Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g054150.3.1
CDS Infomation

RAB GTPase homolog A5A (AHRD V3.3 *** AT5G47520.1)
Sequence

ATGGCACACAATTCCGAGGAAGAAAAAAAAGAGGACTACCTTTTCAAGATTGTATTGATT
GGTGATTCTGCAGTTGGTAAATCGAATTTGCTTGCTAGATTTGCTAGAGATGAATTCTAT
CCAAACTCAAAATCGACAATTGGAGTAGAATTTCAGACTCAAAAGATAAACATAAATGGG
AAGGAGGTTAAAGCGCAGATATGGGATACGGCTGGTCAAGAACGATTTAGAGCAGTTACT
TCTGCATATTACAGAGGTGCAGTTGGAGCTCTTCTGGTTTATGATATTAGTAGGCGCCTG
ACTTTCGATAACATTGATCGATGGCTTAACGAGCTTCAGACTCATTCGGACATGAATGTG
GTTATAATACTCGTTGGCAACAAGTCTGATCTCAAAGACGCCAGGGAAGTTACAACAGCG
GAAGGCAAAGCCTTGGCTGAGGCGAAAGGTCTATTTTTCATCGAAACTTCAGCTTTGGAT
TCATCGAATGTAACGTCTGCTTTCCAGACAGTTGTTAGGGAGATCTATAATATTCTGAGC
AGAAAAGTCATTCAATCTCAAGAGCTCCAGAAAAAGGACTCGGGGCGGCTAGCAAATGGT
AAGTCTGTGGTTTTGCAGGCTGATGAAGGAAATGAAGATACAGTTGCAGATACAAAGAAA
GGTGGATGTTGTTCATCTTAA

Peptide Sequence

PEP ID

Solyc05g054150.3.1
PEP Infomation

RAB GTPase homolog A5A (AHRD V3.3 *** AT5G47520.1)
Sequence

MAHNSEEEKKEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKINING
KEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRLTFDNIDRWLNELQTHSDMNV
VIILVGNKSDLKDAREVTTAEGKALAEAKGLFFIETSALDSSNVTSAFQTVVREIYNILS
RKVIQSQELQKKDSGRLANGKSVVLQADEGNEDTVADTKKGGCCSS*

Transcript Sequence

Transcript ID

Solyc05g054150.3.1
Transcript Infomation

RAB GTPase homolog A5A (AHRD V3.3 *** AT5G47520.1)
Sequence

CACCATTGTATAGTGTAACAAATGCTGTAAATCTGGTGTCTCTCTCTCTCTCCTTCTCCC
ATCTTGCCTGAATCTTGAAATTTTCCTTAATCTCTCCAAAACCCAAAAACATAATCATTT
GATTCCTATGTTTTTTTCTAACAAAATTTTCAAATTACCCCATTTTTAGAGCTGTTTGAT
TCATTGATCTGGTTCTTGATTTGATCACACCACTTGATAGATTGATAAGGGAATATAGCA
TTTTGATCATTATAAAGAATTGGGTTTTGAGCTTAATACTTGACGGCAAGAAGCAAGGGA
GTGGGAGCTTAGCACAGGGACTGAATCTGAACTCGAAGAAGTAACTACAGTGACTGGAGG
GAAGTTTTAGTTCATGGTGCTTTGCAAGTCCACTTTGAATATTTTTCCACCACTCCTCAT
CTCCTGATAGAACATTTACCTCTGAGACTTCTTTCTTCTTTACTTTTGCTGTTTCCTTCT
GTAGCCGACCCCTGCCTTTGAAGTTTTTTCCAAGGGCCTATACCTGTTCATTCTTTACTT
TTCTTTATTTCGGCATAAATAAGTAGTTATGATGTTCTAGCTTCCCATTTTATGTGGTGA
AGAAGATGGCACACAATTCCGAGGAAGAAAAAAAAGAGGACTACCTTTTCAAGATTGTAT
TGATTGGTGATTCTGCAGTTGGTAAATCGAATTTGCTTGCTAGATTTGCTAGAGATGAAT
TCTATCCAAACTCAAAATCGACAATTGGAGTAGAATTTCAGACTCAAAAGATAAACATAA
ATGGGAAGGAGGTTAAAGCGCAGATATGGGATACGGCTGGTCAAGAACGATTTAGAGCAG
TTACTTCTGCATATTACAGAGGTGCAGTTGGAGCTCTTCTGGTTTATGATATTAGTAGGC
GCCTGACTTTCGATAACATTGATCGATGGCTTAACGAGCTTCAGACTCATTCGGACATGA
ATGTGGTTATAATACTCGTTGGCAACAAGTCTGATCTCAAAGACGCCAGGGAAGTTACAA
CAGCGGAAGGCAAAGCCTTGGCTGAGGCGAAAGGTCTATTTTTCATCGAAACTTCAGCTT
TGGATTCATCGAATGTAACGTCTGCTTTCCAGACAGTTGTTAGGGAGATCTATAATATTC
TGAGCAGAAAAGTCATTCAATCTCAAGAGCTCCAGAAAAAGGACTCGGGGCGGCTAGCAA
ATGGTAAGTCTGTGGTTTTGCAGGCTGATGAAGGAAATGAAGATACAGTTGCAGATACAA
AGAAAGGTGGATGTTGTTCATCTTAAGTAAAACAATCAAAT