Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc06g005180.1.1
CDS Infomation	LOW QUALITY:Zinc finger family protein (AHRD V3.3 *** B9GPB9_POPTR)
Sequence	ATGGTGGATAACAATAATAATAATAATAGCCAAAAAAATGAACCATCAACTCATGTTTTA CTACTCTATTGTAGAGTATGTAAGAGGGGATTTAATAGTGCTGGGGCACTTGGTGGGCAC ATGAGATCTCATGGATCAGTAGGGGATAATAGTGGTAGTAATAAAAACTATGGAGAAGAT ATTAGTGAACAAAAATATATGATGAATAATTTTAGAAGGGAAAAATTGGAGGGTCAAAAA CACTCGTATAATCTTCGTACTAATTCTAATCGATTAATGTTAGGGAATAATCGATCAACA AGTGATCATGATCATGATCATGTAGATGTTGAAAAATCGGAGTATTATTATTATGGTCCC GATGTTAAGGATAAACAACATTGTTCAAGAGAAGAAGAAGAAGATCTCGCAAATTGTTTA GTTATGTTATCGAACAAATCTTATGATTTGTCCGATAACAGTAACAAGGAGGCTAAAAAC AAGGCTAAAGAAGTGGAAAAGGGAATGTTTCAATGTAAAGGATGTAAGAAAATTTTTAAT TCTCACCAAGCTTTAGGGGGACATAGAGCGAGTCACAAGAAAGTTAAAGGGTGTTATGCT GCAAAACTCGACGACAACAACGATGATGATGATAATGACATTGATGACGACTCAATAATC TCTCCTAGTGATTTGATTTTGCATCAAGAATCCAACGATTTTCAATCTCAATCCCCAACA TCATCAAGCTCATTTTCAAGAAAGAGATCAAGGGTTCACCAATGCTCGATTTGCCATCGA GTCTTTTCATCTGGACAAGCCTTGGGTGGACACAAAAGGTGTCACTGGCTAACCTCGAGT TTGCCAGAGGCTACCTTTATACCCACTTTTCAAGAAATCCAATATCACAATCAAGAACAA GTACTATACAACAAACCTTTATTTATCAACAACTCTCATCAACCACTAGATCTAAATTTT CCGGAACAACTAGGCAATCCAACTGAAGTTGGGTTGAAACTACACAATAATCCATTTGAA CATGAAGGCCCAAGAAGCCAACTCCAGCTATGGACAGAGGATACTAATCAAAATCACAAG CGCAAAGATTCTTTGTGTAGGGAGGAAAATAGAAAGGCAAAGGAAGCAAAATTGAGTAAC CTTAAAGATGTGAATTTGGATAAAGGCTCTTCTTCTTGGTTACAAGTAGGAATTGGTCCA ACTCCTGATATTTTTGCAACCCTATAA

Peptide Sequence

PEP ID	Solyc06g005180.1.1
PEP Infomation	LOW QUALITY:Zinc finger family protein (AHRD V3.3 *** B9GPB9_POPTR)
Sequence	MVDNNNNNNSQKNEPSTHVLLLYCRVCKRGFNSAGALGGHMRSHGSVGDNSGSNKNYGED ISEQKYMMNNFRREKLEGQKHSYNLRTNSNRLMLGNNRSTSDHDHDHVDVEKSEYYYYGP DVKDKQHCSREEEEDLANCLVMLSNKSYDLSDNSNKEAKNKAKEVEKGMFQCKGCKKIFN SHQALGGHRASHKKVKGCYAAKLDDNNDDDDNDIDDDSIISPSDLILHQESNDFQSQSPT SSSSFSRKRSRVHQCSICHRVFSSGQALGGHKRCHWLTSSLPEATFIPTFQEIQYHNQEQ VLYNKPLFINNSHQPLDLNFPEQLGNPTEVGLKLHNNPFEHEGPRSQLQLWTEDTNQNHK RKDSLCREENRKAKEAKLSNLKDVNLDKGSSSWLQVGIGPTPDIFATL*

Transcript Sequence

Transcript ID	Solyc06g005180.1.1
Transcript Infomation	LOW QUALITY:Zinc finger family protein (AHRD V3.3 *** B9GPB9_POPTR)
Sequence	ATGGTGGATAACAATAATAATAATAATAGCCAAAAAAATGAACCATCAACTCATGTTTTA CTACTCTATTGTAGAGTATGTAAGAGGGGATTTAATAGTGCTGGGGCACTTGGTGGGCAC ATGAGATCTCATGGATCAGTAGGGGATAATAGTGGTAGTAATAAAAACTATGGAGAAGAT ATTAGTGAACAAAAATATATGATGAATAATTTTAGAAGGGAAAAATTGGAGGGTCAAAAA CACTCGTATAATCTTCGTACTAATTCTAATCGATTAATGTTAGGGAATAATCGATCAACA AGTGATCATGATCATGATCATGTAGATGTTGAAAAATCGGAGTATTATTATTATGGTCCC GATGTTAAGGATAAACAACATTGTTCAAGAGAAGAAGAAGAAGATCTCGCAAATTGTTTA GTTATGTTATCGAACAAATCTTATGATTTGTCCGATAACAGTAACAAGGAGGCTAAAAAC AAGGCTAAAGAAGTGGAAAAGGGAATGTTTCAATGTAAAGGATGTAAGAAAATTTTTAAT TCTCACCAAGCTTTAGGGGGACATAGAGCGAGTCACAAGAAAGTTAAAGGGTGTTATGCT GCAAAACTCGACGACAACAACGATGATGATGATAATGACATTGATGACGACTCAATAATC TCTCCTAGTGATTTGATTTTGCATCAAGAATCCAACGATTTTCAATCTCAATCCCCAACA TCATCAAGCTCATTTTCAAGAAAGAGATCAAGGGTTCACCAATGCTCGATTTGCCATCGA GTCTTTTCATCTGGACAAGCCTTGGGTGGACACAAAAGGTGTCACTGGCTAACCTCGAGT TTGCCAGAGGCTACCTTTATACCCACTTTTCAAGAAATCCAATATCACAATCAAGAACAA GTACTATACAACAAACCTTTATTTATCAACAACTCTCATCAACCACTAGATCTAAATTTT CCGGAACAACTAGGCAATCCAACTGAAGTTGGGTTGAAACTACACAATAATCCATTTGAA CATGAAGGCCCAAGAAGCCAACTCCAGCTATGGACAGAGGATACTAATCAAAATCACAAG CGCAAAGATTCTTTGTGTAGGGAGGAAAATAGAAAGGCAAAGGAAGCAAAATTGAGTAAC CTTAAAGATGTGAATTTGGATAAAGGCTCTTCTTCTTGGTTACAAGTAGGAATTGGTCCA ACTCCTGATATTTTTGCAACCCTATAA