Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g056030.3.1
CDS Infomation

Patatin (AHRD V3.3 *** K4C2S8_SOLLC)
Sequence

ATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATACAGATAAGCTA
AGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGATGATCAAAAG
CTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGACGGCGTTTTA
ACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAAAATATGTATC
CTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTTAGCGTATTTG
GAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGATTATTTCGAC
GTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTCAACGAAGGAT
CAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGAACAAGGTAGA
AGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCGGCGAGTTCTC
CGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAAAGAAGCATTT
ATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACCGGTTTTAATC
CCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGATGCTTTCGAA
TCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGCTGAACCGGGA
CTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGTGGCGGTTGAC
GGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCTTCATAACAAA
CAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACTTGGAACAGGG
CAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGCTAAGGACTGG
GCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGATCACTCCGTC
GCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAGGCTAATGGATCG
AGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAATGTGAAAAAG
CTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCTACTATTCGGT
GGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGCTGGAGAACTT
GTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATTTAAGCAACAT
CTCACAAATCAAGAAAAATAA

Peptide Sequence

PEP ID

Solyc05g056030.3.1
PEP Infomation

Patatin (AHRD V3.3 *** K4C2S8_SOLLC)
Sequence

MESNIISDMRLEPSIDTDKLSYEIFSILESKFLFGYDDQKLWVPKNLPSPVEDGKNDGVL
TSTATENIQAIKNQRGKICILSIDGGGMRNILSGKALAYLEQALKVKSGNPEARIADYFD
VAVGSGVGGIFTAMLFSTKDQNRPVFQAEDTWKLLEEQGRRIYPSKGSTSAGNGFLRRVL
RGGATRSDASGLEKVMKEAFMDKKTGRSLTLKDTLKPVLIPCYDLSSTAPFLFSRADAFE
SESFDFRLWEVCRATSAEPGLFEPVCMKSVDGKTGCVAVDGGLAMSNPTAAAITHVLHNK
QEFPFVRGVEDILVLSLGTGQLLEGSFQYEHVKKWKAKDWAKPMARISGDGAADMVDHSV
AMAFGQCRSSNYVRIQANGSSFGRCGVNIDADPSPNNVKKLVGIADEMLKQKNVESLLFG
GKKIAEQSNFQKLDWFAGELVQEHQRRSCRIAPTVAFKQHLTNQEK*

Transcript Sequence

Transcript ID

Solyc05g056030.3.1
Transcript Infomation

Patatin (AHRD V3.3 *** K4C2S8_SOLLC)
Sequence

AACCAAAACTGTCAAATAAGTGCTCAACTTGTTGCCTCCTCCTTTCCCCTCCTCTTTTTT
GTCTTCTCTGCATAACTTTCTTCCTCCCCTATATACTCCTCCCCTCCCCCCTTTGTGTGT
ATATACATATACATACAGAGTGAGGGAAAAGAGATATTCCCACCAACAAACACATATATA
CTGATCAAATTCCTTCCCCAAAATCACTTTTCAGATCAATTTTGAAGCATCTCTGAGGTA
AAAGGAGATTGAAAAACTTCACGCTTGTGTAGGTAAAATACCTTTATATGGGTTGAAGGT
TGAATTTTTTCAGCTGTTTGTTTTGGGAAAATCAGCAGATGGGTATTGAGGATATGGGAG
AAATTAGGTGATTCCAATAAAGAGTCTTTTGAAATTTTTGGAGTTTTTTTTGAATTGGAT
TTGTTAAGAAATGGAGTCAAATATTATATCAGATATGCGGTTAGAACCGAGCATTGATAC
AGATAAGCTAAGTTACGAGATTTTCTCTATTCTAGAAAGCAAATTCTTATTTGGTTACGA
TGATCAAAAGCTTTGGGTACCAAAAAATTTACCGTCTCCGGTTGAAGATGGCAAAAACGA
CGGCGTTTTAACCTCCACAGCGACGGAAAATATTCAGGCGATTAAGAATCAACGAGGAAA
AATATGTATCCTCAGCATTGATGGTGGTGGAATGCGAAATATATTATCAGGTAAAGCTTT
AGCGTATTTGGAACAAGCGTTGAAGGTTAAATCGGGGAATCCAGAAGCTAGAATCGCCGA
TTATTTCGACGTTGCTGTTGGTTCCGGCGTTGGAGGAATTTTCACGGCGATGTTATTTTC
AACGAAGGATCAAAACCGTCCTGTTTTCCAAGCTGAAGATACATGGAAACTTCTAGAGGA
ACAAGGTAGAAGAATTTATCCTTCAAAAGGGTCGACTTCTGCCGGAAATGGTTTTCTCCG
GCGAGTTCTCCGAGGTGGCGCAACCCGTTCTGATGCTTCCGGTTTAGAGAAAGTGATGAA
AGAAGCATTTATGGATAAAAAAACCGGTCGAAGCCTTACGTTAAAGGATACTCTTAAACC
GGTTTTAATCCCCTGTTATGACCTTTCCAGTACTGCACCGTTTTTGTTCTCCCGAGCTGA
TGCTTTCGAATCGGAAAGCTTTGATTTCCGGTTATGGGAAGTTTGCCGGGCTACATCAGC
TGAACCGGGACTCTTCGAACCGGTTTGTATGAAATCCGTCGATGGAAAAACCGGATGCGT
GGCGGTTGACGGCGGTTTAGCAATGAGCAACCCGACGGCCGCCGCGATTACCCACGTTCT
TCATAACAAACAGGAATTTCCTTTCGTTAGAGGTGTTGAGGACATTTTGGTTCTTTCACT
TGGAACAGGGCAGCTTCTAGAAGGAAGCTTCCAATATGAACATGTTAAAAAATGGAAGGC
TAAGGACTGGGCTAAGCCAATGGCCCGAATCTCCGGCGATGGTGCCGCCGATATGGTGGA
TCACTCCGTCGCCATGGCGTTTGGGCAATGTCGGAGTAGTAATTACGTCCGTATTCAGGC
TAATGGATCGAGCTTCGGTCGTTGTGGGGTGAACATAGATGCTGATCCAAGTCCTAACAA
TGTGAAAAAGCTTGTGGGAATTGCAGATGAAATGCTGAAACAGAAAAATGTAGAGTCCCT
ACTATTCGGTGGTAAGAAAATTGCAGAACAAAGCAATTTCCAGAAACTTGATTGGTTTGC
TGGAGAACTTGTACAAGAGCATCAGAGGAGGAGTTGCAGGATAGCTCCCACTGTTGCATT
TAAGCAACATCTCACAAATCAAGAAAAATAAATGAAAAGATCAAAAAAGAAAGATTTGGG
TGATGGAAGTTTACCCAAGTTATGGTTCTACAATCTTCCAACCAGTCGTGCCTTCTCTGA
TACAATCAGAGGGCTAATATGTTCGACCAAGCAATCGTTTTATTTATTAATCTTGGTCAA
TTCAAGTTGATCCGGGGCTCTTTCGATCTCCAAACCGATCCCTTGGATCTTCTTGTAGCC
ACGAGAAGACTTGGTTCTGTCGGAGTGGATATAGGTTTGAACATACAAGTTTGACAGGAG
TCAATAGTTATGGTCCAAATCTTGTACGTGTTAAAAAATCACTCAACATATACCAAAATT
AGATTCCAAACTCAACCACTAACACTTACGATCTTTATCCTAGAATCCAAAATCTATAAA
GTTCAAAACCTAGATCGGTTTCTTTTATATGTCTTATCTAAGTTTGCTGATGATGTCAAC
CAGGACCCATAATGCTCATTATTGGAACATTATGATCATACGAACCAAAAACATTGTTTT
TTTCTTAGCAATAATTGAAGTTTTGTGAACAGAAATCACAAGAAGATTTAGGTGTTGTTT
CTGTGCATCCGTGAGCTCAGTCTTGTCATTTTGTTTTTGTTTTAAAACATCAAATCACTT
GATGGGTGGGTGTAATAGTAGTTATGAGAAGAGACTCTTCCATATTTTAGTCTACCGACA
CTTTTTGGTTCTTGGATTAAGATGACATTTTCATTAATCAT