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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g055850.3.1
CDS Infomation

resistance to phytophthora 1 (AHRD V3.3 *** AT2G48070.2)
Sequence

ATGAATTTAGCTACTACAATGTCAGCATCAGTTTTAAATTACCAAATCTTGAAATTTTTC
CCACCACAGAAAAATGGGTTCTTGAGATCTCCATTGATTAGAGGAAAAAGTTGCAGATTT
TGTGTTTCTGCAAGTTCAAATGAGTTGAATAAACAAGTAATTGAAGACCCAAAAGAGGAG
ATTCAAGTAAAAAGTGATGGGGTTATTGTTAATAGTACTGAGGAGGATGAGGAAGAAAGA
AGTGGGGAAAATTCTACTTCTACTGGTCCTAGTACTGTTCTTGATAATAAGGAACTCAAA
AAGGCTGTCCTAAAAACTGCTTCAACCTTTGCACCAAGGGCTTCCACTGCTACGAAAAAC
CCTGCGAAACCTGGAACTGTTTTATACACTGTTTTTGAAGTGCAAGCCTATGCTTCAATG
TTGATAGGTGGAGCTCTGTCCTTCAATCTCATATTTCCGTCAACTGAACCTGACATCTGG
AGACTAATGGGAATGTGGTCCATATGGATGTTTACTATACCTTCCCTTCGGGCTCGAGAC
TGCTCGAAGGATGAGAAAGAAGCTCTCAATTATCTTTTTCTCCTAGTTCCCTTGCTTAAT
GTTGCAATTCCGTTCTTCTTAAAGTCATTTGCTGTCGTTTGGTCAGCGGATACTGTAGCA
TTTCTGGGGATGTATGCTTGGAAGCTCGGATGGCTACAGAAAGAGCAATGA

Peptide Sequence

PEP ID

Solyc05g055850.3.1
PEP Infomation

resistance to phytophthora 1 (AHRD V3.3 *** AT2G48070.2)
Sequence

MNLATTMSASVLNYQILKFFPPQKNGFLRSPLIRGKSCRFCVSASSNELNKQVIEDPKEE
IQVKSDGVIVNSTEEDEEERSGENSTSTGPSTVLDNKELKKAVLKTASTFAPRASTATKN
PAKPGTVLYTVFEVQAYASMLIGGALSFNLIFPSTEPDIWRLMGMWSIWMFTIPSLRARD
CSKDEKEALNYLFLLVPLLNVAIPFFLKSFAVVWSADTVAFLGMYAWKLGWLQKEQ*

Transcript Sequence

Transcript ID

Solyc05g055850.3.1
Transcript Infomation

resistance to phytophthora 1 (AHRD V3.3 *** AT2G48070.2)
Sequence

GCTCGGTGGGTAAATGTGCCTATTGAGTCATTTTGTAGCCACAAATTAAATTGACACTTC
TCCTCTCTGTTATCCTTCCCATTTTCAAGATTTCTCTTTTCACAGTTCATCTTGTTGTTA
TGTTTCACAAAAACAAAAAACAATTTGTGTACAAAATGTTGTAGCTCTTTATGAGACCTT
AATAAACTCAGTTTAGAACAAAAAGATGAATTTAGCTACTACAATGTCAGCATCAGTTTT
AAATTACCAAATCTTGAAATTTTTCCCACCACAGAAAAATGGGTTCTTGAGATCTCCATT
GATTAGAGGAAAAAGTTGCAGATTTTGTGTTTCTGCAAGTTCAAATGAGTTGAATAAACA
AGTAATTGAAGACCCAAAAGAGGAGATTCAAGTAAAAAGTGATGGGGTTATTGTTAATAG
TACTGAGGAGGATGAGGAAGAAAGAAGTGGGGAAAATTCTACTTCTACTGGTCCTAGTAC
TGTTCTTGATAATAAGGAACTCAAAAAGGCTGTCCTAAAAACTGCTTCAACCTTTGCACC
AAGGGCTTCCACTGCTACGAAAAACCCTGCGAAACCTGGAACTGTTTTATACACTGTTTT
TGAAGTGCAAGCCTATGCTTCAATGTTGATAGGTGGAGCTCTGTCCTTCAATCTCATATT
TCCGTCAACTGAACCTGACATCTGGAGACTAATGGGAATGTGGTCCATATGGATGTTTAC
TATACCTTCCCTTCGGGCTCGAGACTGCTCGAAGGATGAGAAAGAAGCTCTCAATTATCT
TTTTCTCCTAGTTCCCTTGCTTAATGTTGCAATTCCGTTCTTCTTAAAGTCATTTGCTGT
CGTTTGGTCAGCGGATACTGTAGCATTTCTGGGGATGTATGCTTGGAAGCTCGGATGGCT
ACAGAAAGAGCAATGACAAAAGAAGTGAAGGATCAGTGGTGTTCTTGTAGCTTCAATTAC
GTAGCTCATTCAGCTGATATAATTCAACAATGGCTGCTTATGTTTCACGTCGACTCTGCT
ATATCATGATCCGTTTGAAAAATGAAGCATCTACAAGCACAGTAAGAATATCTCGGATCA
AGTTGCCTTACTTCCCTCCTTTTATGCATAGACAATAGATTGTGCAGATGAATTTTTGAA
GCCCTAAAAATACTTCTGAGAAGTGACTCTTTTATGTTTACATTGAAATAAACCGCTTTA
GCTCGAAGTAAACATAATCAGATACAATTTGGTTGATTAGTTACACTTTATATACTTTGT
AGGTCATCTTAATATGCTTTTTGTATATTTCTTCTTGCATAAATGAGAAATCAAATCTTG
CAAC