Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc06g005000.3.1
CDS Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G37560.1)
Sequence

ATGGAAGTTGACGACGATCTTCACGCCTTAGTCGACGAACAACGCCGTGAAATAGCAGCC
GCAGGTGACGGTGCCGTCGATGTCGACCTTCTCTTCGCTTTTCAACTCCAAATGCAAGAG
GCTATGAACGCTTCTACTTCAAAACCCGCCATTAATGCAAACGTTATCGTAGGTAATAAC
AATGTCAGTAATATCTTCCCTGACGAATTATCATACTACGAGCAACAACTTATAGACCAA
CTAACCGCTCAAGTTGAGATGAGGAAAATCGAAGACGACCTAAATCGTCGAATTCATGAC
CAGGCTTTTGCACGGGAGATACTCAATGTCCCGGATGGCGAGTGGAAATTAAACGAAGAT
CAATTACATAGGCCTTATGGGGAGGGATCGTCGTCCAATGGAGTGGATACGCAAAATGGG
GAGTGGTTTAGGGTTTATGTGAAGGGTTTGATGGGAGAAGATGCTGATGAAGATATAGTT
GGGGTTAATGTGGGGAGAGATATTGCTGGGATTGGAGTTGCTGTTTGTGATCCGAGTGAG
ATATTAGTGTTTGAAGTGAGTAAGGGTTTGGTTAAAGGTACTGAAGTATTGACGGATGAA
ATTGCAGAATTGAAAGCACTGATTGAAGGGCTTGATGTTGCTTTGATGCTGGGTTTGAAA
AGGGTTAATCTTCTTTTGGATAGTCAAACAATCTTGCAATATGTTAGCGGCACGTTGCAT
CCAAGGAAGGGTAATATTGTTGGACTTGTTGAACAGGCAACTTCTTGCCTAAAAAAATTT
ACAGATTGTATACCATCTCTTGTGACACAGAACACGATCAACTTGGCAATTAAACTTGCT
TCCGATGCAATAGTCTCTCAGGTTAGAGGACCAGCAGAAAATAGCCTTCGGAAGAGCATC
ACTGAAACTTGTACTATTTGTCTGCAAGATACTGATATAGATCATATGTTTCTAATTAAT
GGTTGCCTGCATTATTATTGCTATTCTTGTATGAATAAACATGTGGAAGCTAAGCTCCTT
CAAGGAATGCTACCTAAATGCCCTCATGATACATGCAAGTCTGAATTGAAATTAGATAAC
TGCAAAAAGTTCCTGATACCCAAGCTATATGATTTGATGAGTGAACGTGTAAAGGAAACT
ACCATTCCTATCACGGAAAAGATTTACTGCCCAAATCCCAAGTGTTCTACATTGATGTCA
AAAGCTGAGGTCTCTGCGGGAGAACAGCAAGCTGGGGTTACAATGTGCACGAAATGTCAC
CTTAATGTCTGTATCAACTGCAGAGTTCCTTGGCATAAAAACATGACTTGCTTTGACTAT
AGAAGACTTAACCCTTACTTGTGTGTAGAAGATGCAAATCTCAAGTCTCTTGCCGCACAG
AGTCGTTGGCGTCAGTGCGTAAAGTGCAACCACATGGTGTCTCTTGGCGAAGGTTGCTAT
CATATTTACTGCAGATGTGGTCACGAGTTCTGTGATACATGCGGAGCTGAGTGGAAGAAC
AAGAAAGCAACATGTTCCTGCCCAGTATGGGATGAGCGAAATATCATTTATGACAATAGA
CTCCAACCAAGGAGAGGCTGA

Peptide Sequence

PEP ID

Solyc06g005000.3.1
PEP Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G37560.1)
Sequence

MEVDDDLHALVDEQRREIAAAGDGAVDVDLLFAFQLQMQEAMNASTSKPAINANVIVGNN
NVSNIFPDELSYYEQQLIDQLTAQVEMRKIEDDLNRRIHDQAFAREILNVPDGEWKLNED
QLHRPYGEGSSSNGVDTQNGEWFRVYVKGLMGEDADEDIVGVNVGRDIAGIGVAVCDPSE
ILVFEVSKGLVKGTEVLTDEIAELKALIEGLDVALMLGLKRVNLLLDSQTILQYVSGTLH
PRKGNIVGLVEQATSCLKKFTDCIPSLVTQNTINLAIKLASDAIVSQVRGPAENSLRKSI
TETCTICLQDTDIDHMFLINGCLHYYCYSCMNKHVEAKLLQGMLPKCPHDTCKSELKLDN
CKKFLIPKLYDLMSERVKETTIPITEKIYCPNPKCSTLMSKAEVSAGEQQAGVTMCTKCH
LNVCINCRVPWHKNMTCFDYRRLNPYLCVEDANLKSLAAQSRWRQCVKCNHMVSLGEGCY
HIYCRCGHEFCDTCGAEWKNKKATCSCPVWDERNIIYDNRLQPRRG*

Transcript Sequence

Transcript ID

Solyc06g005000.3.1
Transcript Infomation

RING/U-box superfamily protein (AHRD V3.3 *** AT5G37560.1)
Sequence

CCATTTGAAGAATTAACTTGAGCTTTTGTATGTTCATGCTTTTTTTATTTAATGATAAAA
TAAGTTATTATAAAAAAAAACAAATAAGTAAAAAATTATTCATATGTACAAAATAAAAGG
TTAATTAAAGGATTCCATAAATAAATTGGTTTAAAAATTAATGAAAGAAAAAAAAATAAG
GAAAAAAGAGGAAAGAGCATAAACAAGAAAGAGAAATAGCCCTAAGAAAAAAATCAATTC
AAATAAAAAATAATAAAATAATGCCTCACACCAACAACAGAAGACCTCCATAACACACCT
ACAACACAAGACTCCATAACACTCCACAGTCCACACTGAAGTAAACTAGGGATGGAAGTT
GACGACGATCTTCACGCCTTAGTCGACGAACAACGCCGTGAAATAGCAGCCGCAGGTGAC
GGTGCCGTCGATGTCGACCTTCTCTTCGCTTTTCAACTCCAAATGCAAGAGGCTATGAAC
GCTTCTACTTCAAAACCCGCCATTAATGCAAACGTTATCGTAGGTAATAACAATGTCAGT
AATATCTTCCCTGACGAATTATCATACTACGAGCAACAACTTATAGACCAACTAACCGCT
CAAGTTGAGATGAGGAAAATCGAAGACGACCTAAATCGTCGAATTCATGACCAGGCTTTT
GCACGGGAGATACTCAATGTCCCGGATGGCGAGTGGAAATTAAACGAAGATCAATTACAT
AGGCCTTATGGGGAGGGATCGTCGTCCAATGGAGTGGATACGCAAAATGGGGAGTGGTTT
AGGGTTTATGTGAAGGGTTTGATGGGAGAAGATGCTGATGAAGATATAGTTGGGGTTAAT
GTGGGGAGAGATATTGCTGGGATTGGAGTTGCTGTTTGTGATCCGAGTGAGATATTAGTG
TTTGAAGTGAGTAAGGGTTTGGTTAAAGGTACTGAAGTATTGACGGATGAAATTGCAGAA
TTGAAAGCACTGATTGAAGGGCTTGATGTTGCTTTGATGCTGGGTTTGAAAAGGGTTAAT
CTTCTTTTGGATAGTCAAACAATCTTGCAATATGTTAGCGGCACGTTGCATCCAAGGAAG
GGTAATATTGTTGGACTTGTTGAACAGGCAACTTCTTGCCTAAAAAAATTTACAGATTGT
ATACCATCTCTTGTGACACAGAACACGATCAACTTGGCAATTAAACTTGCTTCCGATGCA
ATAGTCTCTCAGGTTAGAGGACCAGCAGAAAATAGCCTTCGGAAGAGCATCACTGAAACT
TGTACTATTTGTCTGCAAGATACTGATATAGATCATATGTTTCTAATTAATGGTTGCCTG
CATTATTATTGCTATTCTTGTATGAATAAACATGTGGAAGCTAAGCTCCTTCAAGGAATG
CTACCTAAATGCCCTCATGATACATGCAAGTCTGAATTGAAATTAGATAACTGCAAAAAG
TTCCTGATACCCAAGCTATATGATTTGATGAGTGAACGTGTAAAGGAAACTACCATTCCT
ATCACGGAAAAGATTTACTGCCCAAATCCCAAGTGTTCTACATTGATGTCAAAAGCTGAG
GTCTCTGCGGGAGAACAGCAAGCTGGGGTTACAATGTGCACGAAATGTCACCTTAATGTC
TGTATCAACTGCAGAGTTCCTTGGCATAAAAACATGACTTGCTTTGACTATAGAAGACTT
AACCCTTACTTGTGTGTAGAAGATGCAAATCTCAAGTCTCTTGCCGCACAGAGTCGTTGG
CGTCAGTGCGTAAAGTGCAACCACATGGTGTCTCTTGGCGAAGGTTGCTATCATATTTAC
TGCAGATGTGGTCACGAGTTCTGTGATACATGCGGAGCTGAGTGGAAGAACAAGAAAGCA
ACATGTTCCTGCCCAGTATGGGATGAGCGAAATATCATTTATGACAATAGACTCCAACCA
AGGAGAGGCTGA