Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g055510.3.1
CDS Infomation

Pectate lyase (AHRD V3.3 *** K4C2M7_SOLLC)
Sequence

ATGATTTCATTAACTTTCATTCTCTCATTTTTCTTCTTCTTAATCTTGTCATTTTCTTCA
CTAATTACATCTACTTTCAATAATCAAACACTTTCTCATCAACACCCTTTTCCTGAATCT
GTTGTTCAACAAGTAAACAGGAGGATCAATGAATCCATTTCGAGAAGGCAAATATCTGAT
ACAACGGTAATAAATTACCAATGTCTAACGGGCAATCCGATCGACGACTGCTGGCGGTGC
GACCCGAACTGGGTTGACAACCGCCAGCAGCTCGCGGATTGCGCCATCGGGTTCGGTCAC
GGTGCAGTCGGAGGGAAAGGCGGCCGGTATTACCTGGTTAGCGATCCCTCCGACTATGAC
ACCGTGAACCCTACCCCTGGAACCCTCCGGCACGCGGTGATCCAGGATGAGCCTCTCTGG
ATCACCTTCGCCGGAGACATGATCATAAGACTCAAACACGAGCTTATGATCAATAATTAC
AAGACGATAGATGGACGTGGCGCGAACGTCCACGTCACGGGTGGTGGATGTATCACACTA
CAATATGTTACAAATGTTATTATACATAATATACATGTATACAATTGTATACCATCAGGT
AATAGTAACATAAGACAAAGTACAACACAAGTTGGATGGAGAGGAATGTCAGATGGTGAT
GGAATATCAATTTATAGTTCAAGAAATATATGGATTGATCACTGTGCTTTGTCTCATTGT
ACTGATGGCTTAATTGATGCTATCATGGGATCAACAGCTATAACCATATCTAACAGCTAT
TTCACACACCATGACAAAGTTATGCTTTTAGGGCACGACGATCGATACGTACCCGATGTT
GGTATGCAGGTGACAATAGCATTTAATCATTTTGGAGAAGGATTAGTACAAAGAATGCCA
AGATGTAGAAGAGGATATATACATGTAGTAAACAATGATTTTACTGAATGGCAAATGTAT
GCAATTGGTGGAAGTGCTAATCCTACAATTAATAGCCAAGGCAATCGTTTTACTGCACCA
GAAGATCCAAATGCCAAAGAGGTGACGAAGCGTGTGGACGTGGATGAGAGGGATTGGACA
GAGTGGAACTGGAGGACAGAAGGGGATGAAATGGTAAATGGAGCATATTTTGTTCCTTCA
GGTGATGGAATTAGCAACCAATATGCTTTGGCATCAAGCATGGAGCCTAAATCTGCATTT
CTCATTGAGCAACTCACCATGAATGCTGGTGTTATTGGTGTCCCCAGGGATACCACTGTG
GCCATGTCATTTGGTGGGAGAACCAGAACAACCATTGCCGCCAACCGGAGCAGTAGTGTT
AGACCTTCAAGGTCTAAAGATGGTGATGGCGGTTTCTTAGAAAAGGTATTTGGGAGCGTT
GCATCGGCAGGATCATCAACATCATCACCTTCAAGTTCAACCATCACCATCTTGTTTTCT
CTTCTAATTTTGTATATAATCACCAACAATATTGGGCTATTATAA

Peptide Sequence

PEP ID

Solyc05g055510.3.1
PEP Infomation

Pectate lyase (AHRD V3.3 *** K4C2M7_SOLLC)
Sequence

MISLTFILSFFFFLILSFSSLITSTFNNQTLSHQHPFPESVVQQVNRRINESISRRQISD
TTVINYQCLTGNPIDDCWRCDPNWVDNRQQLADCAIGFGHGAVGGKGGRYYLVSDPSDYD
TVNPTPGTLRHAVIQDEPLWITFAGDMIIRLKHELMINNYKTIDGRGANVHVTGGGCITL
QYVTNVIIHNIHVYNCIPSGNSNIRQSTTQVGWRGMSDGDGISIYSSRNIWIDHCALSHC
TDGLIDAIMGSTAITISNSYFTHHDKVMLLGHDDRYVPDVGMQVTIAFNHFGEGLVQRMP
RCRRGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRFTAPEDPNAKEVTKRVDVDERDWT
EWNWRTEGDEMVNGAYFVPSGDGISNQYALASSMEPKSAFLIEQLTMNAGVIGVPRDTTV
AMSFGGRTRTTIAANRSSSVRPSRSKDGDGGFLEKVFGSVASAGSSTSSPSSSTITILFS
LLILYIITNNIGLL*

Transcript Sequence

Transcript ID

Solyc05g055510.3.1
Transcript Infomation

Pectate lyase (AHRD V3.3 *** K4C2M7_SOLLC)
Sequence

AGAGAGCATTGAACAAGAAGAATCATCAACAACAAAATTAGTAAATACAAGATTTCAAGA
ATACATACAACTTCATCAATCAAAAATGATTTCATTAACTTTCATTCTCTCATTTTTCTT
CTTCTTAATCTTGTCATTTTCTTCACTAATTACATCTACTTTCAATAATCAAACACTTTC
TCATCAACACCCTTTTCCTGAATCTGTTGTTCAACAAGTAAACAGGAGGATCAATGAATC
CATTTCGAGAAGGCAAATATCTGATACAACGGTAATAAATTACCAATGTCTAACGGGCAA
TCCGATCGACGACTGCTGGCGGTGCGACCCGAACTGGGTTGACAACCGCCAGCAGCTCGC
GGATTGCGCCATCGGGTTCGGTCACGGTGCAGTCGGAGGGAAAGGCGGCCGGTATTACCT
GGTTAGCGATCCCTCCGACTATGACACCGTGAACCCTACCCCTGGAACCCTCCGGCACGC
GGTGATCCAGGATGAGCCTCTCTGGATCACCTTCGCCGGAGACATGATCATAAGACTCAA
ACACGAGCTTATGATCAATAATTACAAGACGATAGATGGACGTGGCGCGAACGTCCACGT
CACGGGTGGTGGATGTATCACACTACAATATGTTACAAATGTTATTATACATAATATACA
TGTATACAATTGTATACCATCAGGTAATAGTAACATAAGACAAAGTACAACACAAGTTGG
ATGGAGAGGAATGTCAGATGGTGATGGAATATCAATTTATAGTTCAAGAAATATATGGAT
TGATCACTGTGCTTTGTCTCATTGTACTGATGGCTTAATTGATGCTATCATGGGATCAAC
AGCTATAACCATATCTAACAGCTATTTCACACACCATGACAAAGTTATGCTTTTAGGGCA
CGACGATCGATACGTACCCGATGTTGGTATGCAGGTGACAATAGCATTTAATCATTTTGG
AGAAGGATTAGTACAAAGAATGCCAAGATGTAGAAGAGGATATATACATGTAGTAAACAA
TGATTTTACTGAATGGCAAATGTATGCAATTGGTGGAAGTGCTAATCCTACAATTAATAG
CCAAGGCAATCGTTTTACTGCACCAGAAGATCCAAATGCCAAAGAGGTGACGAAGCGTGT
GGACGTGGATGAGAGGGATTGGACAGAGTGGAACTGGAGGACAGAAGGGGATGAAATGGT
AAATGGAGCATATTTTGTTCCTTCAGGTGATGGAATTAGCAACCAATATGCTTTGGCATC
AAGCATGGAGCCTAAATCTGCATTTCTCATTGAGCAACTCACCATGAATGCTGGTGTTAT
TGGTGTCCCCAGGGATACCACTGTGGCCATGTCATTTGGTGGGAGAACCAGAACAACCAT
TGCCGCCAACCGGAGCAGTAGTGTTAGACCTTCAAGGTCTAAAGATGGTGATGGCGGTTT
CTTAGAAAAGGTATTTGGGAGCGTTGCATCGGCAGGATCATCAACATCATCACCTTCAAG
TTCAACCATCACCATCTTGTTTTCTCTTCTAATTTTGTATATAATCACCAACAATATTGG
GCTATTATAACATTGCCATTATTACTCATACTACAGTAATCTAACAATGATTGCTATAAC
AACAGATGTACTAAAAGAAAATTTTCTACTTAACAGTATCAGTATCAAGGATTCTCACTT
GTACATAGTTAATTGATAGTAATATCAAGAGGGATTATACCCTTTACAAATTGTATAGAT