Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g056320.3.1
CDS Infomation

smr (Small MutS Related) domain-containing protein (AHRD V3.3 *** AT5G23520.2)
Sequence

ATGGCTGCTTCTACGAGTGTGACAAGTCCTCTACATAAGAAGATGTCTGGGAGGAGGGCT
AAGACTTCTGGTTGGGCTGCATTTGACCTCAATGAGAGACTGAAGCAACAAAATCTTGAG
CCAGAGCCTGAGAGAGAAACCTTCCCCAACTTATCCGTTCCGCCCACTTCCTTAAGGGGT
CCATCTCAAAGCATCGCAAAGAACAGTGGAGCAACTCTAGAGAAGCCTTTTTCATCCTTG
CTGCTACCGTCTGTAAGTTTTCCATCGTTAATGGCTACTAAAGAGTCTGATGCAAATCAT
AGTCAAGTTGGCGATTCTTGTTTCAACCAGACTGATGGTTTTATCCGAGAAAGAGGTTTT
CTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCAGCCATGGGCTGATGACACCTTGATCGCA
GATGTCTTGGCTGGTGTAAATGATTTCAATAAGGCCTTGACATTGTTGGATGCAATGGTA
TCTCCTGATCATACATATGTTGCACATGACAACAGAACAACTCCAGAAGAAGCAGATACT
CCCTACATACAAAACCTTAAAGACGTAGACACAGATACTAAAGGGGTCAAGTCTAGTAGT
AAGAATTCTCTCATGAATATTAACAAGTTTGCTGCTAATAAAGGTGTGTCATTGACAGAC
AATGTGGATATGGATGAATTGAGCCATGCACTTGCCAAGTGTCTTCAGAGCAACAGTCAG
GAACTAATAAATAACTGTGTTTCTCACGAGAACAAACTTCATTTTGATGGAGCAGTGGGG
AGTATGAGCTTTGTACCGGTTGAGCCTGAGTGGGAAGAGGATGATATTTACTCGATCCAT
CGGAAGGATGCAGTGAAGATGACGAGGTCGGCAGCCCGACATTCTAAGGCTGCCAGTGAG
GCCTATCTCAGAGGAGACCACTTATCTGCCCAACATTTTTCTCTAAAAGCCCAAGAAGAG
TGGGATGCTGCTAATAGGCTAAATGCCCAGGCTGCAAAAGAAATTTTGACTGCCTGCAAC
GGTAAGAATGATCAATGGACACTGGACTTGCATGGTCTTCATGCAAAAGAGGCAGTTCAA
GCCTTACAAGAACATTTGCAAAAGATTGAATCTCAGGTGGCACAGAATAAGCGCAGCTTT
GGAGCTGCTGTCTCTTTTGATGTGGAGAATGAGAGCAAAGGGTCCCACCTATTGAATAAG
CAGCGGCCAGCTTTCTTAGAGGTCATAACAGGTAAAGGTATTCATAGCCGGGGACAAGCT
GCACTTCCAATGGCTATAAGAAGCTTTCTCGTGGAGAAGGGATATCGTTATGAGGAGACA
AGGCCCGGGGTGATCACAGTTAGACCCAAGTTCCGACCACGATAA

Peptide Sequence

PEP ID

Solyc05g056320.3.1
PEP Infomation

smr (Small MutS Related) domain-containing protein (AHRD V3.3 *** AT5G23520.2)
Sequence

MAASTSVTSPLHKKMSGRRAKTSGWAAFDLNERLKQQNLEPEPERETFPNLSVPPTSLRG
PSQSIAKNSGATLEKPFSSLLLPSVSFPSLMATKESDANHSQVGDSCFNQTDGFIRERGF
LEVCRKLKELQPWADDTLIADVLAGVNDFNKALTLLDAMVSPDHTYVAHDNRTTPEEADT
PYIQNLKDVDTDTKGVKSSSKNSLMNINKFAANKGVSLTDNVDMDELSHALAKCLQSNSQ
ELINNCVSHENKLHFDGAVGSMSFVPVEPEWEEDDIYSIHRKDAVKMTRSAARHSKAASE
AYLRGDHLSAQHFSLKAQEEWDAANRLNAQAAKEILTACNGKNDQWTLDLHGLHAKEAVQ
ALQEHLQKIESQVAQNKRSFGAAVSFDVENESKGSHLLNKQRPAFLEVITGKGIHSRGQA
ALPMAIRSFLVEKGYRYEETRPGVITVRPKFRPR*

Transcript Sequence

Transcript ID

Solyc05g056320.3.1
Transcript Infomation

smr (Small MutS Related) domain-containing protein (AHRD V3.3 *** AT5G23520.2)
Sequence

TGAAGGGAATACTTGATATTTTCCTAAAGTTAAGCTAAAGTTTGGATTCTTACTGCTAAA
AAAAAGGTTGGATGTTTACTGTTTCTGAATGATTGCTAAGGAACTGAAGTCCTTAGAGAT
TTGAAATCTTACTGTAGGTGGTTATTGAAGGACATGAAAGTTTTGAACAGGAATACAAAA
TTGATTGTAGTTCTCCTAAAAGTGAGCTAAAGGTTGGATTTTTACTACTTTCAAAAAAAA
AAAGTAGAAAGGTAGAGATGGTTGGATTTTCAGCTTCTAAGTGATGCAAACATTTTGTGT
CGTTAAAAATTTTAATTTTACTGAAGGTGATTGTAGGAGGACATGAAGATTTCGAACAGG
AATATTGTTAATGTAGTTTTCGTAAATTTGTAGCTAAAGGTTGGATTTTACAGCTTCTTA
GTGATACAAAGGTTTTGAGATGGTTAGAAAATTAAACTTTACTGAAGGTGATTATTGTAC
GGCATCAAGATTTTGAACAGAAATACATGTTAATTATGGTTTTCCTAAATTTTTAGCTTA
ACGTTGGATTTTCTGCTTCTGAATGCTGCAATAAGTTTGAAAATGTAGAAAGTTCATGTT
TTTACTAAAATTATTGTAGGAGATAAGCTTTGTAAAAATTGTTTTTTACTTTTATGTACA
AGTGGAGAGGTAGATACCATACAATGTTTTAAAGGAAAAAAAAAAGTAGACTGATCTAAA
GTGGAGAGCTTATGATAGTTGGTGGTTTGGAATGAACCTTCATAGTTAAACATCATTTTT
CAACCAGCCTTATTGCTTGTATTATCTTTCATTTGAAATTTGATGGTGGGATTTTTGTGC
AGTTTACTCTTTCAGTAAAGCTGTCATTGTTTTAATAATCCGGAGCCAAAACTTAAACTT
GAATTAAGGAGACACTAATTAAATTATAGCCAAGAAGAGGTGGTGGTGTGGCTTGAAATG
ATTTAAGTGCTTTCAATGTCAACTTAAGATGGCTGCTTCTACGAGTGTGACAAGTCCTCT
ACATAAGAAGATGTCTGGGAGGAGGGCTAAGACTTCTGGTTGGGCTGCATTTGACCTCAA
TGAGAGACTGAAGCAACAAAATCTTGAGCCAGAGCCTGAGAGAGAAACCTTCCCCAACTT
ATCCGTTCCGCCCACTTCCTTAAGGGGTCCATCTCAAAGCATCGCAAAGAACAGTGGAGC
AACTCTAGAGAAGCCTTTTTCATCCTTGCTGCTACCGTCTGTAAGTTTTCCATCGTTAAT
GGCTACTAAAGAGTCTGATGCAAATCATAGTCAAGTTGGCGATTCTTGTTTCAACCAGAC
TGATGGTTTTATCCGAGAAAGAGGTTTTCTAGAGGTGTGTCGAAAGCTGAAAGAGCTCCA
GCCATGGGCTGATGACACCTTGATCGCAGATGTCTTGGCTGGTGTAAATGATTTCAATAA
GGCCTTGACATTGTTGGATGCAATGGTATCTCCTGATCATACATATGTTGCACATGACAA
CAGAACAACTCCAGAAGAAGCAGATACTCCCTACATACAAAACCTTAAAGACGTAGACAC
AGATACTAAAGGGGTCAAGTCTAGTAGTAAGAATTCTCTCATGAATATTAACAAGTTTGC
TGCTAATAAAGGTGTGTCATTGACAGACAATGTGGATATGGATGAATTGAGCCATGCACT
TGCCAAGTGTCTTCAGAGCAACAGTCAGGAACTAATAAATAACTGTGTTTCTCACGAGAA
CAAACTTCATTTTGATGGAGCAGTGGGGAGTATGAGCTTTGTACCGGTTGAGCCTGAGTG
GGAAGAGGATGATATTTACTCGATCCATCGGAAGGATGCAGTGAAGATGACGAGGTCGGC
AGCCCGACATTCTAAGGCTGCCAGTGAGGCCTATCTCAGAGGAGACCACTTATCTGCCCA
ACATTTTTCTCTAAAAGCCCAAGAAGAGTGGGATGCTGCTAATAGGCTAAATGCCCAGGC
TGCAAAAGAAATTTTGACTGCCTGCAACGGTAAGAATGATCAATGGACACTGGACTTGCA
TGGTCTTCATGCAAAAGAGGCAGTTCAAGCCTTACAAGAACATTTGCAAAAGATTGAATC
TCAGGTGGCACAGAATAAGCGCAGCTTTGGAGCTGCTGTCTCTTTTGATGTGGAGAATGA
GAGCAAAGGGTCCCACCTATTGAATAAGCAGCGGCCAGCTTTCTTAGAGGTCATAACAGG
TAAAGGTATTCATAGCCGGGGACAAGCTGCACTTCCAATGGCTATAAGAAGCTTTCTCGT
GGAGAAGGGATATCGTTATGAGGAGACAAGGCCCGGGGTGATCACAGTTAGACCCAAGTT
CCGACCACGATAAATACGTTCATATGTATATTTTGGGTCCCAATTTAGTGCATTTGTTTC
TGTTGCTATCAACTTTGACCTAGAGATTTTGAGTCTTGAACTGGTCTTATAAAAACGACC
AGAAACCTGTTGTGGTTATATACTGTTGAATATTTCTGTAATTGCATACCATCAAACATT
GTATGTACTTTGCTGATTTCTCCACAGGTCCAAACTAACACTTGAAAGTATATTGGAGGT
AGCTTGGTCAAGTGTCTCAAATTACTATTCACGGTGAATTTTATATGTATAACCGGCAGT
TGAAGTCACCATACTCTTTATGACACACCTTTGCAAGTGACT