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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g056500.1.1
CDS Infomation

U-box domain-containing protein 25 (AHRD V3.3 *** W9QUC2_9ROSA)
Sequence

ATGAAGGAGCCTGAAGTTGGAATTCCCATCTTGTTTAGGTGTCCAATAAGTTTAGATTTG
TTTAAAGATCCAGTTACTTTATGCACAGGCCAAACATATGACAGATCCAGTATTGAGAAA
TGGTTATCTTGTGGGAATTTAACTTGTCCTGTTACAATGCAAAAGCTTCATGACTCTACT
ATTGTACCAAACACCACTCTTCGCCATTTGATCGATCGATGGCTTCAAATAAACTCTAGT
CATGGTTATGATCTTGATTACTTTCAAACAGTTGATGATTCATTTGTTGTTCTTAAACAC
AATCTTCAGTCAAAGGAGTCTACATTGGAATCAAAAGTTGAAGCATTAGATAAAGTTCTT
GCTTTATCGAAAGATCTGCCTTTCGAAAACTGTCCCCTGATTCAACTAGATTTCTTCCAA
ATGATTCTTGAATTAGCCTTGAACGATGCAGATGAAAGATCAAGTTTTGAAGAAAATGTC
ATGTTTGTGGAGAAAGCATTAGTTTGTGGATTGAAGTTGTTGCCATTTAGTGACTTGGGA
ACACTCAACATGCTTAAACAAGATGAATCAAAGTTTACAATTCTGTTCAAGAAAGGGAGT
TTTATGATCAAGAAAAGCTTGTGTCATTACATAGTGGCAATTTCATCATCTTTGCAATTG
AAGGAACTTTTAGTTATGTTTGGTAAATCCAAGATTCTTGTTCAAGAACTTGTTCATCTT
ATTGAGAACAAACTAGATGGTTATGAAGAATCAATCAAAGCACTTTCAGCATTATCTTCT
GTTGAGCAGAATCGCGAAGTAATAGCAAAAGAAAATGCAGTTAAGGCATTGATAACATAC
ATTGTGAATGCTCCAAAGTGTGAATATAGAAGCTTGTTTGGACTTGTTATGGCAATGAAA
ACAATTGAGGCATTGCTAGTTGTAGAAAGTGCAATAGAGGATGTTTTGGATCATCCAAAT
GGGGTTAGTGAAATTGTGAAGATGGTATTTAGAGTTTCATCAGATAATGAAGCAAGTGAA
AGTGCAATGAATTGTTTAATCATTTTGTGTCAAGATTTCATCAATGCTAGGGAAGAAGCT
ATTTGTTCTGGAATTTTGACTAAGTTGTTGTTACTACTTCAAAGCCAATGTAGTGAAAGG
ACCAAAAATAAGGCTAGAATGTTGCTCAAATTGTTGAGATCTATGTGCAATGGGGATACA
AAATGA

Peptide Sequence

PEP ID

Solyc05g056500.1.1
PEP Infomation

U-box domain-containing protein 25 (AHRD V3.3 *** W9QUC2_9ROSA)
Sequence

MKEPEVGIPILFRCPISLDLFKDPVTLCTGQTYDRSSIEKWLSCGNLTCPVTMQKLHDST
IVPNTTLRHLIDRWLQINSSHGYDLDYFQTVDDSFVVLKHNLQSKESTLESKVEALDKVL
ALSKDLPFENCPLIQLDFFQMILELALNDADERSSFEENVMFVEKALVCGLKLLPFSDLG
TLNMLKQDESKFTILFKKGSFMIKKSLCHYIVAISSSLQLKELLVMFGKSKILVQELVHL
IENKLDGYEESIKALSALSSVEQNREVIAKENAVKALITYIVNAPKCEYRSLFGLVMAMK
TIEALLVVESAIEDVLDHPNGVSEIVKMVFRVSSDNEASESAMNCLIILCQDFINAREEA
ICSGILTKLLLLLQSQCSERTKNKARMLLKLLRSMCNGDTK*

Transcript Sequence

Transcript ID

Solyc05g056500.1.1
Transcript Infomation

U-box domain-containing protein 25 (AHRD V3.3 *** W9QUC2_9ROSA)
Sequence

ATGAAGGAGCCTGAAGTTGGAATTCCCATCTTGTTTAGGTGTCCAATAAGTTTAGATTTG
TTTAAAGATCCAGTTACTTTATGCACAGGCCAAACATATGACAGATCCAGTATTGAGAAA
TGGTTATCTTGTGGGAATTTAACTTGTCCTGTTACAATGCAAAAGCTTCATGACTCTACT
ATTGTACCAAACACCACTCTTCGCCATTTGATCGATCGATGGCTTCAAATAAACTCTAGT
CATGGTTATGATCTTGATTACTTTCAAACAGTTGATGATTCATTTGTTGTTCTTAAACAC
AATCTTCAGTCAAAGGAGTCTACATTGGAATCAAAAGTTGAAGCATTAGATAAAGTTCTT
GCTTTATCGAAAGATCTGCCTTTCGAAAACTGTCCCCTGATTCAACTAGATTTCTTCCAA
ATGATTCTTGAATTAGCCTTGAACGATGCAGATGAAAGATCAAGTTTTGAAGAAAATGTC
ATGTTTGTGGAGAAAGCATTAGTTTGTGGATTGAAGTTGTTGCCATTTAGTGACTTGGGA
ACACTCAACATGCTTAAACAAGATGAATCAAAGTTTACAATTCTGTTCAAGAAAGGGAGT
TTTATGATCAAGAAAAGCTTGTGTCATTACATAGTGGCAATTTCATCATCTTTGCAATTG
AAGGAACTTTTAGTTATGTTTGGTAAATCCAAGATTCTTGTTCAAGAACTTGTTCATCTT
ATTGAGAACAAACTAGATGGTTATGAAGAATCAATCAAAGCACTTTCAGCATTATCTTCT
GTTGAGCAGAATCGCGAAGTAATAGCAAAAGAAAATGCAGTTAAGGCATTGATAACATAC
ATTGTGAATGCTCCAAAGTGTGAATATAGAAGCTTGTTTGGACTTGTTATGGCAATGAAA
ACAATTGAGGCATTGCTAGTTGTAGAAAGTGCAATAGAGGATGTTTTGGATCATCCAAAT
GGGGTTAGTGAAATTGTGAAGATGGTATTTAGAGTTTCATCAGATAATGAAGCAAGTGAA
AGTGCAATGAATTGTTTAATCATTTTGTGTCAAGATTTCATCAATGCTAGGGAAGAAGCT
ATTTGTTCTGGAATTTTGACTAAGTTGTTGTTACTACTTCAAAGCCAATGTAGTGAAAGG
ACCAAAAATAAGGCTAGAATGTTGCTCAAATTGTTGAGATCTATGTGCAATGGGGATACA
AAATGA