Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g054960.3.1
CDS Infomation

Peroxisome biogenesis protein 12 (AHRD V3.3 *** K4C2H2_SOLLC)
Sequence

ATGTTGTTTCAAGTAGGAGGACAAGGGACTCGTCCTACTTTCTTTGAAATGGCTGCTGCA
CAACAGTTGCCTTCTAGTCTTAGAGCTGCTTTAACTTATTCCCTTGGTGTTTTAGCTTTA
AGAAGACCTTTCATCCACAAAATTCTAGATTATGAGGATGAGTGCTTTGCTTTGCTTACG
CTAGTTCTTGAAACTCATAGCTTACGAACTACAGATGGGTCTTTTGCTGAGTCTTTATAT
GGTCTGCGAAGAAGGGCAGTTAACATAAAAGTTAAGGGTGATAACAAAGGTCTAGACGCC
AGAGAAGAAATTAATCACACTGGGTTGGAGAAGCGCCAAAAAGTTCTTTCAGTTGTGTTT
CTGGTCATATTGCCATATCTCAGATCAAAATTGCATTCAATCTACAATAAAGAAAGAGAG
GCTGCTCTTCAAGCTAGTTTATGGGGCACTGAGGATGAGAGATTTGGTGACACTGACTAT
TTTGATGGAAATGGAAACTCCATAGTTTCAACAAGCAGTTCAGATACAGAAGAATCAGTT
AGAGATCGTTTGAGAAAGAAAATCCGTAAGATCGTAGCTGTTTGCTACCCATGGATACAT
GCTGGAAATGAAGGTTTATCATTTGCTTACCAGCTACTGTATTTGCTGGATGCTACTGGA
TTTTACTCTCTAGGACTCCATGCCCTTGGCATTCATGTCTGTCGGGCTACAGGACAGGAG
CTGATGGATACTTCTTCTAGGATTTCTAAAATAAGAAGCCGTGAACGAGAGAGACTTCGT
GGCCCTCCTTGGCTAAAGGCAGTACAAAGTGCTTTACTAAGTTGTGCATATGGAGTTCTT
GACTATGCTCAAACTGGCCTAATAGCGGCAGTGTTTTTCTTTAAAATGATGGAGTGGTGG
TACCAGTCAGCAGAAGAAAGGATGTCAGCTCCAACTGTTTATCCACCCCCACCCCCTCCT
CCACCTCCAAAGGTTGCGAAAGATGGAATTCCACTACCTACAGACAGAACACTGTGTCCT
TTGTGCTCACAAAAGCGTGCAAATCCCTCAGTGGTGGCAGTTTCAGGATTAGTCTTCTGC
TATTCCTGCGTTTTCCGATATGTCTCTCAGTATAAGCGATGCCCTGTGACGTTGATGCCT
GCAACTGTGGATCATATCAGAAGACTATTTCATGATGTTTAA

Peptide Sequence

PEP ID

Solyc05g054960.3.1
PEP Infomation

Peroxisome biogenesis protein 12 (AHRD V3.3 *** K4C2H2_SOLLC)
Sequence

MLFQVGGQGTRPTFFEMAAAQQLPSSLRAALTYSLGVLALRRPFIHKILDYEDECFALLT
LVLETHSLRTTDGSFAESLYGLRRRAVNIKVKGDNKGLDAREEINHTGLEKRQKVLSVVF
LVILPYLRSKLHSIYNKEREAALQASLWGTEDERFGDTDYFDGNGNSIVSTSSSDTEESV
RDRLRKKIRKIVAVCYPWIHAGNEGLSFAYQLLYLLDATGFYSLGLHALGIHVCRATGQE
LMDTSSRISKIRSRERERLRGPPWLKAVQSALLSCAYGVLDYAQTGLIAAVFFFKMMEWW
YQSAEERMSAPTVYPPPPPPPPPKVAKDGIPLPTDRTLCPLCSQKRANPSVVAVSGLVFC
YSCVFRYVSQYKRCPVTLMPATVDHIRRLFHDV*

Transcript Sequence

Transcript ID

Solyc05g054960.3.1
Transcript Infomation

Peroxisome biogenesis protein 12 (AHRD V3.3 *** K4C2H2_SOLLC)
Sequence

CTGTTCTTTATCATCTTCCTTCTTCCCAAAACATCTCAATTTCATCACTGAGAAGCAAAA
GAAGAAGACAATCGGAGAAGCAGAAGCAGATAATCAGTTGAGAGGATAAGCGTTTTTTGT
TGTTGTACAGAAGAGATGTTGTTTCAAGTAGGAGGACAAGGGACTCGTCCTACTTTCTTT
GAAATGGCTGCTGCACAACAGTTGCCTTCTAGTCTTAGAGCTGCTTTAACTTATTCCCTT
GGTGTTTTAGCTTTAAGAAGACCTTTCATCCACAAAATTCTAGATTATGAGGATGAGTGC
TTTGCTTTGCTTACGCTAGTTCTTGAAACTCATAGCTTACGAACTACAGATGGGTCTTTT
GCTGAGTCTTTATATGGTCTGCGAAGAAGGGCAGTTAACATAAAAGTTAAGGGTGATAAC
AAAGGTCTAGACGCCAGAGAAGAAATTAATCACACTGGGTTGGAGAAGCGCCAAAAAGTT
CTTTCAGTTGTGTTTCTGGTCATATTGCCATATCTCAGATCAAAATTGCATTCAATCTAC
AATAAAGAAAGAGAGGCTGCTCTTCAAGCTAGTTTATGGGGCACTGAGGATGAGAGATTT
GGTGACACTGACTATTTTGATGGAAATGGAAACTCCATAGTTTCAACAAGCAGTTCAGAT
ACAGAAGAATCAGTTAGAGATCGTTTGAGAAAGAAAATCCGTAAGATCGTAGCTGTTTGC
TACCCATGGATACATGCTGGAAATGAAGGTTTATCATTTGCTTACCAGCTACTGTATTTG
CTGGATGCTACTGGATTTTACTCTCTAGGACTCCATGCCCTTGGCATTCATGTCTGTCGG
GCTACAGGACAGGAGCTGATGGATACTTCTTCTAGGATTTCTAAAATAAGAAGCCGTGAA
CGAGAGAGACTTCGTGGCCCTCCTTGGCTAAAGGCAGTACAAAGTGCTTTACTAAGTTGT
GCATATGGAGTTCTTGACTATGCTCAAACTGGCCTAATAGCGGCAGTGTTTTTCTTTAAA
ATGATGGAGTGGTGGTACCAGTCAGCAGAAGAAAGGATGTCAGCTCCAACTGTTTATCCA
CCCCCACCCCCTCCTCCACCTCCAAAGGTTGCGAAAGATGGAATTCCACTACCTACAGAC
AGAACACTGTGTCCTTTGTGCTCACAAAAGCGTGCAAATCCCTCAGTGGTGGCAGTTTCA
GGATTAGTCTTCTGCTATTCCTGCGTTTTCCGATATGTCTCTCAGTATAAGCGATGCCCT
GTGACGTTGATGCCTGCAACTGTGGATCATATCAGAAGACTATTTCATGATGTTTAATTT
GAACTTCTGCACAGGATCTGAAGGGATGAATAATATAGGAAAATATGCTCTAAATTGAGA
CTCTGAGTGACACATTTTTTTACCTAGGCCTAAATCATGGCATTAGTTGAGTGTATTCCA
CTTTTACATCATTGTTGTAGATCAAACTTTGGAGTGCAAATAATCACACAAAAAATAATT
TATCCGCATCTGGTGTTTACACTAAATTACTGTTACTCGTTCTCGTTGGCCCTTGTATGG
CATGAAGTATTTCAGTGATGGAACTGTAGATCGACACAGTATGAATTGAAATTCGAGTAG
TATGTGCCTTTTAGTGAAGTATATTTGTCTTGTATTTAGGTGCATTGTACGTAGTCTCTC
CGCGAATGAGAAAGAAGGTCAGGGGAAAAAACACGTTTTCTCTTTGCGAGATCTGAAACT
AAGAGAATGTATAGCAATTTATGAGTCCATAGGATTGAACATTACACAATGTTCTCTTGG
TAATAGGCAACAAAAGACTTTTTAAGACATGTTGGATGGAAAGTGTGTAAAGTAATTAAG
CTATTCATGGAGTGGAAAATATTATTATGAGTTGTAGTCGAAGAGGATTTGATTATTTAA
TCTTGTAAACTAATTCAAATCGAAAGAGATACGAACAGAGAGGAGTAACCAATCGATAAG
AGAAGATGAAACTATTCCATTTCAATATAGGTACGAGAAACGCTTAGGGACAATGAAGTG
GTTACGACGAGAAAGTAAATGAAAAGCATGTGAAATAATTTTTGATATCGTGTTTATTTA
AATGTTAAGAAAATATATGATCTAAATATTAACAAAGTGAATAGAGAGTTATGAGACGAA
TACATCACTAACAATTTTTTTAAATTTATTCGATAAGCATGTCGATCAAGAATATTCTAT
TTTTCTACTTTAGAAGTAAGAATAACACGTCTACATATATTTTATCGTATTCACGTTATA
CTACGTTACGTTATTATTATTGTGATAAAATAATCGAGATACGGATAAATCGACTCAAAA
AAAAGTAATAGAGAGTATTCACTATAGACTAGAGCAATACCCCTTACCCCCAATATATAC
CCATAAACCCTCAAAACCCTCAAAACTCTCAAAAACTTCATCAATGGCCTCCAAAATCAC
CAAATCCATTTCTAGAACCCTCTACACTTATCGTTTTTCTACTCGTTTCATCTCCTCCGC
TTCATCGCCGTCGATTACTCAACCGCCGTCACTTCCTGCCGTCGGATCTTCACCTCAGCC
GTCATTTCTGCTCTCACACTCCCTTCTACCTACCAACCCTAATGGCCTCAAGCCGTTTAG
CCTCAATACGGTACGGTTCAGAGTTAACCGGTCCGGTAGCTCTCCTTACACTCCAGGAAC
CGGGGACCGAGCTCCGACTGAGATGGCACCACTGTTTCCGGGATGCGATTACGAGCACTG
GCTCATTGTTATGGATAAGCCTGGTGGAGAAGGAGCTCATAAACAGCAAATGATTGATTG
TTATGTCCAAACCCTTGCTAAAGTCCTCGGGAGTGAAGAGGAAGCAAAAAAGAAGATTTA
CAATGTCTCTTGTGAGAGGTACTTTGGTTTCGGATGTGAAGTTGATGAAGAGACTGCTAA
TAAAATGGAAGGTTTGCCAGGTGTTCTGTTTGTGCTGCCTGATTCCTATGTTGATCCTGA
ATACAAGGATTATGGAGCTGAACTTTTTGTCAACGGGGAGATAATTCAAAGATCACCTGA
ACGACAGAGGAGAGTAGAGCCTGTCCCTCAGCGTAACGACAGAATAAGACCCAATAGATA
CAACAGGCGCAGAGATAACATGCGATGAATTATATCAACGCAAGGAAGATTCAGTGGGTT
TGACTCGTATTGCACGGTTGTGTGGAAGTTCATGTGTTAGAAAACTTGATACTTTTGTTT
CCTAGTCGGAACATATCTTTAATCAAACTATGTGCCTGGATTTGCTTTTTATTTCTCATT
TCGAACCAGTAGTCCTTCATCTTCTAAGTTGTGAAGACTTATCTTAAAATTTCCCAGATG
TATATACTACTATGAGATAATTTTTAAAATCTAGTACTATTGTCTGTGCTAATATAACAT
TTTGTCAGTGAAACCTTTCA