Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc06g008040.3.1
CDS Infomation	CLIP-associating 1 (AHRD V3.3 *** A0A0B0MGS3_GOSAR)
Sequence	ATGGAGGCGGCGCTTGAGCTGGCGCGTGCAAAGGATACGAAGGAGAGAATGGCGGGTGTA GAGCATCTTCATCAAGTTCTAGAAGCTTCGAGAAAAACCTTATCGCCTTCCGAAGTGACT TCACTTGTTGATGTATGCTTGGATCTTCTGAAAGATAACAATTTTAGGGTTACTCAAGGT GCTCTACAGTCACTTGCTTCAGCTGCTGTTTTATCCGGTGAGCATTTGAAGTTACACTTC AATGCGCTTTTGCCAGCTGTTGTTGAACGATTAGGAGATGCGAAGCAGCCGGTTAGAGAT GCAGCTAGGAGGTTGTTGCTTACATTAATGGAGGTTTCTTCACCGACAATCATAGTTGAG AGGGCGGGGTGTTATGCTTGGATGCACAAAAGCTTTAGAGTTCGAGAAGAATTTGCTCGT ACTGTTACATCAGCAATTGGTCTTTTTGCATCGACAGAGCTGCCCCTTCAACGGGCTATC CTTCCTTCAATTTTGCAAATGTTGAATGATCCTAATCATGGAGTTAGGGAAGCAGCCTTA TCATGTATCGAGGTGATGTATTCAGAGGTTGGACCCCAGTTCCGCGATGAGCTTCAGCGC CATCATCTTCCTTCCATGTTGCTAAAAGATATTAATGTGAGACTTGAGAAGATTGAGCCC AAAAGTTGCTCTATAGATGGAAACTCAAATAATTATTCAACTGGTGAGGTGAGATCTGCT AGCCTTAGTTCTAAGAAAAGCAGTCCTAAGGCAAAACGTTCAACAAGAGAGGTGTCTCTC TTTGGAGCGGATGGTGATATTACAGAAAAGCCTGTCGACCCAATTAAAGTGTATTCAGAA AAGGAACTTATAAGGGAATTCGAGAATATTGGCTCTACCCTTGTACCAGAAAAAGATTGG TCTGTCCGTATAGCTGCTATGCAGAGAGTTGAAGCACTTGTTATTGGAGGTGCTGCTGAT TATCCTTGTTTTCGTGGACTTCTAAAGCAACTTGTCGGCCCTTTGAGCACACAGTTAGCT GATCGGCGATCCAGTATAATCAAACAGGCATGTCATTTACTAAACTTCTTATCAAAAGAG CTGTTGGGAGATTTTGAGGCATGTGCTGAGATGTTCATTCCGGTTCTTTTCAAGCTTGTT GTGATAACTGTTCTTGTGATTGCAGAATCTGCTGATAACTGCATAAAGACGATGTTGCGC AACTGCAAAGTTGGTCGGGCACTTCCTCGTATAGCTGACTCTGCAAAGAATGACAAAAAT GCAGTACTTCGTGCAAGATGCTGTGAATACGCACTTCTGATCCTTGAACATTGGCCTGAT GCATCTGAGGTACAACGTTCGGCAGAGCTCTACGAAGACCTTATAAAATGTTGTGTATCT GATGCAATGGGTGAGGTACGATCAACTGCAAGAACTTTGTACAGAATGTTTGCAAGAACC TGGCCAGAACGTTCTAGGCGTTTGCTGTCGTCCTTGGATCCTGCTATTCAAAGGATCATA AATGAGGAAGATGGTGGTATTCATAAACGACACACGTCTCCCTCTGTTCGAGAGAGGAGT TCACACTTCTCACTTGCGTCTCAAACATCTACTTCACATCTACCTGGTTATGGAACATCT GCAATAGTGTCCATGGATAGAAATGCCAATTTATCTTCAGGAACGTCCCTGTCCTCTGGA CTGCTTTTGCCACAAGCAAAACCTGTGGGAGTGGAACGTAGTCTGGAGAGTGTACTTCAT GCCAGCAAACAGAAAGTTTTTGCTATAGAAAACCTACTCAAAGGTCTAGATGTATCTGAG AAAAGTCGCTCCTCTAGTTTGGATCTAGGAGTTGACCCGCCTTCATCCCGTGATCCACCA TTCCCTCTTGCTGTTCCTGCATCAACAAGTCTTACTAATGCTTTAGTGGTTGATGCACCA TCTGCTATGACTAAAGGAAATAATCGCAACGGTGGGTTGGTTTTGTCTGATATCATAACT CAGATCCAGGCCTCAAAGGATTCAGCTAAAGCATCATACCGAAGTAGTGTGGATCGTGAG TCTTTTCCGGCACTCAACTCCTACACTGCAAGAAGAGCTTCTGAAAAACTACAAGATAGA GGACTTGTTGAAGAGACTGAGCCGAGGGATATTAGGCGGTTTATGAACTCACGTGTTGAC AGACAATACTTGGAGACATCTTATAAAGATGCTTTTAGGGACTCCCACATTAATCACGTT CCCAATTTTCAACGTCCTCTCTTAAGAAAAAATACAGCAGGAAGAACGTCAGCTAGCAGG AGGAGGAGTTTTGATGACAGTCTACTTCCTCTAGGAGATCTATCTAGTTATGTGGATGGT CCTGCTTCACTAAATGATGCATTAAGTGAGGGTCTCAATTCTACTTCAGATTGGAAAGCC AGGGTTGCTGCATTTAGCTATCTCCGGTCTTTGCTACAGCAGGGACCTAGAGGTATTCAA GAAATCACTCAGAGTTTTGAGAAGGTTATGAGATTGTTTTTCCAGCATCTTGATGATCCG CATCATAAAGTTGCACAGGCAGCACTTTCAACTCTTGCAGATCTTATTCCTGCTTGCAGA AAGCCATTTGAAAGTTACGTAGAGAGAATCTTGCCACATGTTTTCTCGCGGTTAATTGAT CCCAAAGAATTGGTGAGGCAGCCCTGCTCAACTACCCTAGAAATAGTTAGCAAGTCATAT GGTATAGATTCCCTTTTGCCAGCTTTACTTCGTTCATTAGATGAGCAGCGTTCCCCAAAG GCCAAGCTTGCTGTAATTGAGTTTGCAATTGGCTCATTTAACAAGCATCCTTCAAATTCA GAAGGTGCTGCTAACATTGGCATCCTCAAGTTATGGCTTGCTAAGTTGACACCATTGGTC CATGATAAGAATACCAAATTGAAAGACGCAGCTATCTCGTGCATTATATCAATGTACACA CACTTTGACTCTATTGCAGTTCTGAATTTTATTCTTAGCTTATCAGTTGAAGAACAAAAT TACTTGAGACGGGCTCTTAAGCAGCGCACGCCTCGTATAGAAGTGGATTTGATGAATTTC GTGCAAAGCAAGAAAGAAAGACTACGATCCAAGTCTTCGTATGATCCATCTGATGTTATT GGAACATCATCTGAAGAGGGATATATTGGCATTTCAAAGAAGAGTAATGTATTTGGAAGG TACTCTGCTGGTGCAGTTGATACTGATAGCATCAGAAAGTGGAATTCTCTTCAAGACCCA ACCTATATGACTAGGTCTATTGGCCAGTTGTCTGATGGTACTCAGGACCTCTATCATGGT GTGGAAACTGGTCCCAACACTGATATTTCTGTTACAAAAGCCAAGGAGTTGAAATTTGGG GCACTAACCACAAGCGAGAATGATGGATTATGGACAACATTAGAAAGCAAGGACAACAGC TCAAACATGGAACACACCTCCGCTCCTCATCTGGATGTCAATGGGCTAAATGGGCTAGTT GATTCAGACCATCTACAGATTGCTCTTGATGCTGGAGCTGATAATGAGTCTTCATCTGAC ATGGGGCTTAATCACATAAAACTTTCTGATCTCCAGATAAATCCAACTCTGGAAACTGGA CCAAGCATCCCTCAGATTCTTCATTTGATTTGCAATGGTGATGATGGTAGTCCTGATGCT AACAAGCGTGATGCACTTCAACAATTGGTCAAAGCTTCTGTTGCTAATGATCAATCCATC TGGAGCAAGTACTTCAATCAGATATTAACTGCTGTGCTTGAAGTGTTAGATGATTCTGAG TCATGGACAAGGGAACTTGCCCTATCTCTGATTCTTGAAATGCTGAAGAATCAGAAAAAT GCAATGGAGGACTCAGTTGAGATCATAATTGAAAAGCTGCTCCATGTGACCAAGGATGAT GTTGCAAAAGTTGCAAATGAAGCTGAGAATTGTTTATCTACAATTTTGTCCCAGTACGAC CCATTCAGATGCCTAAGTGTTATTGTTCCTTTGCTTGTCACTGAAGATGAGAAGACTCTT GTAACTTGTATAAACTGTTTGACGAAGCTTGTTGGAAGGCTCTCTCAGGAGGAATTGATG TCTCAGCTTCCTTCATTCTTGCCTTCCCTGTTTGATGCTTTTGGAAACCAGAGCGCTGAT GTCCGCAAGACTGTTGTATTCTGTTTGGTTGACATATACATCATGCTGGGCAAAGCATTT ATGCCATACTTGGAAGGGCTGAACAGCACACAGTTACGATTGGTGACCATTTATGCAAAT CGAATATCGCAGGCCAGAACAGGTGCTCCTGTAGATGCAAGCCATAGTTAG

Peptide Sequence

PEP ID	Solyc06g008040.3.1
PEP Infomation	CLIP-associating 1 (AHRD V3.3 *** A0A0B0MGS3_GOSAR)
Sequence	MEAALELARAKDTKERMAGVEHLHQVLEASRKTLSPSEVTSLVDVCLDLLKDNNFRVTQG ALQSLASAAVLSGEHLKLHFNALLPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVE RAGCYAWMHKSFRVREEFARTVTSAIGLFASTELPLQRAILPSILQMLNDPNHGVREAAL SCIEVMYSEVGPQFRDELQRHHLPSMLLKDINVRLEKIEPKSCSIDGNSNNYSTGEVRSA SLSSKKSSPKAKRSTREVSLFGADGDITEKPVDPIKVYSEKELIREFENIGSTLVPEKDW SVRIAAMQRVEALVIGGAADYPCFRGLLKQLVGPLSTQLADRRSSIIKQACHLLNFLSKE LLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVGRALPRIADSAKNDKN AVLRARCCEYALLILEHWPDASEVQRSAELYEDLIKCCVSDAMGEVRSTARTLYRMFART WPERSRRLLSSLDPAIQRIINEEDGGIHKRHTSPSVRERSSHFSLASQTSTSHLPGYGTS AIVSMDRNANLSSGTSLSSGLLLPQAKPVGVERSLESVLHASKQKVFAIENLLKGLDVSE KSRSSSLDLGVDPPSSRDPPFPLAVPASTSLTNALVVDAPSAMTKGNNRNGGLVLSDIIT QIQASKDSAKASYRSSVDRESFPALNSYTARRASEKLQDRGLVEETEPRDIRRFMNSRVD RQYLETSYKDAFRDSHINHVPNFQRPLLRKNTAGRTSASRRRSFDDSLLPLGDLSSYVDG PASLNDALSEGLNSTSDWKARVAAFSYLRSLLQQGPRGIQEITQSFEKVMRLFFQHLDDP HHKVAQAALSTLADLIPACRKPFESYVERILPHVFSRLIDPKELVRQPCSTTLEIVSKSY GIDSLLPALLRSLDEQRSPKAKLAVIEFAIGSFNKHPSNSEGAANIGILKLWLAKLTPLV HDKNTKLKDAAISCIISMYTHFDSIAVLNFILSLSVEEQNYLRRALKQRTPRIEVDLMNF VQSKKERLRSKSSYDPSDVIGTSSEEGYIGISKKSNVFGRYSAGAVDTDSIRKWNSLQDP TYMTRSIGQLSDGTQDLYHGVETGPNTDISVTKAKELKFGALTTSENDGLWTTLESKDNS SNMEHTSAPHLDVNGLNGLVDSDHLQIALDAGADNESSSDMGLNHIKLSDLQINPTLETG PSIPQILHLICNGDDGSPDANKRDALQQLVKASVANDQSIWSKYFNQILTAVLEVLDDSE SWTRELALSLILEMLKNQKNAMEDSVEIIIEKLLHVTKDDVAKVANEAENCLSTILSQYD PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMSQLPSFLPSLFDAFGNQSAD VRKTVVFCLVDIYIMLGKAFMPYLEGLNSTQLRLVTIYANRISQARTGAPVDASHS*

Transcript Sequence

Transcript ID	Solyc06g008040.3.1
Transcript Infomation	CLIP-associating 1 (AHRD V3.3 *** A0A0B0MGS3_GOSAR)
Sequence	ATATATAAATAATACTTTATCAAATAAATTATAAGATCATAAAAATTCTATATTTGTGAC ATAATTCTTTACCCAATCAATTTACAAAGTTAAATGAAAAGATATTTTTAACTTCTTACA AACTTGATAAAAAATACTAGATATTTATGGATTAGTTTTCCACTTCTCAAATTTCCTAAA AAATGGCATTCCTTTTTCTCCTCATAGCCAAAAATATTATACTCTAAATTTATATATATA TATATTCTTTCATAAAATTTTGATAAGATTACTTTACTCATAATTATTTTTTTTTGATTT TAAACATTGAATCTTGAAGAGTATTATTATTCTCAAATATATTTTATCAAACGTAAATTT AAATTAGTTGGACTATTTTATAAATATCGAATATTAGACGTGAAACAAAAAAATAAAAAA AATTTTAAATTCTTTTTTTATTTATTATTATTAAATTTTCTTACTAATTTTATTTACTCT TCACCTTTTTCTCTCTCTCTCACTTTCTTCTTCAGTCTCCACAGTTCAAACTTCACTTTC TCTCTATCCACCATTTTCATCAAAGCACTTTTTTCTTCTTCTCACAGATCTGACCCGTTT TACTAGATCGGAGCTCCGATAACCCGACCGTCCATCTCCAATGGAGGCGGCGCTTGAGCT GGCGCGTGCAAAGGATACGAAGGAGAGAATGGCGGGTGTAGAGCATCTTCATCAAGTTCT AGAAGCTTCGAGAAAAACCTTATCGCCTTCCGAAGTGACTTCACTTGTTGATGTATGCTT GGATCTTCTGAAAGATAACAATTTTAGGGTTACTCAAGGTGCTCTACAGTCACTTGCTTC AGCTGCTGTTTTATCCGGTGAGCATTTGAAGTTACACTTCAATGCGCTTTTGCCAGCTGT TGTTGAACGATTAGGAGATGCGAAGCAGCCGGTTAGAGATGCAGCTAGGAGGTTGTTGCT TACATTAATGGAGGTTTCTTCACCGACAATCATAGTTGAGAGGGCGGGGTGTTATGCTTG GATGCACAAAAGCTTTAGAGTTCGAGAAGAATTTGCTCGTACTGTTACATCAGCAATTGG TCTTTTTGCATCGACAGAGCTGCCCCTTCAACGGGCTATCCTTCCTTCAATTTTGCAAAT GTTGAATGATCCTAATCATGGAGTTAGGGAAGCAGCCTTATCATGTATCGAGGTGATGTA TTCAGAGGTTGGACCCCAGTTCCGCGATGAGCTTCAGCGCCATCATCTTCCTTCCATGTT GCTAAAAGATATTAATGTGAGACTTGAGAAGATTGAGCCCAAAAGTTGCTCTATAGATGG AAACTCAAATAATTATTCAACTGGTGAGGTGAGATCTGCTAGCCTTAGTTCTAAGAAAAG CAGTCCTAAGGCAAAACGTTCAACAAGAGAGGTGTCTCTCTTTGGAGCGGATGGTGATAT TACAGAAAAGCCTGTCGACCCAATTAAAGTGTATTCAGAAAAGGAACTTATAAGGGAATT CGAGAATATTGGCTCTACCCTTGTACCAGAAAAAGATTGGTCTGTCCGTATAGCTGCTAT GCAGAGAGTTGAAGCACTTGTTATTGGAGGTGCTGCTGATTATCCTTGTTTTCGTGGACT TCTAAAGCAACTTGTCGGCCCTTTGAGCACACAGTTAGCTGATCGGCGATCCAGTATAAT CAAACAGGCATGTCATTTACTAAACTTCTTATCAAAAGAGCTGTTGGGAGATTTTGAGGC ATGTGCTGAGATGTTCATTCCGGTTCTTTTCAAGCTTGTTGTGATAACTGTTCTTGTGAT TGCAGAATCTGCTGATAACTGCATAAAGACGATGTTGCGCAACTGCAAAGTTGGTCGGGC ACTTCCTCGTATAGCTGACTCTGCAAAGAATGACAAAAATGCAGTACTTCGTGCAAGATG CTGTGAATACGCACTTCTGATCCTTGAACATTGGCCTGATGCATCTGAGGTACAACGTTC GGCAGAGCTCTACGAAGACCTTATAAAATGTTGTGTATCTGATGCAATGGGTGAGGTACG ATCAACTGCAAGAACTTTGTACAGAATGTTTGCAAGAACCTGGCCAGAACGTTCTAGGCG TTTGCTGTCGTCCTTGGATCCTGCTATTCAAAGGATCATAAATGAGGAAGATGGTGGTAT TCATAAACGACACACGTCTCCCTCTGTTCGAGAGAGGAGTTCACACTTCTCACTTGCGTC TCAAACATCTACTTCACATCTACCTGGTTATGGAACATCTGCAATAGTGTCCATGGATAG AAATGCCAATTTATCTTCAGGAACGTCCCTGTCCTCTGGACTGCTTTTGCCACAAGCAAA ACCTGTGGGAGTGGAACGTAGTCTGGAGAGTGTACTTCATGCCAGCAAACAGAAAGTTTT TGCTATAGAAAACCTACTCAAAGGTCTAGATGTATCTGAGAAAAGTCGCTCCTCTAGTTT GGATCTAGGAGTTGACCCGCCTTCATCCCGTGATCCACCATTCCCTCTTGCTGTTCCTGC ATCAACAAGTCTTACTAATGCTTTAGTGGTTGATGCACCATCTGCTATGACTAAAGGAAA TAATCGCAACGGTGGGTTGGTTTTGTCTGATATCATAACTCAGATCCAGGCCTCAAAGGA TTCAGCTAAAGCATCATACCGAAGTAGTGTGGATCGTGAGTCTTTTCCGGCACTCAACTC CTACACTGCAAGAAGAGCTTCTGAAAAACTACAAGATAGAGGACTTGTTGAAGAGACTGA GCCGAGGGATATTAGGCGGTTTATGAACTCACGTGTTGACAGACAATACTTGGAGACATC TTATAAAGATGCTTTTAGGGACTCCCACATTAATCACGTTCCCAATTTTCAACGTCCTCT CTTAAGAAAAAATACAGCAGGAAGAACGTCAGCTAGCAGGAGGAGGAGTTTTGATGACAG TCTACTTCCTCTAGGAGATCTATCTAGTTATGTGGATGGTCCTGCTTCACTAAATGATGC ATTAAGTGAGGGTCTCAATTCTACTTCAGATTGGAAAGCCAGGGTTGCTGCATTTAGCTA TCTCCGGTCTTTGCTACAGCAGGGACCTAGAGGTATTCAAGAAATCACTCAGAGTTTTGA GAAGGTTATGAGATTGTTTTTCCAGCATCTTGATGATCCGCATCATAAAGTTGCACAGGC AGCACTTTCAACTCTTGCAGATCTTATTCCTGCTTGCAGAAAGCCATTTGAAAGTTACGT AGAGAGAATCTTGCCACATGTTTTCTCGCGGTTAATTGATCCCAAAGAATTGGTGAGGCA GCCCTGCTCAACTACCCTAGAAATAGTTAGCAAGTCATATGGTATAGATTCCCTTTTGCC AGCTTTACTTCGTTCATTAGATGAGCAGCGTTCCCCAAAGGCCAAGCTTGCTGTAATTGA GTTTGCAATTGGCTCATTTAACAAGCATCCTTCAAATTCAGAAGGTGCTGCTAACATTGG CATCCTCAAGTTATGGCTTGCTAAGTTGACACCATTGGTCCATGATAAGAATACCAAATT GAAAGACGCAGCTATCTCGTGCATTATATCAATGTACACACACTTTGACTCTATTGCAGT TCTGAATTTTATTCTTAGCTTATCAGTTGAAGAACAAAATTACTTGAGACGGGCTCTTAA GCAGCGCACGCCTCGTATAGAAGTGGATTTGATGAATTTCGTGCAAAGCAAGAAAGAAAG ACTACGATCCAAGTCTTCGTATGATCCATCTGATGTTATTGGAACATCATCTGAAGAGGG ATATATTGGCATTTCAAAGAAGAGTAATGTATTTGGAAGGTACTCTGCTGGTGCAGTTGA TACTGATAGCATCAGAAAGTGGAATTCTCTTCAAGACCCAACCTATATGACTAGGTCTAT TGGCCAGTTGTCTGATGGTACTCAGGACCTCTATCATGGTGTGGAAACTGGTCCCAACAC TGATATTTCTGTTACAAAAGCCAAGGAGTTGAAATTTGGGGCACTAACCACAAGCGAGAA TGATGGATTATGGACAACATTAGAAAGCAAGGACAACAGCTCAAACATGGAACACACCTC CGCTCCTCATCTGGATGTCAATGGGCTAAATGGGCTAGTTGATTCAGACCATCTACAGAT TGCTCTTGATGCTGGAGCTGATAATGAGTCTTCATCTGACATGGGGCTTAATCACATAAA ACTTTCTGATCTCCAGATAAATCCAACTCTGGAAACTGGACCAAGCATCCCTCAGATTCT TCATTTGATTTGCAATGGTGATGATGGTAGTCCTGATGCTAACAAGCGTGATGCACTTCA ACAATTGGTCAAAGCTTCTGTTGCTAATGATCAATCCATCTGGAGCAAGTACTTCAATCA GATATTAACTGCTGTGCTTGAAGTGTTAGATGATTCTGAGTCATGGACAAGGGAACTTGC CCTATCTCTGATTCTTGAAATGCTGAAGAATCAGAAAAATGCAATGGAGGACTCAGTTGA GATCATAATTGAAAAGCTGCTCCATGTGACCAAGGATGATGTTGCAAAAGTTGCAAATGA AGCTGAGAATTGTTTATCTACAATTTTGTCCCAGTACGACCCATTCAGATGCCTAAGTGT TATTGTTCCTTTGCTTGTCACTGAAGATGAGAAGACTCTTGTAACTTGTATAAACTGTTT GACGAAGCTTGTTGGAAGGCTCTCTCAGGAGGAATTGATGTCTCAGCTTCCTTCATTCTT GCCTTCCCTGTTTGATGCTTTTGGAAACCAGAGCGCTGATGTCCGCAAGACTGTTGTATT CTGTTTGGTTGACATATACATCATGCTGGGCAAAGCATTTATGCCATACTTGGAAGGGCT GAACAGCACACAGTTACGATTGGTGACCATTTATGCAAATCGAATATCGCAGGCCAGAAC AGGTGCTCCTGTAGATGCAAGCCATAGTTAGCTTTTTTTGGGTATTCATTGTAGGTATAG ATGTGTGTATTTGTGATTTAATATTTGATGTGTTTTGTATATCTATGTGAATGTGTATTT CTTTTTTGGTGGGTGAGGTTGTATTCTTTCTTTTTTCCTTTTCTGCTAATTGGTTGGTAG TTTTGGAGTGAGAACAAATGTGATATTGTACACAGTGAACTTTGAGCTCATAGTGAAATC TACAGTTTTTGGACTATTATTTACATCATTTTAACAGGTAACAATACA