Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g008970.3.1
CDS Infomation

RNA helicase DEAH-box18
Sequence

ATGAAATTCCAATTAGAAGATGTAACAATCTATTTTCCATATGATAACATATATCCAGAA
CAGTATCAATACATGTTAGAACTCAAAAGAGCTTTAGATGCAAAAGGGCATTGTCTTCTT
GAAATGCCTACAGGAACTGGTAAAACAATTGCTTTACTTTCTTTAATTACAAGTTACAGA
CTTTCAAAACCATCAAATCCAATTAAGCTTCTTTATTGTACAAGAACTGTACATGAAATG
GAGAAAACATTAGCTGAGCTTAAATTGTTGTATAATTATCAGTTACAGCATTTCGGGCCG
GGGGCTCGAATGCTGGCAATTGGGTTGTCATCAAGAAAGAATTTGTGTGTGAACCCATCT
GTGGTTTCTGCTGAGAATAGGGATTCTGTTGATGCTGGTTGTAGGAAACTTACTGCTAGT
TGGGTTAGAGCAATTGCTGTTGAAAATCCAAATATTCCTACTTGTTCCTATTATGAGAAT
TATGATACTGCTGATAAGGCTGGTACTTCCACTTTGCCTGCTGGAGTTTATACTTTGCAG
GAGCTAAGATTGTTTGGTAAGGAGAAAGGCTGGTGCCCGTACTTTCTGGCGAGGCATATG
GTGCAGCAGGCAAATGTTGTGGTTTACAGCTACCAATACCTTCTTGATCCCAAGGTTGCT
GGTATCATATCAAAGGAGATGGAGAGAGAGTGTGTCGTAGTGTTTGATGAGGCCCATAAT
ATAGACAATGTATGTATTGAGGCACTTAGTGTCAGTGTGAGGAAGCAAACACTTGAAGGG
GCAACAAGGAATCTCAGTAGGATGTCTAATGAAATTGAAAGGCTGAAGGCTACTGATGCT
GGTCGATTGCGGGTTGAGTATAATCGTCTAGTTGAGGGTCTAGCTCAAAGACTGCCCGCT
CAGGATGTATGGCTTGCTAATCCCGCCTTGCCTGATGACATCATGAAGGAGGCAGTGCCA
GGAAATATAAGGAAAGCAGAGCATTTCTTGTCTGTTTTGCGAAGATTTGTCCAGTATCTT
AATGGGCGTCTGGAGACTGATAATGTAGAAAAAGAAGGCCCTGTTGCCTTTGTTGCTTCT
ATTAATACACAAGTTGGAATTGATCAAAAGATGTTAAAATTTTGTTATGATAGGCTTCAC
TCCCTTATGTTAACCCTGGAGATTACTGATACAGATGAGTTTCTGCATATACAAACTGTT
TGTGACCTTGCCACGTTGGTAGGGACGTACGCTCGGGGCTTTTCCATTATAATTGAACCA
TATGACGAGAGGATGCCACATATTCCTGATCCTGTCCTGCAGCTTACCTGTCACGATGCC
TCTCTTGCCATAAAGCCTGTTTTTGAACGATTCCAATCTGTTGTGATTACCTCGGGGACC
CTCAGTCCAATTGATCTCTATCCTCGTCTTCTCAATTTTAATCCGGTAGTAAGTCGAAGC
TTCAAGATGTCACTGACAAGGGATTGCATATGCCCAATGGTCCTTACCCGGGGAAGTGAT
CAGCTTCCTGTAAGCACTAAGTATGACCTGAGAAGCGATCCGGGCGTCGAGAAAAATTAT
GGGAAGCTTTTGCTAGAAATGGTTTCTGTTGTTCCAGATGGGGTTGTCTGTTTTTTTGTC
AGTTACTCTTATATGGATGGAATTGTCAACAGTTGGCATGAATCAGGAATATTAAAGGAT
ATAATGCAACATAAACTTGTATTTATCGAGACCCAAGATGTTGTAGAGACTACATTGGCT
TTGGATAATTATCGCAAGGCTTGTGATAGTGGGAGGGGTGCAGTTTTCTTCTCAGTTGCT
AGGGGAAAAGTGGCTGAAGGTATAGACTTTGATAGACACTATGGGAGGCTTGTTATCATG
TTTGGCGTTCCATTCCAATACACATTAAGCAGAATATTGCTTGCACGATTGGAATATCTG
AGGGAGACCTTCCAAATAAAAGAGGGCGATTTTCTGACTTTTGATGCTTTGAGGCAAGCT
GCTCAATGTGTGGGTCGAGTTATTCGTTCAAAGGCAGATTATGGCATGATGATTTTTGCT
GATAAAAGATATAGCCGTCATGATAAGCGCTCCAAGTTGCCTGGATGGATACTTTCACAT
TTACGTGATGCTCACCTGAACTTAAGTACAGACATGGCCGTGTATATAGCAAAAGAGTTT
TTGAGAAAAATGGCTCAACCATATGATAAGAACGGTGCTCTGGGCAAGAAAACTCTACTG
TCACAAGAAGACTTGGAGAATATGATCACCGGCCCTGATGGGGAAATGTTGCTTTAA

Peptide Sequence

PEP ID

Solyc06g008970.3.1
PEP Infomation

RNA helicase DEAH-box18
Sequence

MKFQLEDVTIYFPYDNIYPEQYQYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR
LSKPSNPIKLLYCTRTVHEMEKTLAELKLLYNYQLQHFGPGARMLAIGLSSRKNLCVNPS
VVSAENRDSVDAGCRKLTASWVRAIAVENPNIPTCSYYENYDTADKAGTSTLPAGVYTLQ
ELRLFGKEKGWCPYFLARHMVQQANVVVYSYQYLLDPKVAGIISKEMERECVVVFDEAHN
IDNVCIEALSVSVRKQTLEGATRNLSRMSNEIERLKATDAGRLRVEYNRLVEGLAQRLPA
QDVWLANPALPDDIMKEAVPGNIRKAEHFLSVLRRFVQYLNGRLETDNVEKEGPVAFVAS
INTQVGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHIQTVCDLATLVGTYARGFSIIIEP
YDERMPHIPDPVLQLTCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMVSVVPDGVVCFFV
SYSYMDGIVNSWHESGILKDIMQHKLVFIETQDVVETTLALDNYRKACDSGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAVYIAKEF
LRKMAQPYDKNGALGKKTLLSQEDLENMITGPDGEMLL*

Transcript Sequence

Transcript ID

Solyc06g008970.3.1
Transcript Infomation

RNA helicase DEAH-box18
Sequence

CCCTCACTCTTTGCCGCTTTACTGTTAAATCCTATACAACATTAGGGTCTAAAGAAGAAC
TTAGGTCTCAATTTTTCTTCAAAAAAAAACTCACCAAGATTCAATTTTTTCACTCAGAAA
ACAAGAAAATCAGCAAACCCCAGAAGATGAAATTCCAATTAGAAGATGTAACAATCTATT
TTCCATATGATAACATATATCCAGAACAGTATCAATACATGTTAGAACTCAAAAGAGCTT
TAGATGCAAAAGGGCATTGTCTTCTTGAAATGCCTACAGGAACTGGTAAAACAATTGCTT
TACTTTCTTTAATTACAAGTTACAGACTTTCAAAACCATCAAATCCAATTAAGCTTCTTT
ATTGTACAAGAACTGTACATGAAATGGAGAAAACATTAGCTGAGCTTAAATTGTTGTATA
ATTATCAGTTACAGCATTTCGGGCCGGGGGCTCGAATGCTGGCAATTGGGTTGTCATCAA
GAAAGAATTTGTGTGTGAACCCATCTGTGGTTTCTGCTGAGAATAGGGATTCTGTTGATG
CTGGTTGTAGGAAACTTACTGCTAGTTGGGTTAGAGCAATTGCTGTTGAAAATCCAAATA
TTCCTACTTGTTCCTATTATGAGAATTATGATACTGCTGATAAGGCTGGTACTTCCACTT
TGCCTGCTGGAGTTTATACTTTGCAGGAGCTAAGATTGTTTGGTAAGGAGAAAGGCTGGT
GCCCGTACTTTCTGGCGAGGCATATGGTGCAGCAGGCAAATGTTGTGGTTTACAGCTACC
AATACCTTCTTGATCCCAAGGTTGCTGGTATCATATCAAAGGAGATGGAGAGAGAGTGTG
TCGTAGTGTTTGATGAGGCCCATAATATAGACAATGTATGTATTGAGGCACTTAGTGTCA
GTGTGAGGAAGCAAACACTTGAAGGGGCAACAAGGAATCTCAGTAGGATGTCTAATGAAA
TTGAAAGGCTGAAGGCTACTGATGCTGGTCGATTGCGGGTTGAGTATAATCGTCTAGTTG
AGGGTCTAGCTCAAAGACTGCCCGCTCAGGATGTATGGCTTGCTAATCCCGCCTTGCCTG
ATGACATCATGAAGGAGGCAGTGCCAGGAAATATAAGGAAAGCAGAGCATTTCTTGTCTG
TTTTGCGAAGATTTGTCCAGTATCTTAATGGGCGTCTGGAGACTGATAATGTAGAAAAAG
AAGGCCCTGTTGCCTTTGTTGCTTCTATTAATACACAAGTTGGAATTGATCAAAAGATGT
TAAAATTTTGTTATGATAGGCTTCACTCCCTTATGTTAACCCTGGAGATTACTGATACAG
ATGAGTTTCTGCATATACAAACTGTTTGTGACCTTGCCACGTTGGTAGGGACGTACGCTC
GGGGCTTTTCCATTATAATTGAACCATATGACGAGAGGATGCCACATATTCCTGATCCTG
TCCTGCAGCTTACCTGTCACGATGCCTCTCTTGCCATAAAGCCTGTTTTTGAACGATTCC
AATCTGTTGTGATTACCTCGGGGACCCTCAGTCCAATTGATCTCTATCCTCGTCTTCTCA
ATTTTAATCCGGTAGTAAGTCGAAGCTTCAAGATGTCACTGACAAGGGATTGCATATGCC
CAATGGTCCTTACCCGGGGAAGTGATCAGCTTCCTGTAAGCACTAAGTATGACCTGAGAA
GCGATCCGGGCGTCGAGAAAAATTATGGGAAGCTTTTGCTAGAAATGGTTTCTGTTGTTC
CAGATGGGGTTGTCTGTTTTTTTGTCAGTTACTCTTATATGGATGGAATTGTCAACAGTT
GGCATGAATCAGGAATATTAAAGGATATAATGCAACATAAACTTGTATTTATCGAGACCC
AAGATGTTGTAGAGACTACATTGGCTTTGGATAATTATCGCAAGGCTTGTGATAGTGGGA
GGGGTGCAGTTTTCTTCTCAGTTGCTAGGGGAAAAGTGGCTGAAGGTATAGACTTTGATA
GACACTATGGGAGGCTTGTTATCATGTTTGGCGTTCCATTCCAATACACATTAAGCAGAA
TATTGCTTGCACGATTGGAATATCTGAGGGAGACCTTCCAAATAAAAGAGGGCGATTTTC
TGACTTTTGATGCTTTGAGGCAAGCTGCTCAATGTGTGGGTCGAGTTATTCGTTCAAAGG
CAGATTATGGCATGATGATTTTTGCTGATAAAAGATATAGCCGTCATGATAAGCGCTCCA
AGTTGCCTGGATGGATACTTTCACATTTACGTGATGCTCACCTGAACTTAAGTACAGACA
TGGCCGTGTATATAGCAAAAGAGTTTTTGAGAAAAATGGCTCAACCATATGATAAGAACG
GTGCTCTGGGCAAGAAAACTCTACTGTCACAAGAAGACTTGGAGAATATGATCACCGGCC
CTGATGGGGAAATGTTGCTTTAAGTGCCAGTACTAGGTGAGAAATCATTTTTGCTAATCT
GTTCCCCGGAATTCTCAGTGTTCTATATGTGGAACAGCACGATTACTACATCCGTTAAAA
TTTCAAGTGAACTGATTCCTGTTAAAGATTTGTAGCAACCTTCAGTTTTGGGCGACTTCA
CTACTTTTAGAGCTGACTTAATTGGAATTTCATGAAGCTTGTACATTTCCGGATCTCTGA
GACTTTCTTGGTTTTTTTAAAGTCGGAATAGGTTTTTTTAAAAAGTTAACATAACATGGA
TGTCGCTTGTCTATTGGCGTAGAAAGATGTATTTATTTTCTACTGAAGCTGATTGTCGCA
AAGTCTGTTCATGCAAAAATGTATCATTGGTAAATTATGGTTTGATTCTCAGTTGTAGGG
AAATGAAAATTTTGTTTATCAATTATAAATTGCTGTGTATCTCAAGTTATCAACTTTTGA
TGAATCCATTTTGAAAATGTGTTATGCATATGTTTCAAATGTATGGACAATAGACCTACC
GCTTACTGCTAATATAATCTATTATTGATATCGTTTTTG