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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g056150.3.1
CDS Infomation

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (AHRD V3.3 *** W9RG35_9ROSA)
Sequence

ATGCAAACTTCAGCCTCATCACTACATAACTTATTCTTGGGGAAGAATCTCAGCTATGCA
CCACCATATACACTTAGCAGAGCGCTGGATTTCATACCTGCTATGGCATCGTCTTCAGTA
GGACCTCAAAGGCTATCCGTACAATGTGGAGTTGGGTTCCGCCCTTGCATTGACATACAC
AAGGGAAAAGTGAAGCAAATTGTTGGATCAACTCTTCGAGATTCTAAGGAGGCAGATACA
AGCCTGGTAACTAACTTTGAATCTGATAAATCGGCTGCAGAATATGCAAAGCTTTACAGA
GATGACGGCCTTGATGGTGGCCATGTGATTATGCTTGGTGCTGACCCCTTGAGCATAGCT
GCTGCTACTGAAGCATTACATGCTTACCCTGGTAGGGTGAAACATCTAGGTGGGTTGCAA
GTTGGAGGGGGAATCAAAACTGAAAATGCTTTGAGTTACATTGAAGAAGGAGCCAGCCAT
GTCATTGTCACATCGTATGTCTTTAACAATGGACAAATGGACCTTGAGAGACTGAAAGAA
CTTTCTTCCCTCGTTGGAAGAAAGAGGCTTGTTTTGGATCTTAGTTGCCGTAAAAAGGAG
GGTGAGTATGTCATTGTCACAGACAGGTGGCAGAAGTTCAGTGATGTACATCTCAATGAG
AAAGTCCTGAATTTTCTTGCGGAGTACGCTGATGAGTTTCTGGTTCATGGTGTTGATGTT
GAAGGCAAAAAGCTGGGAATAGATGAGGAGCTTGTAGCATTGCTTGGAAAGTATTCCCCC
ATTCCTGTAACATATGCTGGTGGTGTCACTGGGATGGCTGATCTTGAGAAGATCAAAGTC
GCGGGGATGGGGCGTGTGGATGTGACAGTGGGCAGCGCGTTGGATATTTTCGGAGGTAAC
TTGGCATACAAAGATGTTGTGGCTTGGCATGCTCTACAAGATTCTCTTGCAGTTTAA

Peptide Sequence

PEP ID

Solyc05g056150.3.1
PEP Infomation

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (AHRD V3.3 *** W9RG35_9ROSA)
Sequence

MQTSASSLHNLFLGKNLSYAPPYTLSRALDFIPAMASSSVGPQRLSVQCGVGFRPCIDIH
KGKVKQIVGSTLRDSKEADTSLVTNFESDKSAAEYAKLYRDDGLDGGHVIMLGADPLSIA
AATEALHAYPGRVKHLGGLQVGGGIKTENALSYIEEGASHVIVTSYVFNNGQMDLERLKE
LSSLVGRKRLVLDLSCRKKEGEYVIVTDRWQKFSDVHLNEKVLNFLAEYADEFLVHGVDV
EGKKLGIDEELVALLGKYSPIPVTYAGGVTGMADLEKIKVAGMGRVDVTVGSALDIFGGN
LAYKDVVAWHALQDSLAV*

Transcript Sequence

Transcript ID

Solyc05g056150.3.1
Transcript Infomation

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (AHRD V3.3 *** W9RG35_9ROSA)
Sequence

ATTATCTCTGCAGGGTTATCGGAAACAGACTTCCTAAGGTTATCCTTTTCCTTTTAGGCT
CCACTCGTGGGATTACAAAAGATATGTTGTTCGTGGGATTACAAAAGATATGTTGTGATA
ATGTTAAATTATGGAGTTTAGCATAAACTCTAGGTGCAGCCTACAGGCAGCAATTGAACA
AGTGATAATTGGAGCTGCACGACTGACGAAACGACCGCTACCGGCGACGGCGAACGGCGA
ACCGCTCATTGAAGTTATTTTTTTGTTTCATCAGATCTGATTATCTCTTTTATAAACATT
TGATTTAAGCTAAGTTGATTTCGACAATGCAAACTTCAGCCTCATCACTACATAACTTAT
TCTTGGGGAAGAATCTCAGCTATGCACCACCATATACACTTAGCAGAGCGCTGGATTTCA
TACCTGCTATGGCATCGTCTTCAGTAGGACCTCAAAGGCTATCCGTACAATGTGGAGTTG
GGTTCCGCCCTTGCATTGACATACACAAGGGAAAAGTGAAGCAAATTGTTGGATCAACTC
TTCGAGATTCTAAGGAGGCAGATACAAGCCTGGTAACTAACTTTGAATCTGATAAATCGG
CTGCAGAATATGCAAAGCTTTACAGAGATGACGGCCTTGATGGTGGCCATGTGATTATGC
TTGGTGCTGACCCCTTGAGCATAGCTGCTGCTACTGAAGCATTACATGCTTACCCTGGTA
GGGTGAAACATCTAGGTGGGTTGCAAGTTGGAGGGGGAATCAAAACTGAAAATGCTTTGA
GTTACATTGAAGAAGGAGCCAGCCATGTCATTGTCACATCGTATGTCTTTAACAATGGAC
AAATGGACCTTGAGAGACTGAAAGAACTTTCTTCCCTCGTTGGAAGAAAGAGGCTTGTTT
TGGATCTTAGTTGCCGTAAAAAGGAGGGTGAGTATGTCATTGTCACAGACAGGTGGCAGA
AGTTCAGTGATGTACATCTCAATGAGAAAGTCCTGAATTTTCTTGCGGAGTACGCTGATG
AGTTTCTGGTTCATGGTGTTGATGTTGAAGGCAAAAAGCTGGGAATAGATGAGGAGCTTG
TAGCATTGCTTGGAAAGTATTCCCCCATTCCTGTAACATATGCTGGTGGTGTCACTGGGA
TGGCTGATCTTGAGAAGATCAAAGTCGCGGGGATGGGGCGTGTGGATGTGACAGTGGGCA
GCGCGTTGGATATTTTCGGAGGTAACTTGGCATACAAAGATGTTGTGGCTTGGCATGCTC
TACAAGATTCTCTTGCAGTTTAAGTCATTCTTAACTTCCCATTGTTTGTTCAAGTTTTTT
GAATCATAGCTGGAGTAATGTTCAGATGTTACATGAATCTTGACCTCAGATTCATTTTGC
CTAGACTTTCGCGTAGTTTCACCACCTATTTTATGAGATTTTCTATTTAACATCTTGATG
TTAGTTGTATAAGCGTCA