Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g054830.3.1
CDS Infomation

Ankyrin repeat family protein (AHRD V3.3 *** AT3G12360.1)
Sequence

ATGGCTTCTCCTGTGGAAGAAGGTGAGAGAGATGTCGAGAAAGGACTGATTACTCCAACA
CCAAGCCATAACCCTCTAGCTGAGCCATCACCAACCCCATCTCCATCTTCCGCAACAGCA
CCAGCTCTGGTGCTTTCCAATTCTGGCAAGAGAATTGACCAAGCAGGGAAAAAGAAATAT
GTAAAACAGGTTACGGGAAGGCACAATGACACTGAGCTTCATTTAGCAGCTCAGAAAGGT
GATCTAGCAGCAGTGAAGCAGATACTTAATGACATTGATAGTCAAATGGTCGGGACGCTG
AGCGGCGATGACTTTAATCAAGAGGTCGCGGAGATCAGAGCATCCGTAGTGAATGAAGTG
AATGAATTAGGAGAGACAGCACTCTTTACAGCAGCAGCGAAGGGATATCTTGAGGTATTG
AAAGAATTATTGAAGTACTGCAACAAGGATACTGTTACTAAGAAGAATCGGTCAGGATTT
GATCCTTTGCATATAGCTGCAAGTCAAGGACACCATGGAATCGTCCAATTGCTTTTAGAG
CATGATACCGGACTAAGTAAAACATTTGGCCCTTCAAATGCAACCCCTCTTATAACTGCT
GCCTCAAGAGGACATATTGCAGTGGTCAATGAACTGCTGTCAAAGGATTGCACCTTACTG
GAAATTTCTAGGTCCAATGGTAAAAATGCATTGCATTTAGCTGCCAGACAAGGGCACGTG
GAAATTGTGAAGGCTTTGCTTGACAGAGACCCACAATTGGCCAGGAGGACGGATAAGAAA
GGACAAACTGCATTGCATATGGCTGTAAAGGGAATCAGCTGTGAGGTGGTGATATTGCTT
CTCGAGGCTGATGCTGCTATAGTTATGCTTCCGGACAAGTTTGGCAACACAGCATTACAC
ATAGCAACCCGGAAAAAGCGTGCTGAGATAGTCAGAGAGTTGCTACGCCTGCCTGATAGT
AATGTTAATGCACTGAACAGAGATCACAAAACAGCTCTTGACATAGCTGAAGATCTTCCC
CTCTCTGAAGAATCCTCCGAAATAAAGGAATGTTTATACAAATATGGAGCTGTTAGAGCT
AATGAATTGAACCAACCAAGGGATGAGTTGAGGAAAACTGTCAGTCAGATCAAGAAAGAC
ATTCACACACAGCTTGAACAAACTAAAAGGACAAATAAAAATGTCCACGGAATTGCTAAA
GAGCTTAGAAAGCTCCATCGAGAAGGGATTAATAATGCAACGAATTCTGTGACTGTCGTT
GCTGTTCTCTTTGCCACAGTTGCCTTTGCTGCTATTTTCACTGTGCCTGGAGGTGATGAT
GAGCATGGAGTGGCTGTGGTTGTGAGCACTGCTTCATTTAAGATCTTCTTCATCTTCAAC
GCCCTTGCTCTTTTTACATCTCTTGCTGTTGTCGTAGTTCAGATTACATTGGTTAGAGGA
GAAACTAAGGCAGAAAGAAAAGTCGTCGAGGTGATTAACAAATTGATGTGGTTGGCTTCT
GTCTGCACTTCAGTGGCTTTTATGGCATCTTCTTATATAGTGGTCGGTCGCAAGTATGAA
TGGGCTGCAATATTGGTAACAGCAGTAGGGGGAATAATAATGGCCGGGGTTCTTGGAACC
ATGACTTACTATGTCGTAAGATCAAGGAAGAAAAGATCGATAAGGAAGAAGGAAAAACAT
GCTAGAAGTGGTTCCAACTCATGGTACCACTCTGAGTTCTCTAATTCTGACATTGACAGG
ATTTACGCCCTGTGA

Peptide Sequence

PEP ID

Solyc05g054830.3.1
PEP Infomation

Ankyrin repeat family protein (AHRD V3.3 *** AT3G12360.1)
Sequence

MASPVEEGERDVEKGLITPTPSHNPLAEPSPTPSPSSATAPALVLSNSGKRIDQAGKKKY
VKQVTGRHNDTELHLAAQKGDLAAVKQILNDIDSQMVGTLSGDDFNQEVAEIRASVVNEV
NELGETALFTAAAKGYLEVLKELLKYCNKDTVTKKNRSGFDPLHIAASQGHHGIVQLLLE
HDTGLSKTFGPSNATPLITAASRGHIAVVNELLSKDCTLLEISRSNGKNALHLAARQGHV
EIVKALLDRDPQLARRTDKKGQTALHMAVKGISCEVVILLLEADAAIVMLPDKFGNTALH
IATRKKRAEIVRELLRLPDSNVNALNRDHKTALDIAEDLPLSEESSEIKECLYKYGAVRA
NELNQPRDELRKTVSQIKKDIHTQLEQTKRTNKNVHGIAKELRKLHREGINNATNSVTVV
AVLFATVAFAAIFTVPGGDDEHGVAVVVSTASFKIFFIFNALALFTSLAVVVVQITLVRG
ETKAERKVVEVINKLMWLASVCTSVAFMASSYIVVGRKYEWAAILVTAVGGIIMAGVLGT
MTYYVVRSRKKRSIRKKEKHARSGSNSWYHSEFSNSDIDRIYAL*

Transcript Sequence

Transcript ID

Solyc05g054830.3.1
Transcript Infomation

Ankyrin repeat family protein (AHRD V3.3 *** AT3G12360.1)
Sequence

TTCCACTTTCCTTTACACTTCCCCTTTTTCTCATTTCTCAAATCTGATAAAAACTCTCAT
TTTTCTTGACTCTCCGTTTACTTCAATTCCTCTCTGAAATTAATTTTTTTCCCCTTTCTA
TGGCTTCTCCTGTGGAAGAAGGTGAGAGAGATGTCGAGAAAGGACTGATTACTCCAACAC
CAAGCCATAACCCTCTAGCTGAGCCATCACCAACCCCATCTCCATCTTCCGCAACAGCAC
CAGCTCTGGTGCTTTCCAATTCTGGCAAGAGAATTGACCAAGCAGGGAAAAAGAAATATG
TAAAACAGGTTACGGGAAGGCACAATGACACTGAGCTTCATTTAGCAGCTCAGAAAGGTG
ATCTAGCAGCAGTGAAGCAGATACTTAATGACATTGATAGTCAAATGGTCGGGACGCTGA
GCGGCGATGACTTTAATCAAGAGGTCGCGGAGATCAGAGCATCCGTAGTGAATGAAGTGA
ATGAATTAGGAGAGACAGCACTCTTTACAGCAGCAGCGAAGGGATATCTTGAGGTATTGA
AAGAATTATTGAAGTACTGCAACAAGGATACTGTTACTAAGAAGAATCGGTCAGGATTTG
ATCCTTTGCATATAGCTGCAAGTCAAGGACACCATGGAATCGTCCAATTGCTTTTAGAGC
ATGATACCGGACTAAGTAAAACATTTGGCCCTTCAAATGCAACCCCTCTTATAACTGCTG
CCTCAAGAGGACATATTGCAGTGGTCAATGAACTGCTGTCAAAGGATTGCACCTTACTGG
AAATTTCTAGGTCCAATGGTAAAAATGCATTGCATTTAGCTGCCAGACAAGGGCACGTGG
AAATTGTGAAGGCTTTGCTTGACAGAGACCCACAATTGGCCAGGAGGACGGATAAGAAAG
GACAAACTGCATTGCATATGGCTGTAAAGGGAATCAGCTGTGAGGTGGTGATATTGCTTC
TCGAGGCTGATGCTGCTATAGTTATGCTTCCGGACAAGTTTGGCAACACAGCATTACACA
TAGCAACCCGGAAAAAGCGTGCTGAGATAGTCAGAGAGTTGCTACGCCTGCCTGATAGTA
ATGTTAATGCACTGAACAGAGATCACAAAACAGCTCTTGACATAGCTGAAGATCTTCCCC
TCTCTGAAGAATCCTCCGAAATAAAGGAATGTTTATACAAATATGGAGCTGTTAGAGCTA
ATGAATTGAACCAACCAAGGGATGAGTTGAGGAAAACTGTCAGTCAGATCAAGAAAGACA
TTCACACACAGCTTGAACAAACTAAAAGGACAAATAAAAATGTCCACGGAATTGCTAAAG
AGCTTAGAAAGCTCCATCGAGAAGGGATTAATAATGCAACGAATTCTGTGACTGTCGTTG
CTGTTCTCTTTGCCACAGTTGCCTTTGCTGCTATTTTCACTGTGCCTGGAGGTGATGATG
AGCATGGAGTGGCTGTGGTTGTGAGCACTGCTTCATTTAAGATCTTCTTCATCTTCAACG
CCCTTGCTCTTTTTACATCTCTTGCTGTTGTCGTAGTTCAGATTACATTGGTTAGAGGAG
AAACTAAGGCAGAAAGAAAAGTCGTCGAGGTGATTAACAAATTGATGTGGTTGGCTTCTG
TCTGCACTTCAGTGGCTTTTATGGCATCTTCTTATATAGTGGTCGGTCGCAAGTATGAAT
GGGCTGCAATATTGGTAACAGCAGTAGGGGGAATAATAATGGCCGGGGTTCTTGGAACCA
TGACTTACTATGTCGTAAGATCAAGGAAGAAAAGATCGATAAGGAAGAAGGAAAAACATG
CTAGAAGTGGTTCCAACTCATGGTACCACTCTGAGTTCTCTAATTCTGACATTGACAGGA
TTTACGCCCTGTGATGAGGGAACGAAACTGTTCTGGTGTTGTATGTAGCGAAACACGAAT
TCTGGAGAGACCGATGAACACCCCTTGCACCTGGAGGGAACTGCAAGTTTCAAATGAAGA
TGTTTCATCTGTTCATATTTGGAAGGGAGGTTCCAGTTTACGCGTATCGTCGTGTCAACG
AATAAGGCTTCTGTCCCGAGCCAGAACAATGGTGATGATGTATAATTCTAAGCTTAACTC
ATGGAACTGTAGATTGTAATTTTTGGCATTGGGATCTATATATTCCCATTGATCCATAAT
GGGAAAGATTATGTATATGTAAAAAAAAAGAGACTCATAAAGTTATCAATTTCTATGGTA
TCTACCACTTTGTGTAGCAACACTTCCGAAATTTTGTTTTGAAAGTTTATCAGAAACAAT
CCGCTATTTCATAAAGGTGGATAACGCCTGTCTATATTGTATCCTTTTCAAGATGCTACT
TGTGGAATTGCACTGTATTTATTGACCGAGAAAGTTATTGTCATATAAATTGAGATCAAG
GAATTAATACTTACCAAAGTTTTAGTAATTCCTCG