Transcript Sequence

Transcript ID

Solyc06g009190.3.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4C3U9_SOLLC)
Sequence

CTTTACTACTCATTTCCACCACAAAGTTCCCAAAATGTATATCCAAAAAGAGAAACCTTC
ACTTTCTCTTGCTCTTTCATTCATTTTCTTGCTCACATTCTTCTTTCCCCCAAAATCATT
ATTAGTATCAAGTACTCAACAAATTCATGTTCACAAAAACATCCAAATTGCAAATTCACA
TTGCCAAGACACACTTTACCCTAAGCTTTGCATTTCCACTCTTTCATTAATCCCAAATCT
TCATAAAAAATCAATTCCAGAAATCATATCTTCCAATGTCAATGTCACAATGAATGAAGT
CAAATCCTCTGCTGAAAATTGCTCTAACATACTTCACCATATGTCCAAATTGGACCCTAT
TGAGAAAAGGGCATTAGATGATTGTATTGAACTTTTAGGTGATACAACTATTGATGAGTT
ACAAACAACTCTTAATGATCTTTCTACTAAAAATAGTAGTAATTCACCTTTAAAGCACTA
TAATGATCTACAAACACTTCTTAGTGGTGCAATGACAAATCAAGATACTTGTCTTGAAGG
AATTCACAAAAGTAAACACAAATTGAGTCAATACATTGAGAAGAACTTGCATACAATATC
TCATCATGTGAGCAACTCTCTTGCCATGCTTAAGAAGTTAAAGACAGGGTCGTCTCAAGG
GTCGTCATCAAACTCTAATGAAGTCTTCCCCGAGTACGGCACCATGAAGAATGGGTACCC
AAAATGGTTGCAAAAAAAGGACCGGACCCTTTTACAAGCTCCGTTGAACCAAATTAAGTT
CAATTTGGTTGTGGCTAAAGATGGTAGTGGTAATTTTACTACTATTAATGCAGCGTTAAG
TGCTGCACCAAATTCTTCTAGTACAAGATTTGTGATTTACATCAAGGCGGGAACGTATTT
CGAATATATTGACGTAGAAAGAAAGAAAAGTATGATAATGTTCATCGGAGATGGGATCGG
AAAAACAGTAATAAAGGGTAATCGGAACGTCGTAGATGGATGGACTACTTTCCGATCAGC
TACCGTTGCTGTGGTGGGAAATGGATTCTTAGCTAGAGGCATTACGTTTGAGAACTATGC
CGGACCAAGCAAGCACCAAGCGGTGGCGCTGCGGAGCGGCTCCGACCTATCGGCGTTCTA
CCAATGTAGCTTTATTGCCTATCAAGACACCCTCTACGTCCACTCACTTCGACAATTCTA
TCGCGATTGCGATGTCTATGGGACGGTTGACTTCATTTTTGGTAATGCAGCTGTTGTTCT
CCAGAATTGTAACTTGTATGCTCGTAAACCTAACCCGAATCAGAAGAACATGTTCACGGC
ACAAGGAAGAGAAGATCCAAATCAAAACACTGGAATTTCAATCTTGAATTGTAAAGTGGA
AGCTGCATCGGATTTAGTTCCTGTTGTATCGTCATTCAAAAATTACTTAGGACGACCATG
GAAACAATATTCAAGAACTGTAATTCTCATATCCAATATTGGAAGCTTAATTGATCCTGC
TGGTTGGTTAGAATGGAGTGGTGATTTTGCATTGAACACACTTTATTATGGAGAGTATTT
GAACCGGGGACCCGGTTCAAATACTAGTGCTAGAGTAAAATGGCCCGGTTATCGGGTCAT
TAATAGCTCTAGTGAGGCCAGTCAATTCACTGTTGGAAATTTTATTCAAGGGAGTGAGTG
GATACCTGCTACCGGGGTGCCATTTTATTCTGGTTTGACTTCCTCTTGAATACATTATTT
TAAATCAGCGACCGCTGAGGGTTTATCTTATAGGGTATTTATTAATATAATTTTTATCAA
AAATATCAACAACTTATGGGGTATTTATTAATATATATACCTTGGAGATAACAACCACAA
TAGTTACTAGTCTGGTTCATTGCTTGCATATGTTCATGTGTTAAGATTTTTCTTAGCATA
TGTTGTTTTAGCTTGTTTTCCTATTGAGAATATATATATATATATATATATATATATTAT
AATATTTCTTTTTGTGAGAAATTTGATGTCAGAGCTTCATTTCTTGAGGAATTGTTAATG
TCAATGAATGTAGTGCCAATATAAGTTTGATCTTTATCATGAATAAATTTTGAATGTATT
TATTTATATAACTATATTCCCTCTGTC