Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g055790.3.1
CDS Infomation

Protein phosphatase-2c, putative (AHRD V3.3 *** B9RM68_RICCO)
Sequence

ATGGGGTCCTGCTTGTCATCTGATAGCAGGAGTCCTCATCCTGGTTCTCCTGCATCTGCA
ATTAGGAAGAGGAAGAACTCAAAGAAGAGGTCAGGATCGCGGAATTCTTCCTTTGACTTT
CATAAGGAAGAGCTTCTGCATAGGATTCCCGGGCGTATGTTCTTGAATGGTTCTAGTGAG
GTGGCTTCACTCTTCAGTCAGCAGGGAAAGAAAGGGACTAATCAAGATGCTATGATTGTG
TGGGAGAATTTCGGTTCCAGAGAAGATACTGTTTTCTGTGGTGTTTTTGATGGTCATGGT
CCTTTTGGTCATATGGTTGCAAAACGAGTCAGAGATGCACTTCCCTTGAAGCTAAGCACA
CACTGGGAAGTTAATATAAAAAGTGAAGACGTTCTAAGAGAGATCAGTCTCAACACGGGG
AGTAGCCTATATCCCGAGGATGCTGTCCTCATCTCTGCTGAGGAGTCGAGGCTCTCAATT
GATGTTGAAGAGACTAAAAATCATTTAGAAGTATTTCAGACATTGAAGGAGTCATTTCTG
AAGGCGTATAAGGTTATGGATAGAGAACTGAGAAGCTATACCAATATCGACTGCTTCTGT
AGTGGAACAACAGCAGTAACGCTAGTTAAACAGGGTGAGCATCTTGTTATTGGTAATGTT
GGAGACTCTAGAGCTGTGCTGGGTACGAGAGGCGAGGATGATTCTCTCACTGCAGTGCAA
TTGACAGTAGATCTTAAGCCCGATTTACCAGCGGAGTTTGAGAGGATTCGCAAATGTAAA
GGGCGAGTGTTTTCTCTTCAAGATGAACCGGATGTTGCAAGAGTGTGGATGCCAAATAGC
AACTCTCCTGGTCTTGCCATGGCTCGTGCTTTTGGAGATTTTTGCCTCAAGGATTTTGGT
GTCATCTCAGTACCTGAAATTTCTTATAGGCGTTTATCCGAGAAAGATGAATTCATTATT
CTGGCGACAGATGGGATTTGGGACGTGCTTTCAAACGATGAAGTAGTAAATATTGTGGAT
TCGGCTTCATCCCGTTCATCTGCAGCTCGAGCACTTGTTGAAGAAGCCGTTCAAGCCTGG
AAGATAACATACCCAACTTCTAAAGTCGATGACTGTGCTGTTGTCTGCCTCTTCCTCGAT
TCAAACTTGAATAATTTCTCTACTGCTTCTAGTACAGAAGACAACAACAAGTCTTTCATC
TCAACGGAAATGAGTGAAGTTAGCTACAATACGGGTGGTGCCCTTAGTCCACCTGCATTG
AATCGTTCCTGTACTCTTCGAGAAGGTGAAGAGGTTCCAGCAGTCAGCAATGAGGAAGCC
TGGGAACAGGATGAGTTGCTACCTAAGACGGAAAAAGAATGGTCTGCTCTTGACGCGGTA
GCTATTGGAGGATCAAAATCAAAGATGAAATAG

Peptide Sequence

PEP ID

Solyc05g055790.3.1
PEP Infomation

Protein phosphatase-2c, putative (AHRD V3.3 *** B9RM68_RICCO)
Sequence

MGSCLSSDSRSPHPGSPASAIRKRKNSKKRSGSRNSSFDFHKEELLHRIPGRMFLNGSSE
VASLFSQQGKKGTNQDAMIVWENFGSREDTVFCGVFDGHGPFGHMVAKRVRDALPLKLST
HWEVNIKSEDVLREISLNTGSSLYPEDAVLISAEESRLSIDVEETKNHLEVFQTLKESFL
KAYKVMDRELRSYTNIDCFCSGTTAVTLVKQGEHLVIGNVGDSRAVLGTRGEDDSLTAVQ
LTVDLKPDLPAEFERIRKCKGRVFSLQDEPDVARVWMPNSNSPGLAMARAFGDFCLKDFG
VISVPEISYRRLSEKDEFIILATDGIWDVLSNDEVVNIVDSASSRSSAARALVEEAVQAW
KITYPTSKVDDCAVVCLFLDSNLNNFSTASSTEDNNKSFISTEMSEVSYNTGGALSPPAL
NRSCTLREGEEVPAVSNEEAWEQDELLPKTEKEWSALDAVAIGGSKSKMK*

Transcript Sequence

Transcript ID

Solyc05g055790.3.1
Transcript Infomation

Protein phosphatase-2c, putative (AHRD V3.3 *** B9RM68_RICCO)
Sequence

ATATATATATATATATATATATATATATATATCCACAGTAACCGAAAAACAGAGTCTTAT
CGGCGCCATTTTTGGTGTATTTTTTCTTTCTCTCTGTTGTGTGTCACTCTGTTATTCGAT
TCGATTCCTATTTTTGTTCTCCTCCTCTAAATTGAACTAATCCATTCAATTTCCCCTTTT
TTCTCTTATCCATATCAAATAATTTTATCCATTTACACAGTACAAAACTGTACTGGAAAT
TCTACTTCAGCTCATTTCTACAGAGTTTTACATAGATGGTATTTTTTTTCTCCTGATTTG
GGTTTGATCTGATCAGGAAAAGAAAGTTTTTTTTGGTTGTTTTGAGGTGAATTGTTGGTG
GGTTTTTTGTTTCTTGAAGCTGAATTGGATGTGGGTTTTTGATTGTGGTTTGATCTAAAT
TGAGTTTTTTATGGGTTTTGTAGTTTATGGGAGATGATTGGTTCCTGTGTTTAAATTGAG
CTTAATTGGAAGTGGGGTTTTTGAAAATTTTGATATTTCTCTTGATTAGGTTTGATCTGA
CCAAAAAATCAAGTTTTTTTTGATGTAGATTGGAGTTGAATTTTTGTAATTTATGGGAAC
TGATTTTGGTCCTGGTGTTTAAATTGAGCTGAATTTGAAGTGGGTTGTTGAAACTTTTGA
CAAATACTTGTGGCCGGTCACTGATTTGACCTTCTTATTGTGCAAACTCTGATGGGTGTT
TTTTTTTGGCCTTAAAGCTACGTCAGATCATCAGATTGTGTCTTTATCAGCTGAGTTAAC
CTTTCTTGTAAGTGAAAGGTGATTAATAGTGGGAAGAGAGAGAGAGAGAGACAGAATAAA
AAAGGTGTCTTTTGGGGATACTGTTACTAAAAAAATTGAAAGGGGACAATAGTTTTGATA
GATCTGTTCTATATGTTAGTTGCAGTTATATTATTTTCATACTTGTAAGTTGTGATGTAG
AGGATTGTTTCAGGAACTAATTATGTATGCATGATTGTTCAAGGGTTGCTGAAAAGTTCA
CAACTTTTTGGTGGATTAGATTAGATACGGACTGCTTTTGTAGTTGAAGTGAATTGGATT
TCCATTAGCCGTCTGTTTATTGGAATTTCCCCCCTTTTTTGATTGTGTGATGATTGTGAA
GTTGGTGGATTGAGGGAGGATATACGGATTTGAATAGGGGAATAGGGTGTTTGATTATTT
AGTTGTTCTGGAGTGCTTACAGAATTTAGTCCGGGGCCTCGGGATGGGGTCCTGCTTGTC
ATCTGATAGCAGGAGTCCTCATCCTGGTTCTCCTGCATCTGCAATTAGGAAGAGGAAGAA
CTCAAAGAAGAGGTCAGGATCGCGGAATTCTTCCTTTGACTTTCATAAGGAAGAGCTTCT
GCATAGGATTCCCGGGCGTATGTTCTTGAATGGTTCTAGTGAGGTGGCTTCACTCTTCAG
TCAGCAGGGAAAGAAAGGGACTAATCAAGATGCTATGATTGTGTGGGAGAATTTCGGTTC
CAGAGAAGATACTGTTTTCTGTGGTGTTTTTGATGGTCATGGTCCTTTTGGTCATATGGT
TGCAAAACGAGTCAGAGATGCACTTCCCTTGAAGCTAAGCACACACTGGGAAGTTAATAT
AAAAAGTGAAGACGTTCTAAGAGAGATCAGTCTCAACACGGGGAGTAGCCTATATCCCGA
GGATGCTGTCCTCATCTCTGCTGAGGAGTCGAGGCTCTCAATTGATGTTGAAGAGACTAA
AAATCATTTAGAAGTATTTCAGACATTGAAGGAGTCATTTCTGAAGGCGTATAAGGTTAT
GGATAGAGAACTGAGAAGCTATACCAATATCGACTGCTTCTGTAGTGGAACAACAGCAGT
AACGCTAGTTAAACAGGGTGAGCATCTTGTTATTGGTAATGTTGGAGACTCTAGAGCTGT
GCTGGGTACGAGAGGCGAGGATGATTCTCTCACTGCAGTGCAATTGACAGTAGATCTTAA
GCCCGATTTACCAGCGGAGTTTGAGAGGATTCGCAAATGTAAAGGGCGAGTGTTTTCTCT
TCAAGATGAACCGGATGTTGCAAGAGTGTGGATGCCAAATAGCAACTCTCCTGGTCTTGC
CATGGCTCGTGCTTTTGGAGATTTTTGCCTCAAGGATTTTGGTGTCATCTCAGTACCTGA
AATTTCTTATAGGCGTTTATCCGAGAAAGATGAATTCATTATTCTGGCGACAGATGGGAT
TTGGGACGTGCTTTCAAACGATGAAGTAGTAAATATTGTGGATTCGGCTTCATCCCGTTC
ATCTGCAGCTCGAGCACTTGTTGAAGAAGCCGTTCAAGCCTGGAAGATAACATACCCAAC
TTCTAAAGTCGATGACTGTGCTGTTGTCTGCCTCTTCCTCGATTCAAACTTGAATAATTT
CTCTACTGCTTCTAGTACAGAAGACAACAACAAGTCTTTCATCTCAACGGAAATGAGTGA
AGTTAGCTACAATACGGGTGGTGCCCTTAGTCCACCTGCATTGAATCGTTCCTGTACTCT
TCGAGAAGGTGAAGAGGTTCCAGCAGTCAGCAATGAGGAAGCCTGGGAACAGGATGAGTT
GCTACCTAAGACGGAAAAAGAATGGTCTGCTCTTGACGCGGTAGCTATTGGAGGATCAAA
ATCAAAGATGAAATAGTAAGAA