Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc06g008730.3.1
CDS Infomation	Cell division cycle protein 48 homolog (AHRD V3.3 *** CDC48_CAPAN)
Sequence	ATGGTGGAAAAAAGGAAGCCTTTAATTCTTTCTTCCACCAAAAATCTGCTAAATTCACTC CTGAATTCAGAAACCCAAACCCAGATTTCATTATTGTCAACAGTACAATTGAGAGCTGGA ATTCTTCAAGTATCAAAAGATGCAAGCAAGATTTCAAACCCCAAATTTGTTAATTTTGAT GATTCTGCATTGGTGGGGTTAACTACTTCTCAGCTTAGAAGACTTTGTGTAACTTCTGGT TCACTGGTACTCATCAAGAATGTCAATACAAGTCAACAAAGAATTGGACAAGTGGTAGTT CTAGATCCTCCCAGTTCGGACAAAGTTTTATCTGAGCGTAGCTCACTGTCACATTCTTCC CTGACAACATTTCTCTTGCCATTACATAGCTATCCTGATTGTCACGGTATTAAACCAGAT GGAGAAGTTGCTTATTTATCTCCAATTCTGGCATTTAACCTTAATTTACATTTGTCATGC TTGAGATCAATGATTCACCAAGGCAAAGAGGCTTTGTCACCAATATTTGAGGCCAAATCA GATAACATAGTGAGTGGAAAAGATAATACTCTCATTACTTTAGGACTTGAACCTTTAGAT CAGTTGCCAAAATATGCCACACACCTGAGGGCTTCTTTTGTGAAGATACCAGAGTGTGGC ACTGTTGACTCAGCCAAAAAAGATTCATCTATAGAAGCTGAAGATCGTCAAGAGTTGATT GATATGGAATTGAATAAGTACTTTGGAGTAGATAGATTTCTTTCTAGAGGTGATCTTTTC AGTGTATGCATCAATTGGAACTGCAAATCGGCTCTCTGCATTCCTTGCAGTCAGAAGAAG CAAAATGATGGTTCAGACCTTATATATTTCAAGGTTGTAGGTATGGAACCTTCTGAAGAA CCTGTTCTAAAAGTCAACCGTACTCGAACCGCCCTTGTACTTGGAGGGAATGTACCTTCT GCTGTTCCTCCAGATTTCTTGATTCCTCGGCCACAAGGTTCCCTGCCTTTACAAGTGAGC ACGGTGAAGACTTTAGCCTCCATACTTATACCACCATTATGTCCATCAGCCCTTTCATCA AAATTTCGGGTTGTTGTGTTGTTGCATGGCTTGACTGGATGTGGGAAGAGAACTGTGGTT AAATTTGTTGCTCGTCAGTTAGGCCTCCATGTAGTGGAATACAATTGTCAGAGCATATTT GCAAATTCTGATAGAAAAACATCTGCTGCCCTTGCTGAAGCCTTCAGCATGGCTCGCAGG TACTCTCCTACTATTCTACTTCTTCGCCATTTTGAGGCCTTCCGCAACTTGGCCTCTAAC GAGGGTTCACCACATGACCAAGTTGGTATGAATTTAGAAGTTGCATCTGTCATAAAGGAA TTTACTGAGCCAATTACTGAAGATGAAGAAAATTACTCAGAAGGAAAGTCAAATGCTCAT GATCAAGTAAAGGTTGCTCAACCCATAAATCGGCACCCGGTGCTGTTAGTTGCTGCTGCT GATAGTCCTGAAGGCCTTCCACCAACTATTAGGCGTTGTTTCAGTCATGAGATTAGCATG GATCCATTGAATGAAGAACAAAGGAAGGAAATGCTCTCCCAGTCTCTTCAACATGTTAGT GAACTACTTCCAAATACTTCTTTGGAGGACCTTGTGAAAGATTTGGTTGGTCAGACATCA GGATTCATGCCAAGGGATCTGCGAGCTTTAGTTGCTGATGTTGGTGCAAATCTAGTCCAT AGTCACGCTAGTCAGGATGTGAAGGTTGTGCATGGAGATCTGAAAGAGGGTTCTCATGAG AGCAAGCCAATTGAGAATGATGGCTCACATGACTCGGCAAAGTCACTAAGCAAAGAAGAT GTGATGAAATCTCTGGAACGATCAAAGAAAAGAAATGCAACAGCATTGGGTACTCCAAAG GTTCCAAATGTCAAATGGGAAGATGTTGGTGGGCTTGAGGACGTGAAGAAATCAATTTTG GACACTGTACAGCTGCCTCTTTTACATAAGGACTTGTTTTCGTCTGGATTGCGCAAGCGA TCTGGGGTTCTTTTCTATGGACCTCCTGGTACAGGAAAAACTTTACTGGCAAAAGCTGTT GCTACTGAATGCTCCCTGAATTTTCTCAGTGTGAAAGGGCCTGAGTTGATTAACATGTAC ATAGGAGAATCAGAAAAAAATGTTCGGGACATTTTTCAGAAGGCCAGATCAGCTCGACCA TGTGTCATCTTCTTCGATGAACTTGACTCGCTTGCTCCTGCCAGGGGTGCTTCTGGGGAC TCCGGGGGCGTTATGGATCGAGTGGTTTCTCAGATGCTTGCTGAGATTGATGGCCTGAAC GACTCTACCCAGGACTTGTTTATTATTGGAGCTAGCAACAGGCCAGATCTTATTGATCCT GCCCTTTTGAGGCCAGGGCGATTCGATAAGCTCCTTTATGTTGGTGTTAATTCTGAAGCC TCGTACAGGGAGAGGGTCCTTAAAGCACTTACGCGGAAGTTTAAATTGAAAGAAGATATA TCTTTACTCTCAATAGCAAAAAGGTGTCCTCCAAACTTCACGGGAGCCGACATGTATGCA CTGTGTGCTGATGCTTGGTTTCATGCTGCGAAGCGCAAGGCATTAGCTTCAGATTCGGAT TCAACTGGCTCAGAGGAAATGGATGTCTCAATTATCGTGGAATACGAGGATTTTTTAAAG GTCTTGGGAGAGATCTCCCCCTCGTTGTCAATGGCGGAGCTTAAAAAGTATGAGTTGCTC CGGGAACAGTTTGAAGGACCATCAAGATGA

Peptide Sequence

PEP ID	Solyc06g008730.3.1
PEP Infomation	Cell division cycle protein 48 homolog (AHRD V3.3 *** CDC48_CAPAN)
Sequence	MVEKRKPLILSSTKNLLNSLLNSETQTQISLLSTVQLRAGILQVSKDASKISNPKFVNFD DSALVGLTTSQLRRLCVTSGSLVLIKNVNTSQQRIGQVVVLDPPSSDKVLSERSSLSHSS LTTFLLPLHSYPDCHGIKPDGEVAYLSPILAFNLNLHLSCLRSMIHQGKEALSPIFEAKS DNIVSGKDNTLITLGLEPLDQLPKYATHLRASFVKIPECGTVDSAKKDSSIEAEDRQELI DMELNKYFGVDRFLSRGDLFSVCINWNCKSALCIPCSQKKQNDGSDLIYFKVVGMEPSEE PVLKVNRTRTALVLGGNVPSAVPPDFLIPRPQGSLPLQVSTVKTLASILIPPLCPSALSS KFRVVVLLHGLTGCGKRTVVKFVARQLGLHVVEYNCQSIFANSDRKTSAALAEAFSMARR YSPTILLLRHFEAFRNLASNEGSPHDQVGMNLEVASVIKEFTEPITEDEENYSEGKSNAH DQVKVAQPINRHPVLLVAAADSPEGLPPTIRRCFSHEISMDPLNEEQRKEMLSQSLQHVS ELLPNTSLEDLVKDLVGQTSGFMPRDLRALVADVGANLVHSHASQDVKVVHGDLKEGSHE SKPIENDGSHDSAKSLSKEDVMKSLERSKKRNATALGTPKVPNVKWEDVGGLEDVKKSIL DTVQLPLLHKDLFSSGLRKRSGVLFYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMY IGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLN DSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSEASYRERVLKALTRKFKLKEDI SLLSIAKRCPPNFTGADMYALCADAWFHAAKRKALASDSDSTGSEEMDVSIIVEYEDFLK VLGEISPSLSMAELKKYELLREQFEGPSR*

Transcript Sequence

Transcript ID	Solyc06g008730.3.1
Transcript Infomation	Cell division cycle protein 48 homolog (AHRD V3.3 *** CDC48_CAPAN)
Sequence	CAAATATAAAACCCGACCCAAATATTATGCTGACAACAAAATTACAAAAGTTTGAAAGTG TGATGAACTCTCCTTTCTTGATTTGCTCAATTTGCTTGCTGGAACAAAATTCAATCACCC AAAAACCCATCTTTTCTACTCAATTTCCCCAATTAACTGCAAATTGGAACTAGGGTTCTA ACAGAATTTCAATTATGGTGGAAAAAAGGAAGCCTTTAATTCTTTCTTCCACCAAAAATC TGCTAAATTCACTCCTGAATTCAGAAACCCAAACCCAGATTTCATTATTGTCAACAGTAC AATTGAGAGCTGGAATTCTTCAAGTATCAAAAGATGCAAGCAAGATTTCAAACCCCAAAT TTGTTAATTTTGATGATTCTGCATTGGTGGGGTTAACTACTTCTCAGCTTAGAAGACTTT GTGTAACTTCTGGTTCACTGGTACTCATCAAGAATGTCAATACAAGTCAACAAAGAATTG GACAAGTGGTAGTTCTAGATCCTCCCAGTTCGGACAAAGTTTTATCTGAGCGTAGCTCAC TGTCACATTCTTCCCTGACAACATTTCTCTTGCCATTACATAGCTATCCTGATTGTCACG GTATTAAACCAGATGGAGAAGTTGCTTATTTATCTCCAATTCTGGCATTTAACCTTAATT TACATTTGTCATGCTTGAGATCAATGATTCACCAAGGCAAAGAGGCTTTGTCACCAATAT TTGAGGCCAAATCAGATAACATAGTGAGTGGAAAAGATAATACTCTCATTACTTTAGGAC TTGAACCTTTAGATCAGTTGCCAAAATATGCCACACACCTGAGGGCTTCTTTTGTGAAGA TACCAGAGTGTGGCACTGTTGACTCAGCCAAAAAAGATTCATCTATAGAAGCTGAAGATC GTCAAGAGTTGATTGATATGGAATTGAATAAGTACTTTGGAGTAGATAGATTTCTTTCTA GAGGTGATCTTTTCAGTGTATGCATCAATTGGAACTGCAAATCGGCTCTCTGCATTCCTT GCAGTCAGAAGAAGCAAAATGATGGTTCAGACCTTATATATTTCAAGGTTGTAGGTATGG AACCTTCTGAAGAACCTGTTCTAAAAGTCAACCGTACTCGAACCGCCCTTGTACTTGGAG GGAATGTACCTTCTGCTGTTCCTCCAGATTTCTTGATTCCTCGGCCACAAGGTTCCCTGC CTTTACAAGTGAGCACGGTGAAGACTTTAGCCTCCATACTTATACCACCATTATGTCCAT CAGCCCTTTCATCAAAATTTCGGGTTGTTGTGTTGTTGCATGGCTTGACTGGATGTGGGA AGAGAACTGTGGTTAAATTTGTTGCTCGTCAGTTAGGCCTCCATGTAGTGGAATACAATT GTCAGAGCATATTTGCAAATTCTGATAGAAAAACATCTGCTGCCCTTGCTGAAGCCTTCA GCATGGCTCGCAGGTACTCTCCTACTATTCTACTTCTTCGCCATTTTGAGGCCTTCCGCA ACTTGGCCTCTAACGAGGGTTCACCACATGACCAAGTTGGTATGAATTTAGAAGTTGCAT CTGTCATAAAGGAATTTACTGAGCCAATTACTGAAGATGAAGAAAATTACTCAGAAGGAA AGTCAAATGCTCATGATCAAGTAAAGGTTGCTCAACCCATAAATCGGCACCCGGTGCTGT TAGTTGCTGCTGCTGATAGTCCTGAAGGCCTTCCACCAACTATTAGGCGTTGTTTCAGTC ATGAGATTAGCATGGATCCATTGAATGAAGAACAAAGGAAGGAAATGCTCTCCCAGTCTC TTCAACATGTTAGTGAACTACTTCCAAATACTTCTTTGGAGGACCTTGTGAAAGATTTGG TTGGTCAGACATCAGGATTCATGCCAAGGGATCTGCGAGCTTTAGTTGCTGATGTTGGTG CAAATCTAGTCCATAGTCACGCTAGTCAGGATGTGAAGGTTGTGCATGGAGATCTGAAAG AGGGTTCTCATGAGAGCAAGCCAATTGAGAATGATGGCTCACATGACTCGGCAAAGTCAC TAAGCAAAGAAGATGTGATGAAATCTCTGGAACGATCAAAGAAAAGAAATGCAACAGCAT TGGGTACTCCAAAGGTTCCAAATGTCAAATGGGAAGATGTTGGTGGGCTTGAGGACGTGA AGAAATCAATTTTGGACACTGTACAGCTGCCTCTTTTACATAAGGACTTGTTTTCGTCTG GATTGCGCAAGCGATCTGGGGTTCTTTTCTATGGACCTCCTGGTACAGGAAAAACTTTAC TGGCAAAAGCTGTTGCTACTGAATGCTCCCTGAATTTTCTCAGTGTGAAAGGGCCTGAGT TGATTAACATGTACATAGGAGAATCAGAAAAAAATGTTCGGGACATTTTTCAGAAGGCCA GATCAGCTCGACCATGTGTCATCTTCTTCGATGAACTTGACTCGCTTGCTCCTGCCAGGG GTGCTTCTGGGGACTCCGGGGGCGTTATGGATCGAGTGGTTTCTCAGATGCTTGCTGAGA TTGATGGCCTGAACGACTCTACCCAGGACTTGTTTATTATTGGAGCTAGCAACAGGCCAG ATCTTATTGATCCTGCCCTTTTGAGGCCAGGGCGATTCGATAAGCTCCTTTATGTTGGTG TTAATTCTGAAGCCTCGTACAGGGAGAGGGTCCTTAAAGCACTTACGCGGAAGTTTAAAT TGAAAGAAGATATATCTTTACTCTCAATAGCAAAAAGGTGTCCTCCAAACTTCACGGGAG CCGACATGTATGCACTGTGTGCTGATGCTTGGTTTCATGCTGCGAAGCGCAAGGCATTAG CTTCAGATTCGGATTCAACTGGCTCAGAGGAAATGGATGTCTCAATTATCGTGGAATACG AGGATTTTTTAAAGGTCTTGGGAGAGATCTCCCCCTCGTTGTCAATGGCGGAGCTTAAAA AGTATGAGTTGCTCCGGGAACAGTTTGAAGGACCATCAAGATGACAGAGGCGTTGCTCAG GAACACTGAAGTGTCCCGTGCACGGATAGGGTTCTTCCTACCAATGGGTCAGGGATTCGA GTCGTGACTCACCCAAATGCCCCCCAGTTGGCCCTCTCTCCTTTATTTTGTGTCATTTCA GTCGTTTCGACAGGAAGAAAGATAAAAAGGATACTCAAGATAGATTATGGATCTGCTTTC TACTTCCCATTTTGAGCTAGAGTTGATAATAATTGTCATTCAGCATTTGTTTTTGTGTAT AGAGTAAAATAAAATAACGTACTAGTTGATTTTAGCAATGAAGAACTGTATATTTCTACA TGGTTATTCACTACAGTTCTTTCTATGTCAATTAAACTTTAC