Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g056140.3.1
CDS Infomation

Zinc finger (C3HC4-type RING finger) family protein (AHRD V3.3 *** A0A061FV73_THECC)
Sequence

ATGGTAAGCAAATGGGGGAAAGTGAAATTGGCTCTTGGTTTGAATCTTTGTACTTATGTT
CCTAAAAAGACACTGGATGAAAATGATGATAGTGGTAGTTCAACAGTTTCTGAATCAGAG
AGGCATTCCGGCGCCGCCCTTATAACGCCGGCGACGGCTGACTGGGATGTTGCTCCGGCG
ACACCAAGGTCACAAGTGTTGAAGCTTTCCAAGAGCTTAAGTAGATCTTCTAAGAAAACA
TGCTCAATTTGTTTGGCTTCAATGAAGAGAGGGGATGGCCATGCTATATTCACTGCTGAA
TGTTCACATTCGTTTCACTTCCAGTGTATTGCTTCAAACGTGAAACATGGAAACCAAGTT
TGCCCAGTTTGCAGGGCAGAATGGAAAGAAATTCCTCTGCAGTTTCCCAGCTTAGATCCT
CCTATTGGAAGGGCTAGAGTCAATCCTGTGGACTGGCCCCAAAATAATGCACTAATGACT
GTAATACGTCGTTTACCAACAACCCGCCCAACACCAAATCGGCATATTTCCCCACTATTT
CAGGCTCCTGAGCCAGCCATCTTTGATGATGATGATGAATCTTTGGGTCATCAACTCAAT
TCTACAGAGAAAAGTGCTTCTGATAAGAGTTCAATAGATGGTTGTGAGTCTTGTGACAAC
AGAAAAGTAAAGATTGAAACTTACCCTGAGGTTCCCGCAGTCTCAAGGTCCAGTGCTTCA
GCTAACTTTACTGTGTTAGTCCAGCTGAAGGCTCCTGGTTCATTCTCAGTACAAGAACCA
GGCAAAACCCAGGTAAATTTGTCTCAGGTTTCCCAAACGCCTCGTGCTCCTGTTGACCTT
GTCACAGTTCTTGACATCAGTGGAAGTATGGCTGGCACCAAACTAGCGTTACTAAAACGA
GCTATGGGTTTTGTGATACAGAATCTCGGTCCCAATGATAGACTGGCAGTAATTGCCTTC
TCTTCGACTGCTCGCCGCCTCTTCCCTCTTCGTAGGATGTCTGAGACAGGACGGCAGCAA
GCACTGCAAGCTGTAAACTCCCTGGTTGCAAATGGAGGGACAAATATTGCTGAAGGCTTG
AGAAAGGGCGCCAAGATAATGGAAGACCGCAAGGAAAAGAACTCGGTTACTAGTATAATA
CTGTTGTCTGATGGTCAAGACACATACACAGTCAGTAATAATTCTGGTAGTAGACAGCAG
CAACCTAACTACAAGCTGCTTCTACCCTTGTCCATTCATGGTGGAAATAGTTCAGGGTTT
AAAATACCAGTACATGCTTTCGGGTTTGGTAATGATCACGATGCTTCGTCAATGCATTCA
ATATCAGAGATTTCAGGAGGAACATTTTCATTTATTGAGACAGAAGGTGTCATACAGGAT
GCTTTTGCACAGTGCATTGGAGGCCTTCTCAGTGTTGTAGTCAAGGAGCTTCAGGTAAGC
ATTGAGTGTCTTCACCCAGGTGTCTGTCTTAGCTCTTTAAAAGCAGGAAGCTATCCAAAC
CGCTTAATGTCTGATGGACACATGGGAACAATTGATGTTGGAGATCTATATGCTGATGAA
GAGAGGGATTTTCTGGTTTCAATCAATATCCCTACTGAATCTTCAGGTGCAGAAACATCA
TTGTTAAAGGTTAAGTGTGTATATGTGGATCCCTTCACGAAAGAGAAGGTTTCCATCAGA
AGTGAAGATCTAAGTATCAAGAGACCTGAAAAGGCTGGACAAGAGAGTGTTTTGATTGAA
GTAGACAGGCAGCAGAACAGGGTCCGAGTGGCCGAGGCAATGGCACAGGCACGAGCTGCT
GCTGAGAAAGGAGACCTAGTTGGCGCGACTTCCATCCTAGAGAACTCCAGAAAGTTGTTG
TCAGAGTCACAGTCTGCTAAATCTCATGACCGGCTTTGTGTTGCACTTGATGCTGAGCTC
AAGGAGATGCAGGAGAGGATGGCAAGCAGAAATGTATACGAAGCATCAGGAAGGGCATAT
ATCTTGTCAGGGCTGAGCTCACACTCGTGGCAGAGAGCAACAGCACGAGGTGACTCCACA
GGTGGATCAAGTCTTGTCCAAGCCTATCAAACCCCTTCCATGGCTGAGATGGTAACTCGA
TCTCAGGCTACATTACTGTCTAGCCCTTCAGCTCAAAGACATGTTCGACCAGTGTGGTCA
TTTGCATCACAACCAAAGCCTAGGTAA

Peptide Sequence

PEP ID

Solyc05g056140.3.1
PEP Infomation

Zinc finger (C3HC4-type RING finger) family protein (AHRD V3.3 *** A0A061FV73_THECC)
Sequence

MVSKWGKVKLALGLNLCTYVPKKTLDENDDSGSSTVSESERHSGAALITPATADWDVAPA
TPRSQVLKLSKSLSRSSKKTCSICLASMKRGDGHAIFTAECSHSFHFQCIASNVKHGNQV
CPVCRAEWKEIPLQFPSLDPPIGRARVNPVDWPQNNALMTVIRRLPTTRPTPNRHISPLF
QAPEPAIFDDDDESLGHQLNSTEKSASDKSSIDGCESCDNRKVKIETYPEVPAVSRSSAS
ANFTVLVQLKAPGSFSVQEPGKTQVNLSQVSQTPRAPVDLVTVLDISGSMAGTKLALLKR
AMGFVIQNLGPNDRLAVIAFSSTARRLFPLRRMSETGRQQALQAVNSLVANGGTNIAEGL
RKGAKIMEDRKEKNSVTSIILLSDGQDTYTVSNNSGSRQQQPNYKLLLPLSIHGGNSSGF
KIPVHAFGFGNDHDASSMHSISEISGGTFSFIETEGVIQDAFAQCIGGLLSVVVKELQVS
IECLHPGVCLSSLKAGSYPNRLMSDGHMGTIDVGDLYADEERDFLVSINIPTESSGAETS
LLKVKCVYVDPFTKEKVSIRSEDLSIKRPEKAGQESVLIEVDRQQNRVRVAEAMAQARAA
AEKGDLVGATSILENSRKLLSESQSAKSHDRLCVALDAELKEMQERMASRNVYEASGRAY
ILSGLSSHSWQRATARGDSTGGSSLVQAYQTPSMAEMVTRSQATLLSSPSAQRHVRPVWS
FASQPKPR*

Transcript Sequence

Transcript ID

Solyc05g056140.3.1
Transcript Infomation

Zinc finger (C3HC4-type RING finger) family protein (AHRD V3.3 *** A0A061FV73_THECC)
Sequence

TTAGGACTTGGGTTTCCTATCTGGTATTCAATGTTTATACTGAAGCTTAACTATTTTTGA
ATTCGCAATACGTAAACACGCTCTACCATGAATATTTTAGATAACTAAAACATCTAATAA
AGAAAGGAGCAACCTCATCCGCTATACCACAGTCATACATTTTTACAAATCTCAATAAAC
CAAAGTCAATAAAACCAACCACAAACATCTACAAAAAGAAAAAAAAATACAATCAAAGAG
GTCAGCTCTGTGGTCCTTTATTGATTCTTCAACCAAAAATTTCACCTTATTAATCTCCAT
ATTACTCCTCCTTCCCTTCACTCTCTCATTTCCCCATTCCCCAATCCTTGTTGCATAACA
CAAAGAAAAAAAAAATTTTGGGGCAAAATGCTTCTTCTTAATCACCCCTCTATGACTCTT
TCTTCTTAAACCATCTTCTATTTGCTCCTCATTTCACATGTTTCTTGGTTTTTGTGCCTC
ACTTTCTCTTCTGTAGCTCCAATAACCAAAAGGGTTTAAAGAACTCAGCTGCATTTCTGG
AAAAAATCTGTCTTTTTTAAGTCAAAGCTAGCAGAATAATAGTAACAAAAGGAAGTGATA
AAGGGGGATTTTTTTTTCCTTTTTTGTTTTAAAGGGTAGGTGATTCTTGAAATCTTTTGA
TAAGGGGTTTGAGAAATTGTTACTTTTAAAAAAAAAAATGGTAAGCAAATGGGGGAAAGT
GAAATTGGCTCTTGGTTTGAATCTTTGTACTTATGTTCCTAAAAAGACACTGGATGAAAA
TGATGATAGTGGTAGTTCAACAGTTTCTGAATCAGAGAGGCATTCCGGCGCCGCCCTTAT
AACGCCGGCGACGGCTGACTGGGATGTTGCTCCGGCGACACCAAGGTCACAAGTGTTGAA
GCTTTCCAAGAGCTTAAGTAGATCTTCTAAGAAAACATGCTCAATTTGTTTGGCTTCAAT
GAAGAGAGGGGATGGCCATGCTATATTCACTGCTGAATGTTCACATTCGTTTCACTTCCA
GTGTATTGCTTCAAACGTGAAACATGGAAACCAAGTTTGCCCAGTTTGCAGGGCAGAATG
GAAAGAAATTCCTCTGCAGTTTCCCAGCTTAGATCCTCCTATTGGAAGGGCTAGAGTCAA
TCCTGTGGACTGGCCCCAAAATAATGCACTAATGACTGTAATACGTCGTTTACCAACAAC
CCGCCCAACACCAAATCGGCATATTTCCCCACTATTTCAGGCTCCTGAGCCAGCCATCTT
TGATGATGATGATGAATCTTTGGGTCATCAACTCAATTCTACAGAGAAAAGTGCTTCTGA
TAAGAGTTCAATAGATGGTTGTGAGTCTTGTGACAACAGAAAAGTAAAGATTGAAACTTA
CCCTGAGGTTCCCGCAGTCTCAAGGTCCAGTGCTTCAGCTAACTTTACTGTGTTAGTCCA
GCTGAAGGCTCCTGGTTCATTCTCAGTACAAGAACCAGGCAAAACCCAGGTAAATTTGTC
TCAGGTTTCCCAAACGCCTCGTGCTCCTGTTGACCTTGTCACAGTTCTTGACATCAGTGG
AAGTATGGCTGGCACCAAACTAGCGTTACTAAAACGAGCTATGGGTTTTGTGATACAGAA
TCTCGGTCCCAATGATAGACTGGCAGTAATTGCCTTCTCTTCGACTGCTCGCCGCCTCTT
CCCTCTTCGTAGGATGTCTGAGACAGGACGGCAGCAAGCACTGCAAGCTGTAAACTCCCT
GGTTGCAAATGGAGGGACAAATATTGCTGAAGGCTTGAGAAAGGGCGCCAAGATAATGGA
AGACCGCAAGGAAAAGAACTCGGTTACTAGTATAATACTGTTGTCTGATGGTCAAGACAC
ATACACAGTCAGTAATAATTCTGGTAGTAGACAGCAGCAACCTAACTACAAGCTGCTTCT
ACCCTTGTCCATTCATGGTGGAAATAGTTCAGGGTTTAAAATACCAGTACATGCTTTCGG
GTTTGGTAATGATCACGATGCTTCGTCAATGCATTCAATATCAGAGATTTCAGGAGGAAC
ATTTTCATTTATTGAGACAGAAGGTGTCATACAGGATGCTTTTGCACAGTGCATTGGAGG
CCTTCTCAGTGTTGTAGTCAAGGAGCTTCAGGTAAGCATTGAGTGTCTTCACCCAGGTGT
CTGTCTTAGCTCTTTAAAAGCAGGAAGCTATCCAAACCGCTTAATGTCTGATGGACACAT
GGGAACAATTGATGTTGGAGATCTATATGCTGATGAAGAGAGGGATTTTCTGGTTTCAAT
CAATATCCCTACTGAATCTTCAGGTGCAGAAACATCATTGTTAAAGGTTAAGTGTGTATA
TGTGGATCCCTTCACGAAAGAGAAGGTTTCCATCAGAAGTGAAGATCTAAGTATCAAGAG
ACCTGAAAAGGCTGGACAAGAGAGTGTTTTGATTGAAGTAGACAGGCAGCAGAACAGGGT
CCGAGTGGCCGAGGCAATGGCACAGGCACGAGCTGCTGCTGAGAAAGGAGACCTAGTTGG
CGCGACTTCCATCCTAGAGAACTCCAGAAAGTTGTTGTCAGAGTCACAGTCTGCTAAATC
TCATGACCGGCTTTGTGTTGCACTTGATGCTGAGCTCAAGGAGATGCAGGAGAGGATGGC
AAGCAGAAATGTATACGAAGCATCAGGAAGGGCATATATCTTGTCAGGGCTGAGCTCACA
CTCGTGGCAGAGAGCAACAGCACGAGGTGACTCCACAGGTGGATCAAGTCTTGTCCAAGC
CTATCAAACCCCTTCCATGGCTGAGATGGTAACTCGATCTCAGGCTACATTACTGTCTAG
CCCTTCAGCTCAAAGACATGTTCGACCAGTGTGGTCATTTGCATCACAACCAAAGCCTAG
GTAACAGTTACATAACCTCGGAGCCTCATAGGTTACTTAGTGTTGTCTTTCCTCTTTATA
TTACTATTTAGTTTTTGAAAGGCTGAGCAGTTTTTGAATGTCCATAAATCCATGTCTATT
CTTGTAAAGGAATAAACTTCAGCCATGCAAAATCGGGGAAAGGTGCTATATAATTTTGGG
AAATGGAATGTAAGGGTACACTAGTTAGGTTCTTATGACTTTTTTGGTCCTCTTGTTTTT
GTCGTTTGTTTTGACTTTTTGTTGTTGGGGGTGATGTACATAAGGAGAGATGGCTTATTT
CTCTTGTAAAAAAGGGTATAAGTTTGTAACTGTGGGATTTTCTTGGAGAATTGTCATCTA
TAATATTAAATCCTGCAAAATTATTCTTTTCCTTCGACCTTCTTGATTATTATTCCTTCT
GCTTGCCTCTACTTTCTCCCGAGGG