Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g008920.3.1
CDS Infomation

AMP dependent ligase, putative (AHRD V3.3 *** B9R8M5_RICCO)
Sequence

ATGGAGGGGACGATTAGATGCTCTGCAAATTACGTTTCGTTGAGTCCGATAAGTTTTTTG
TTAAGGTCAGGTGTTGTATACAGCAACAGAATTTCTATCGTTTATGGCGATGTTAAGTTT
ACTTGGGCGGAGACAAGACGAAGGTGCTTACAACTTGCTTCTGCTTTTACTCATCTTGGA
ATTTCTCGTGGCGATGTCGTTGCTGTCTTGGCTCCAAATATTCCTGCAATATATGAGCTA
CACTTTGCGGTACCTATGGCTGGGGCAGTTCTTTCTACTCTCAATATTCGTCACGATTCA
GCAATGATCTCGGTTTTACTCAAACATTCAGAGGCAAAAGTCATACTTGTAGATTACCAG
TTTCTTGATGTTGCTAACGGGGCGTTACATATTCTTTCGAAGGAAAATATTAAGTTGCCT
CATCTAATCCTAATCCCCGATGGTGACAAACGCCCATCGAATTCTCCTATTATGGAATAC
GAGCCCTTTTTAGCTATGGGAAGGCCTAATTTTGAGGTAGTATGGCCAAATGATGAGTGG
GATCCCATTGCCCTGAATTATACTTCTGGTACAACGTCGAGTCCAAAGGGTGTCGTGTAT
AGTCATAGAGGAGCATATCTTAATTCTCTGTCAGCTGTTCTTCTCAATGAAATGCCTTCA
ATGCCCGTCTACTTATGGACTGTTCCGATGTTTCATTGCAACGGATGGTGCCTTACATGG
GCCGTGGCAGCACAGGGTGGCACAAATATTTGTCTTAGGAATGTTACTGCTGAAGGAATT
TTTACAAGCATAGATAGGCACCAAGTGAGTCACATGGGCGGTGCACCTACAGTTTTAAAC
ATGATAATACACGCACCTCCTAGTATCCGTAGGCCACTTCCGAGGAAAGTGGCAGTGATG
ACCGGTGGTGCACCACCTCCTCCTCAAGTTTTATTTATGATGGATGAGCTTGGTTTTAAT
GTTACACACTCGTATGGTCTAACGGAAACATATGGTCCTGGAACTGTTTGCGCTTGGAAA
CCTGAATGGAGTTCTCTGTCACGTGATGAGCAGGCGAAGATTAAGGCTCGTCAAGGGTTG
CATCATATAGGTATGGAGGAAGTAGATGTGAAGGATCCAGCTTCAATGAAGAGTGTATTA
CCTGATGCAAAAACAATGGGAGAGGTGATGTTTAGAGGAAATGTTGTGATGAATGGGTAC
TTGAAGAATGCCAAAGCTACAGAAGAAGCTTTTAAAGGGGGTTGGTTTCGAACTGGGGAC
TTGGCTGTGAAGCATCCAGATGGTTACATCGAATTGAAGGATCGTGCTAAGGACATCATT
ATATCCGGTGGAGAAAACATTAGTACAATCGAGGTGGAGTCGGTTTTATTCAGCCATCCA
TCTATTCTTGACGCTGCTGTAGTAGGAAGACCAGATGATTACTGGGGTGAGACACCTTGT
GCCTTTGTAAAACTAAAGGATGGTAACAATGCAACTATGGATGAAATCATCAAGTATTGT
CGTGATCGTTTACCACATTACATGGCTCCGAAAACAGTAATTTTCGATGATTTGCCCAAA
ACATCTACAGGAAAGACACAAAAATTTGTTTTGAGACAGAGGGCCAAAGCTATGGGGAGT
ATTACAAAGCCAGCTAGCAAACTATAA

Peptide Sequence

PEP ID

Solyc06g008920.3.1
PEP Infomation

AMP dependent ligase, putative (AHRD V3.3 *** B9R8M5_RICCO)
Sequence

MEGTIRCSANYVSLSPISFLLRSGVVYSNRISIVYGDVKFTWAETRRRCLQLASAFTHLG
ISRGDVVAVLAPNIPAIYELHFAVPMAGAVLSTLNIRHDSAMISVLLKHSEAKVILVDYQ
FLDVANGALHILSKENIKLPHLILIPDGDKRPSNSPIMEYEPFLAMGRPNFEVVWPNDEW
DPIALNYTSGTTSSPKGVVYSHRGAYLNSLSAVLLNEMPSMPVYLWTVPMFHCNGWCLTW
AVAAQGGTNICLRNVTAEGIFTSIDRHQVSHMGGAPTVLNMIIHAPPSIRRPLPRKVAVM
TGGAPPPPQVLFMMDELGFNVTHSYGLTETYGPGTVCAWKPEWSSLSRDEQAKIKARQGL
HHIGMEEVDVKDPASMKSVLPDAKTMGEVMFRGNVVMNGYLKNAKATEEAFKGGWFRTGD
LAVKHPDGYIELKDRAKDIIISGGENISTIEVESVLFSHPSILDAAVVGRPDDYWGETPC
AFVKLKDGNNATMDEIIKYCRDRLPHYMAPKTVIFDDLPKTSTGKTQKFVLRQRAKAMGS
ITKPASKL*

Transcript Sequence

Transcript ID

Solyc06g008920.3.1
Transcript Infomation

AMP dependent ligase, putative (AHRD V3.3 *** B9R8M5_RICCO)
Sequence

AAACCAGCTACCATAGGAACCTTTTGTAATAGTGGGTCCACTGTAAAAAGTACTAGCTCC
ATATATTAAAAGCTCAAGCTTTATAAATTTAAAATAATAATTACTCTATTTATCTCTGTG
ATATTTCTATCTTCTTCTTCTTCTAAAAAGTCAAATTTTGAAATTTGAAAATTTGAAAAA
TGGAGGGGACGATTAGATGCTCTGCAAATTACGTTTCGTTGAGTCCGATAAGTTTTTTGT
TAAGGTCAGGTGTTGTATACAGCAACAGAATTTCTATCGTTTATGGCGATGTTAAGTTTA
CTTGGGCGGAGACAAGACGAAGGTGCTTACAACTTGCTTCTGCTTTTACTCATCTTGGAA
TTTCTCGTGGCGATGTCGTTGCTGTCTTGGCTCCAAATATTCCTGCAATATATGAGCTAC
ACTTTGCGGTACCTATGGCTGGGGCAGTTCTTTCTACTCTCAATATTCGTCACGATTCAG
CAATGATCTCGGTTTTACTCAAACATTCAGAGGCAAAAGTCATACTTGTAGATTACCAGT
TTCTTGATGTTGCTAACGGGGCGTTACATATTCTTTCGAAGGAAAATATTAAGTTGCCTC
ATCTAATCCTAATCCCCGATGGTGACAAACGCCCATCGAATTCTCCTATTATGGAATACG
AGCCCTTTTTAGCTATGGGAAGGCCTAATTTTGAGGTAGTATGGCCAAATGATGAGTGGG
ATCCCATTGCCCTGAATTATACTTCTGGTACAACGTCGAGTCCAAAGGGTGTCGTGTATA
GTCATAGAGGAGCATATCTTAATTCTCTGTCAGCTGTTCTTCTCAATGAAATGCCTTCAA
TGCCCGTCTACTTATGGACTGTTCCGATGTTTCATTGCAACGGATGGTGCCTTACATGGG
CCGTGGCAGCACAGGGTGGCACAAATATTTGTCTTAGGAATGTTACTGCTGAAGGAATTT
TTACAAGCATAGATAGGCACCAAGTGAGTCACATGGGCGGTGCACCTACAGTTTTAAACA
TGATAATACACGCACCTCCTAGTATCCGTAGGCCACTTCCGAGGAAAGTGGCAGTGATGA
CCGGTGGTGCACCACCTCCTCCTCAAGTTTTATTTATGATGGATGAGCTTGGTTTTAATG
TTACACACTCGTATGGTCTAACGGAAACATATGGTCCTGGAACTGTTTGCGCTTGGAAAC
CTGAATGGAGTTCTCTGTCACGTGATGAGCAGGCGAAGATTAAGGCTCGTCAAGGGTTGC
ATCATATAGGTATGGAGGAAGTAGATGTGAAGGATCCAGCTTCAATGAAGAGTGTATTAC
CTGATGCAAAAACAATGGGAGAGGTGATGTTTAGAGGAAATGTTGTGATGAATGGGTACT
TGAAGAATGCCAAAGCTACAGAAGAAGCTTTTAAAGGGGGTTGGTTTCGAACTGGGGACT
TGGCTGTGAAGCATCCAGATGGTTACATCGAATTGAAGGATCGTGCTAAGGACATCATTA
TATCCGGTGGAGAAAACATTAGTACAATCGAGGTGGAGTCGGTTTTATTCAGCCATCCAT
CTATTCTTGACGCTGCTGTAGTAGGAAGACCAGATGATTACTGGGGTGAGACACCTTGTG
CCTTTGTAAAACTAAAGGATGGTAACAATGCAACTATGGATGAAATCATCAAGTATTGTC
GTGATCGTTTACCACATTACATGGCTCCGAAAACAGTAATTTTCGATGATTTGCCCAAAA
CATCTACAGGAAAGACACAAAAATTTGTTTTGAGACAGAGGGCCAAAGCTATGGGGAGTA
TTACAAAGCCAGCTAGCAAACTATAATTTGTAATTTCCTGTGTTGTATTGTGGATAGACT
GATAAAAAGTCTGGCAAGGCAAGTTGAGGGTCGATCAGAAACAACCTCTCTATCTCTACG
AGGTTGGGGTAACTTCCGTGTATACTCTACCCTCTCCCGACCCCACATTGAATATGTTTT
CGTGGATTGACTTATCGATGTTTTATTTTATTGAATCACATTTATGTTGTGGGAATGCAT
CATTAGTTTTCTTTTAATAAATATATAATGGTGAATGATAATGAT