Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g005690.2.1
CDS Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *-* A0A124SCR9_CYNCS)
Sequence

ATGGTCATTGGCACCAAAGTAACAGACATATACACAAAGCTTGTTGAGACCTATGCCCAA
AATGGTGCTTTGCAATTAGGCAAAGCATTACATGCACATTTAATCATCAATGGATTGGCT
CAAAGAACTCATTTTGCTTCAAAGCTTATTGCTTTTTATACAGAATGTAAACAGTTATCC
CATGCACGTAAACTGTTTGATAAAATTCCCCAATCAGATACTCGTCGTTGGATTGTTCTG
ATCGGGGCGTATGCTCGTCGTGGGTTTTACGAGGAAGCAATGTGTGTTTTTCATGAAATG
CAAAAGGGTGGAAAGAAGCCGAATAAGTTTGTTCTTCCTAGTGTACTTAAAGCTTGTGGA
CGCTTCAATGATTTTCGAACAGGGGAGATATTGCACGGTGTGATTCTGAAGAACATGTTT
GAATTTGACTCATATGTGGTTAGTGCATTGATAGATATGTATTCAAAATGTGGTAGAGTT
GAGAAGGCGAAAAGGGTGTTTAATGGGACGGTGGATAAAGATTTGGTCGCGTTGAATGCT
TTGGTTTCGGGTTGTGTACAGCAGGGTATAGTAAATGAAGCACTGGATTTGGTTGAGGAA
ATGAAAGTTCAAGGTATGAAGCCTAATGTGGTGACATACAATACTCTGATTGCAGGGTTT
TCGCAAGAAGATGATCAAGGTATGGTTTGTAAAGTTGTTGAATTGATGCATGATGATGGA
CTTGAGCTAGATGTAGTTTCGTGGACTAGTATAGTTTCTGGGCTAGTGCAGAATTTTCAT
AACAAGGAAGCTTTTGACACGTTTAAGCGAATGTTGGATGATGGGACGTCTCCAAGTTCA
GCTACGATTAGTAGCATATTGCCTGCTTGTGCAACTGTGGTAGATTTGATTCGTGGGAAG
GAGGTACATGGTTATGCGGTAGTGATGGGGATCGAGAAGGATGTATACGTGAAAAGTGCT
CTCATAGACATGTATGCAAAATGTGGATTTATATCTGAAGCAAAGCACTTGTTTTCTAAG
ATGTGTGAAAGAAATACAGTAACATGGAACTCGATGATTTTTGGCTACGCGAATCATGGG
TATTGCAGTGAAGCAATTGAGTTATTCAATCAAATGTTAAGAGAGGAAGATAGGAAACCA
GATCACTTGACTTTCACAGCAGCTCTCACTGCTTGTAGTCATGCTGGACTTGTGCAGTAT
GGAGAAAGTTTGTTCAAACAGATGCAGGAAATGTACACGATAAAGCCAAGATTGGAGCAT
TTCGCGTGTATGGTGGATCTATTAGGGAGAGCAGGGAAACTCGATGAGGCTTACGATTTG
ATTCAGAGGATGTCAATTGAACCTGATTTATTTGTTTGGGGAGCATTATTAGGGGCATGT
AAACAGCACGGAAATATGGATTTAGCAGCGGTTGCAGCTGAGAAATTGGCTAAACTTGAA
CCTGAGAGTGCTGGAAGTAGTGTGTTGCTATCAAGTTTATATGCTGATTCAAGTAAGTGG
ATAAACGTCGCGAAGGTAAAAAGGGTGATCAAGAAGAAGAAACTGAAAAAGGTTCCTGGA
TGTAGTTGGGTAGAAGTTGCATAA

Peptide Sequence

PEP ID

Solyc06g005690.2.1
PEP Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *-* A0A124SCR9_CYNCS)
Sequence

MVIGTKVTDIYTKLVETYAQNGALQLGKALHAHLIINGLAQRTHFASKLIAFYTECKQLS
HARKLFDKIPQSDTRRWIVLIGAYARRGFYEEAMCVFHEMQKGGKKPNKFVLPSVLKACG
RFNDFRTGEILHGVILKNMFEFDSYVVSALIDMYSKCGRVEKAKRVFNGTVDKDLVALNA
LVSGCVQQGIVNEALDLVEEMKVQGMKPNVVTYNTLIAGFSQEDDQGMVCKVVELMHDDG
LELDVVSWTSIVSGLVQNFHNKEAFDTFKRMLDDGTSPSSATISSILPACATVVDLIRGK
EVHGYAVVMGIEKDVYVKSALIDMYAKCGFISEAKHLFSKMCERNTVTWNSMIFGYANHG
YCSEAIELFNQMLREEDRKPDHLTFTAALTACSHAGLVQYGESLFKQMQEMYTIKPRLEH
FACMVDLLGRAGKLDEAYDLIQRMSIEPDLFVWGALLGACKQHGNMDLAAVAAEKLAKLE
PESAGSSVLLSSLYADSSKWINVAKVKRVIKKKKLKKVPGCSWVEVA*

Transcript Sequence

Transcript ID

Solyc06g005690.2.1
Transcript Infomation

Pentatricopeptide repeat-containing protein (AHRD V3.3 *-* A0A124SCR9_CYNCS)
Sequence

ATGGTCATTGGCACCAAAGTAACAGACATATACACAAAGCTTGTTGAGACCTATGCCCAA
AATGGTGCTTTGCAATTAGGCAAAGCATTACATGCACATTTAATCATCAATGGATTGGCT
CAAAGAACTCATTTTGCTTCAAAGCTTATTGCTTTTTATACAGAATGTAAACAGTTATCC
CATGCACGTAAACTGTTTGATAAAATTCCCCAATCAGATACTCGTCGTTGGATTGTTCTG
ATCGGGGCGTATGCTCGTCGTGGGTTTTACGAGGAAGCAATGTGTGTTTTTCATGAAATG
CAAAAGGGTGGAAAGAAGCCGAATAAGTTTGTTCTTCCTAGTGTACTTAAAGCTTGTGGA
CGCTTCAATGATTTTCGAACAGGGGAGATATTGCACGGTGTGATTCTGAAGAACATGTTT
GAATTTGACTCATATGTGGTTAGTGCATTGATAGATATGTATTCAAAATGTGGTAGAGTT
GAGAAGGCGAAAAGGGTGTTTAATGGGACGGTGGATAAAGATTTGGTCGCGTTGAATGCT
TTGGTTTCGGGTTGTGTACAGCAGGGTATAGTAAATGAAGCACTGGATTTGGTTGAGGAA
ATGAAAGTTCAAGGTATGAAGCCTAATGTGGTGACATACAATACTCTGATTGCAGGGTTT
TCGCAAGAAGATGATCAAGGTATGGTTTGTAAAGTTGTTGAATTGATGCATGATGATGGA
CTTGAGCTAGATGTAGTTTCGTGGACTAGTATAGTTTCTGGGCTAGTGCAGAATTTTCAT
AACAAGGAAGCTTTTGACACGTTTAAGCGAATGTTGGATGATGGGACGTCTCCAAGTTCA
GCTACGATTAGTAGCATATTGCCTGCTTGTGCAACTGTGGTAGATTTGATTCGTGGGAAG
GAGGTACATGGTTATGCGGTAGTGATGGGGATCGAGAAGGATGTATACGTGAAAAGTGCT
CTCATAGACATGTATGCAAAATGTGGATTTATATCTGAAGCAAAGCACTTGTTTTCTAAG
ATGTGTGAAAGAAATACAGTAACATGGAACTCGATGATTTTTGGCTACGCGAATCATGGG
TATTGCAGTGAAGCAATTGAGTTATTCAATCAAATGTTAAGAGAGGAAGATAGGAAACCA
GATCACTTGACTTTCACAGCAGCTCTCACTGCTTGTAGTCATGCTGGACTTGTGCAGTAT
GGAGAAAGTTTGTTCAAACAGATGCAGGAAATGTACACGATAAAGCCAAGATTGGAGCAT
TTCGCGTGTATGGTGGATCTATTAGGGAGAGCAGGGAAACTCGATGAGGCTTACGATTTG
ATTCAGAGGATGTCAATTGAACCTGATTTATTTGTTTGGGGAGCATTATTAGGGGCATGT
AAACAGCACGGAAATATGGATTTAGCAGCGGTTGCAGCTGAGAAATTGGCTAAACTTGAA
CCTGAGAGTGCTGGAAGTAGTGTGTTGCTATCAAGTTTATATGCTGATTCAAGTAAGTGG
ATAAACGTCGCGAAGGTAAAAAGGGTGATCAAGAAGAAGAAACTGAAAAAGGTTCCTGGA
TGTAGTTGGGTAGAAGTTGCATAA