Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g005140.3.1
CDS Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H877_POPTR)
Sequence

ATGTTGCTCCGTTTGATTCGGAGATCTTATGCTGCTGTTCGCCCTCTATCGACTGAAGCT
TCGACAACAGTTAAGTCCACAGGATCAGGAGGTGGAAGTGGCATTACCACTAGCTTAGAA
GGTGGCACTAGTACTCGTGGCAGAGACACACTAGGGAGGAGGCTTTTGAGTTTGATCTAT
GCAAAACGTAGTGCTGTCATTGCTATACGCAAGTGGAAGGAAGAGGGGCACCCTGTCCGG
AAGTATGAGCTCAATCGCATTGTCCGGGAGTTGCGAAGACACAAACGATATAAACACGCC
CTTGAGGTTTGTGAATGGATGAGGGTACAAGATGATATCGAACTATTATCTGGTGACTAT
GCAGTTCATTTGGATTTGATTGCAAAAGTTCGTGGTATGAACAGTGCAGAGAAGTTTTTT
GAAGACCTACCTGATAAACTGAAGGTCCAGACCACCTGTACTGCCCTTCTCCACACCTAT
GTCCAGCATAAGGACACTTCTAAAGCTGAGTCTTTGATGGAAAAAATGTCTGAATGCGGG
TTCTTGAAGTACCCTCTTCCTTATAATCATATGCTTACCTTATACATATCCCAAGGGCAA
CTAGAAAAGGTTCCAGGCCTGATTCAGGAATTGAAGAAAAATACATCTCCTGATATTGTC
ACATACAATCTGGAGTTGGCAGTTTTTGCATCACAGAATAATGTTGAAGCTGCGGAAAAA
GCGTTCCTTGAGCTAAAGAAGGCAAAATTGGATCCTGACTGGATAACATTTAGCACCTTA
ACCAACATCTACATTAAAAGCTCACTTCAGGATAAGGCAAAGTCAACTTTGAGAGAAATG
GAGAAAAGGATTTCCAGGAAGGGTCGAACTGCATATGCTTCTCTCGTTAGTTTGCATACA
AATCTACAGAGCAAGGATGAAGTTTTTCGAATATGGAAGGAGATGAAGTCACTCTTCCGT
AAAGTGAATGATACAGAATATAGTTGTATTATATCGTCGTTACTGAAGTTGGATGAATTT
GGAGAAGCAATGAATCTGTACACTGAATGGGAAGCTGGTTCTGTCACCAAGGATACTAGG
ATTGCAAATTTAATTCTTGCTGCTTACATTAACAGAAGTGAGATGGAAAATGCTGTTGAT
TTTCACAACAGAATGGCGCAGAAAGGCATAACTCCTAGCTGCACCACTTGGGAGCTTCTT
ACACGGGGTTATTTGAAGCAAAAGGAAATGGATAAAGTTCTCGAATTTTTCAAAAAAACT
GTCACTAGTGTTTCAAAATGGAATCCGGATGCAAAGATGGTTCGAAAGATGTTTCATGTA
GTTGAAGAGCAGGGCGACATTCAGATGGCAGAACAGTTACTAGTTACCCTTCGACATGCT
AAGTTTGTGAATACAGAGATCTATAATGCACTTCTCCGAACTTATGTGAATGCTGGTAAG
ATGCCAATGATAGTTACAGAGAGGATGAAAAAGGATAACGTGGAGATGGATGAGGAAACG
CGAAAATTAATTGGAATAACTAGCAAGATGACTGTAACTGAGGTTCCAAATGGGGTTGCT
TAA

Peptide Sequence

PEP ID

Solyc06g005140.3.1
PEP Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H877_POPTR)
Sequence

MLLRLIRRSYAAVRPLSTEASTTVKSTGSGGGSGITTSLEGGTSTRGRDTLGRRLLSLIY
AKRSAVIAIRKWKEEGHPVRKYELNRIVRELRRHKRYKHALEVCEWMRVQDDIELLSGDY
AVHLDLIAKVRGMNSAEKFFEDLPDKLKVQTTCTALLHTYVQHKDTSKAESLMEKMSECG
FLKYPLPYNHMLTLYISQGQLEKVPGLIQELKKNTSPDIVTYNLELAVFASQNNVEAAEK
AFLELKKAKLDPDWITFSTLTNIYIKSSLQDKAKSTLREMEKRISRKGRTAYASLVSLHT
NLQSKDEVFRIWKEMKSLFRKVNDTEYSCIISSLLKLDEFGEAMNLYTEWEAGSVTKDTR
IANLILAAYINRSEMENAVDFHNRMAQKGITPSCTTWELLTRGYLKQKEMDKVLEFFKKT
VTSVSKWNPDAKMVRKMFHVVEEQGDIQMAEQLLVTLRHAKFVNTEIYNALLRTYVNAGK
MPMIVTERMKKDNVEMDEETRKLIGITSKMTVTEVPNGVA*

Transcript Sequence

Transcript ID

Solyc06g005140.3.1
Transcript Infomation

Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H877_POPTR)
Sequence

TACTTTTAATTATAATTTTTTGATTAAAAGTTAGCAAAGGTAAATATCAAAAACAGAGAA
GAAAAAGGACAAAAATATTTAAATTTATTTTTCTTAAACCTTATTCTTTCATGGGCCAAG
TGGAAAACCCGAATTAAACACCAGAGGTTGAAGTGATAAACCCTAAACCCTAACTCTCTC
GCCGGCGAGTACATTGACGTTGCAAATCACTCGAACAGTAGGCAATACAAAGTGTGTCTG
TAATAAAAATGTTGCTCCGTTTGATTCGGAGATCTTATGCTGCTGTTCGCCCTCTATCGA
CTGAAGCTTCGACAACAGTTAAGTCCACAGGATCAGGAGGTGGAAGTGGCATTACCACTA
GCTTAGAAGGTGGCACTAGTACTCGTGGCAGAGACACACTAGGGAGGAGGCTTTTGAGTT
TGATCTATGCAAAACGTAGTGCTGTCATTGCTATACGCAAGTGGAAGGAAGAGGGGCACC
CTGTCCGGAAGTATGAGCTCAATCGCATTGTCCGGGAGTTGCGAAGACACAAACGATATA
AACACGCCCTTGAGGTTTGTGAATGGATGAGGGTACAAGATGATATCGAACTATTATCTG
GTGACTATGCAGTTCATTTGGATTTGATTGCAAAAGTTCGTGGTATGAACAGTGCAGAGA
AGTTTTTTGAAGACCTACCTGATAAACTGAAGGTCCAGACCACCTGTACTGCCCTTCTCC
ACACCTATGTCCAGCATAAGGACACTTCTAAAGCTGAGTCTTTGATGGAAAAAATGTCTG
AATGCGGGTTCTTGAAGTACCCTCTTCCTTATAATCATATGCTTACCTTATACATATCCC
AAGGGCAACTAGAAAAGGTTCCAGGCCTGATTCAGGAATTGAAGAAAAATACATCTCCTG
ATATTGTCACATACAATCTGGAGTTGGCAGTTTTTGCATCACAGAATAATGTTGAAGCTG
CGGAAAAAGCGTTCCTTGAGCTAAAGAAGGCAAAATTGGATCCTGACTGGATAACATTTA
GCACCTTAACCAACATCTACATTAAAAGCTCACTTCAGGATAAGGCAAAGTCAACTTTGA
GAGAAATGGAGAAAAGGATTTCCAGGAAGGGTCGAACTGCATATGCTTCTCTCGTTAGTT
TGCATACAAATCTACAGAGCAAGGATGAAGTTTTTCGAATATGGAAGGAGATGAAGTCAC
TCTTCCGTAAAGTGAATGATACAGAATATAGTTGTATTATATCGTCGTTACTGAAGTTGG
ATGAATTTGGAGAAGCAATGAATCTGTACACTGAATGGGAAGCTGGTTCTGTCACCAAGG
ATACTAGGATTGCAAATTTAATTCTTGCTGCTTACATTAACAGAAGTGAGATGGAAAATG
CTGTTGATTTTCACAACAGAATGGCGCAGAAAGGCATAACTCCTAGCTGCACCACTTGGG
AGCTTCTTACACGGGGTTATTTGAAGCAAAAGGAAATGGATAAAGTTCTCGAATTTTTCA
AAAAAACTGTCACTAGTGTTTCAAAATGGAATCCGGATGCAAAGATGGTTCGAAAGATGT
TTCATGTAGTTGAAGAGCAGGGCGACATTCAGATGGCAGAACAGTTACTAGTTACCCTTC
GACATGCTAAGTTTGTGAATACAGAGATCTATAATGCACTTCTCCGAACTTATGTGAATG
CTGGTAAGATGCCAATGATAGTTACAGAGAGGATGAAAAAGGATAACGTGGAGATGGATG
AGGAAACGCGAAAATTAATTGGAATAACTAGCAAGATGACTGTAACTGAGGTTCCAAATG
GGGTTGCTTAAGAACAAGGCTGGACTTTCAACTTTGTAAAATATTCAGATTATGCACAAG
AAACTTCTGTTTTGTAGCAATTACTATGCCTACCACAACAGCCACATGTTTTCTATTTAT
ATATCCATTGAACAGTTACTGTAATAGTTGATGTAGTGATTTCAGTTTTCGATTAGTCAA
TCAATGAAATACTCCTACTTCGATTAGATATTTTCTTTCTTAGTTATATTAATATGATGT
GTGAACTATCATTG