Gene sequences

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Trait-Related Loci

Solanum lycopersicum

CDS Sequence

CDS ID	Solyc05g053800.3.1
CDS Infomation	DNA repair protein RAD50 (AHRD V3.3 *** RAD50_ARATH)
Sequence	ATGAGCACTGTAGATAAGATGCTCATAAAGGGCATCCGGAGTTTTGACCCGGAGAACAAA AACGTTATCACCTTTTTCCGACCATTAACTCTCATCGTCGGAGCTAACGGCGCCGGAAAA ACTACTGTAATTGAGTGCTTGAAGGTTGCTTGCACTGGTGATATGCCGCCAAATTGTCGC TCTGGTCATAGCTTCATCCACGACCCTAAGGTGGCTGGAGAGACGGAGACAAAGGGGCAG ATAAAGCTGCGGTTCAAAACAGCAGCAGGGAAAGATGTGGTGTGCATTAGGTCTTTTCAG CTAACTCAGAAGGCAACAAAGATGGAATACAAGGCCATTGAGAGCGTTCTACAGACTATA AATCCTCACACTGGAGAGAAAGTTTGCCTAAGTTATAGATGTGCCGATATGGACCGAGAA ATCCCTGCTCTCATGGGTGTCTCAAAGGCCATTCTTGAAAATGTGATATTTGTTCACCAA GATGAGGCAAACTGGCCATTACAAGAACCGGGTACGCTGAAAAAGAAGTTTGATGATATC TTCTCCGCTACTAGATACACAAAGGCATTGGAGGTTATCAAAAAGCTTCACAAGGATCAA TCTCAAGAAATAAAGGCGTATAAGTTGAAATTGGAGAATCTTCAGACATTGAAAGATGCT GCTTACAAGTTGCGGGAAAGCATTTCTCAGGACAAAGAGAAAACAGAGGCACTGAAGAGT CAGATGGAGGAACTTGAAAAAGAGATTCAGACTTTAGATAGTAAGATCCACCATACCGAA GCAACTTTAAAGGACCTTCATCAATTGCAGCGAGACATAGCCACCAAAAATGCTGAAAGG AGCACATTGTTCAAGGAAAAGGAAAAGCAGTATGCAGCACTTGCAGAGGAGAATGAAGAC ACTGATGAAGAACTGAGGGAGTGGAAAACAAAGTTTGATGAAAGGATAGCACTTCTGGAA TCAAAGATTAGCAAGTTGGAGAGGGAAATGAATGACTCAGAGGCAAAGAGTTCCTTTCTT AAGCAGTCCATAACAAACTATATCATGGAGATCAGCAAACTTCAAGCTGATGCCGAAGCT CATGCAGAGTTAAAAAATGAAAGAGACTTCACTCTCAGGAAGCTTTTTGACAGACACAAC TTAGGGGCTGTTCCAACTGGATCACTCAGTGATGACGTTGCTTCAAATTTAACAAATCGT ATAAAACTACGATTAACAGATTTTGATAAGGATTTACAAGATAAAAAGAAATCAAATGAG GCAGAAATTGCAGCTGCATGGCATCTATACGACATTGCAAACCGCGAATGGAGCGAAAAG GAGGCGCAAAAACAGGCTAAAGCAGATATTAAGAACGGCATTTCAAAGCGCATTAAAGAG AAAGAGGATGAACGTGATGTGCTTGAACGGCAGATTTCTGATGTTAATGTGGCTCATCTT GATGAGAGGGAAAAGAAAATGCAAATTGAATCTGAGAGGAAGTCTAAGCAGCTGGCAGAA AGAGAATTTGATTTGAACATAAGGCAAAAACAGACTGAAATGTACACCGTAGACCAAAAA CTAAAAGATCTTCGCGATGAAAAAGATCATATGGCAGCTGAGTCTGAGGACAGAATTAAG CTCTCTCTTAAGAAGGCAGAGTTGGGAAGTCTCGAGAAGAATCATAAAAAGATAATAGAT GATAATAAGGATAAGATAAAAGGAGTGTTGAAAGGAAGGCTTCCATCTGACAAGGACTTG AAGAATGAAATTACTCAGGCACAAAGGGCTCTTCAGAGAGAGGTTGATGACTTGAGTGTC AAATCCCGCGAAGCTGAGAAAGAGGTCAATATGTTGCAGATGAAAATAGAAGAAGTCAAT CAGAACTTGACTAAATATCACAAAGACATGGACTCAAGAAAGAGATTTCTGGAATCAAAG CTCCAGTTGATGGACCAGGAATTTGCTGGTATAGAGTCCTATCCCAAAATTATGGACTCA GTCAAAGAGAAAAGGGATGTCCAGAAAAGCAAGTTCAACATTGCCGATGGAATGCGGCAA ATGTTCGATCCATTTGAAAGAGTTGCTCGTGCTCATCATATTTGCCCTTGTTGTGAGCGT CCTTTCTCTGCTGAAGAGGAGGATGAATTTGTTAAGAAGCAACGTGTAAAAGCTGCAAGC TCTGCTGAGCATATTAAAGTATTGGCTATGGAGTCTTCAAATGCTGATTCTCGTTTGCAA CAAATAGACAAGCTTCGTTTGGTTTATGAAGAGTATGTCAAAGTTGGAAAGGAGTCAATA CCTCAAGCAGAGAAGAACTTAAATGAGCTGAATGAAGAATTGGACCAAAAAAATCAGGCT CTTGATGATGTGTTAGGTGTCTTGGCTCAGATAAAGGCTGAGAAGGATGCAGTTGATGCG CTAATACAACCTGTAGAAACATTTGACAGGCTTTTCCAAGAAATTCAAGTTCGGCAGAAG CAGGTTGATGATTTGGAATATGGTCTAGATATCCGTGGGCAAGGGGTAAGATCCATGGAG GAAATTCAATCAGAATTGGATGAACTGCAGAGCAAAAAAGACAATTTGTATACGGAGGTG GAGAAGCTGAGAAATGACCAGAGATACATGGAAAATGAATATGCAAGTTTCCAACTAAGA TGGGCTAATGTAAGGGAAGAGAAGTCACGAGTAGCAAACAGATTGGAGCAAATTAAAAGG ATAGAAGAGGAATTGGATCGCTTCACGGAGGAGAAAAATCAAATTGAGCTTGAAGAGAAG CATCTTGCAGACGCTTTTGGTTCCTTATTGAAGGAAAAGGACAAACACTTTAGAGACCAC AAGGATCTGAAAATAAAACTTGGTGAACAGTTGGAAGAGCAGGCAGAAATTAGAAGAAAT TATCAACAGGAAGTAGATTCACTTTTGAAGATTACCTCCAAAATTAAAGAATATTATGAT TTGAAGAAAGAACAAAGATTGAATGAACTGCAGGACAAGCGAAGCCTGTCAGAATCTCAA CTCCAAAGTTGCGAGTCCAGAAAGGATGCGATTTTGGCTGAAGTGAAGAAAAGTAAGGAT TTAATGGGGAACCAGGATAGGTTGAGACGTAACATTGAGGATAACTTGAACTATCGTAAA ATTAAGTCTGAAGTTGATGAGCTCACTCATGAGATTGAATTACTGGAAGATAAAGTGCTG ACGTTGGGTGGGTTTTCTTCTGTTGAAGCTGAGCTTAAAAAGCTTTCACACGAAAGAGAG AGGCTACTCTCTGAGTTAAACAAGTGTCATGGCACCTTATCTGTTTATCAAAGCAATATC TCCAAGAACAAAGTTGATCTTAAGCAGGCACAATACAAGGATATTGACAAACGCTATTTT GATCAGCTAATCCAGCTTAAGACTACGGAGATGGCAAACAAGGATCTGGACAGATATTAC AATGCCCTTGATAAAGCACTGATGCGATTCCACTCAATGAAAATGGAAGAAATAAATAAG ATTATCAGGGAACTGTGGCAACAAACATACAGGGGCCAGGACATAGACTACATAAGCATT CATTCAGATTCTGAAGGATCTGGCACTCGATCCTACAGCTATAAGGTTGTGATGTTGACT GGTGATACTGAACTAGAAATGCGAGGGAGGTGTAGTGCTGGCCAAAAGGTCCTTGCATCA CTCATCATACGATTGGCGTTGGCTGAAACTTTTTGTCTCAACTGCGGAATTCTAGCACTG GATGAACCTACCACAAACCTAGACGGCCCCAACAGTGAGAGTCTTGCTGCAGCTCTGTTA AGAATTATGGAGGACAGAAAAGGCCAAGAAAACTTTCAACTAATTGTCATTACACACGAT GAGCGATTTGCTCAATATATTGGCCAACGCCAGCATGCAGAAAAGTATTATCGCATCTCA AAAGACGACCATCAGCACAGTATAATTGAAGCTCAGGAAATATTTGATTGA

Peptide Sequence

PEP ID	Solyc05g053800.3.1
PEP Infomation	DNA repair protein RAD50 (AHRD V3.3 *** RAD50_ARATH)
Sequence	MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGANGAGKTTVIECLKVACTGDMPPNCR SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKATKMEYKAIESVLQTI NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQEPGTLKKKFDDI FSATRYTKALEVIKKLHKDQSQEIKAYKLKLENLQTLKDAAYKLRESISQDKEKTEALKS QMEELEKEIQTLDSKIHHTEATLKDLHQLQRDIATKNAERSTLFKEKEKQYAALAEENED TDEELREWKTKFDERIALLESKISKLEREMNDSEAKSSFLKQSITNYIMEISKLQADAEA HAELKNERDFTLRKLFDRHNLGAVPTGSLSDDVASNLTNRIKLRLTDFDKDLQDKKKSNE AEIAAAWHLYDIANREWSEKEAQKQAKADIKNGISKRIKEKEDERDVLERQISDVNVAHL DEREKKMQIESERKSKQLAEREFDLNIRQKQTEMYTVDQKLKDLRDEKDHMAAESEDRIK LSLKKAELGSLEKNHKKIIDDNKDKIKGVLKGRLPSDKDLKNEITQAQRALQREVDDLSV KSREAEKEVNMLQMKIEEVNQNLTKYHKDMDSRKRFLESKLQLMDQEFAGIESYPKIMDS VKEKRDVQKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQRVKAAS SAEHIKVLAMESSNADSRLQQIDKLRLVYEEYVKVGKESIPQAEKNLNELNEELDQKNQA LDDVLGVLAQIKAEKDAVDALIQPVETFDRLFQEIQVRQKQVDDLEYGLDIRGQGVRSME EIQSELDELQSKKDNLYTEVEKLRNDQRYMENEYASFQLRWANVREEKSRVANRLEQIKR IEEELDRFTEEKNQIELEEKHLADAFGSLLKEKDKHFRDHKDLKIKLGEQLEEQAEIRRN YQQEVDSLLKITSKIKEYYDLKKEQRLNELQDKRSLSESQLQSCESRKDAILAEVKKSKD LMGNQDRLRRNIEDNLNYRKIKSEVDELTHEIELLEDKVLTLGGFSSVEAELKKLSHERE RLLSELNKCHGTLSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY NALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGSGTRSYSYKVVMLT GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL RIMEDRKGQENFQLIVITHDERFAQYIGQRQHAEKYYRISKDDHQHSIIEAQEIFD*

Transcript Sequence

Transcript ID	Solyc05g053800.3.1
Transcript Infomation	DNA repair protein RAD50 (AHRD V3.3 *** RAD50_ARATH)
Sequence	TTGATAATTTTACTAATTTATATATTATATATATACACTAAAAAACAAAAACAAAAGGAA CACATAGGGCCAGAGCCTGAGATTTTACTAAACCCAAATGCGAATTTGCCGTCGACGGAG CTCCGGCAGAAGCTGAAAGAAGAAGAAGAAGACGATTAGCAAAAGATGAGCACTGTAGAT AAGATGCTCATAAAGGGCATCCGGAGTTTTGACCCGGAGAACAAAAACGTTATCACCTTT TTCCGACCATTAACTCTCATCGTCGGAGCTAACGGCGCCGGAAAAACTACTGTAATTGAG TGCTTGAAGGTTGCTTGCACTGGTGATATGCCGCCAAATTGTCGCTCTGGTCATAGCTTC ATCCACGACCCTAAGGTGGCTGGAGAGACGGAGACAAAGGGGCAGATAAAGCTGCGGTTC AAAACAGCAGCAGGGAAAGATGTGGTGTGCATTAGGTCTTTTCAGCTAACTCAGAAGGCA ACAAAGATGGAATACAAGGCCATTGAGAGCGTTCTACAGACTATAAATCCTCACACTGGA GAGAAAGTTTGCCTAAGTTATAGATGTGCCGATATGGACCGAGAAATCCCTGCTCTCATG GGTGTCTCAAAGGCCATTCTTGAAAATGTGATATTTGTTCACCAAGATGAGGCAAACTGG CCATTACAAGAACCGGGTACGCTGAAAAAGAAGTTTGATGATATCTTCTCCGCTACTAGA TACACAAAGGCATTGGAGGTTATCAAAAAGCTTCACAAGGATCAATCTCAAGAAATAAAG GCGTATAAGTTGAAATTGGAGAATCTTCAGACATTGAAAGATGCTGCTTACAAGTTGCGG GAAAGCATTTCTCAGGACAAAGAGAAAACAGAGGCACTGAAGAGTCAGATGGAGGAACTT GAAAAAGAGATTCAGACTTTAGATAGTAAGATCCACCATACCGAAGCAACTTTAAAGGAC CTTCATCAATTGCAGCGAGACATAGCCACCAAAAATGCTGAAAGGAGCACATTGTTCAAG GAAAAGGAAAAGCAGTATGCAGCACTTGCAGAGGAGAATGAAGACACTGATGAAGAACTG AGGGAGTGGAAAACAAAGTTTGATGAAAGGATAGCACTTCTGGAATCAAAGATTAGCAAG TTGGAGAGGGAAATGAATGACTCAGAGGCAAAGAGTTCCTTTCTTAAGCAGTCCATAACA AACTATATCATGGAGATCAGCAAACTTCAAGCTGATGCCGAAGCTCATGCAGAGTTAAAA AATGAAAGAGACTTCACTCTCAGGAAGCTTTTTGACAGACACAACTTAGGGGCTGTTCCA ACTGGATCACTCAGTGATGACGTTGCTTCAAATTTAACAAATCGTATAAAACTACGATTA ACAGATTTTGATAAGGATTTACAAGATAAAAAGAAATCAAATGAGGCAGAAATTGCAGCT GCATGGCATCTATACGACATTGCAAACCGCGAATGGAGCGAAAAGGAGGCGCAAAAACAG GCTAAAGCAGATATTAAGAACGGCATTTCAAAGCGCATTAAAGAGAAAGAGGATGAACGT GATGTGCTTGAACGGCAGATTTCTGATGTTAATGTGGCTCATCTTGATGAGAGGGAAAAG AAAATGCAAATTGAATCTGAGAGGAAGTCTAAGCAGCTGGCAGAAAGAGAATTTGATTTG AACATAAGGCAAAAACAGACTGAAATGTACACCGTAGACCAAAAACTAAAAGATCTTCGC GATGAAAAAGATCATATGGCAGCTGAGTCTGAGGACAGAATTAAGCTCTCTCTTAAGAAG GCAGAGTTGGGAAGTCTCGAGAAGAATCATAAAAAGATAATAGATGATAATAAGGATAAG ATAAAAGGAGTGTTGAAAGGAAGGCTTCCATCTGACAAGGACTTGAAGAATGAAATTACT CAGGCACAAAGGGCTCTTCAGAGAGAGGTTGATGACTTGAGTGTCAAATCCCGCGAAGCT GAGAAAGAGGTCAATATGTTGCAGATGAAAATAGAAGAAGTCAATCAGAACTTGACTAAA TATCACAAAGACATGGACTCAAGAAAGAGATTTCTGGAATCAAAGCTCCAGTTGATGGAC CAGGAATTTGCTGGTATAGAGTCCTATCCCAAAATTATGGACTCAGTCAAAGAGAAAAGG GATGTCCAGAAAAGCAAGTTCAACATTGCCGATGGAATGCGGCAAATGTTCGATCCATTT GAAAGAGTTGCTCGTGCTCATCATATTTGCCCTTGTTGTGAGCGTCCTTTCTCTGCTGAA GAGGAGGATGAATTTGTTAAGAAGCAACGTGTAAAAGCTGCAAGCTCTGCTGAGCATATT AAAGTATTGGCTATGGAGTCTTCAAATGCTGATTCTCGTTTGCAACAAATAGACAAGCTT CGTTTGGTTTATGAAGAGTATGTCAAAGTTGGAAAGGAGTCAATACCTCAAGCAGAGAAG AACTTAAATGAGCTGAATGAAGAATTGGACCAAAAAAATCAGGCTCTTGATGATGTGTTA GGTGTCTTGGCTCAGATAAAGGCTGAGAAGGATGCAGTTGATGCGCTAATACAACCTGTA GAAACATTTGACAGGCTTTTCCAAGAAATTCAAGTTCGGCAGAAGCAGGTTGATGATTTG GAATATGGTCTAGATATCCGTGGGCAAGGGGTAAGATCCATGGAGGAAATTCAATCAGAA TTGGATGAACTGCAGAGCAAAAAAGACAATTTGTATACGGAGGTGGAGAAGCTGAGAAAT GACCAGAGATACATGGAAAATGAATATGCAAGTTTCCAACTAAGATGGGCTAATGTAAGG GAAGAGAAGTCACGAGTAGCAAACAGATTGGAGCAAATTAAAAGGATAGAAGAGGAATTG GATCGCTTCACGGAGGAGAAAAATCAAATTGAGCTTGAAGAGAAGCATCTTGCAGACGCT TTTGGTTCCTTATTGAAGGAAAAGGACAAACACTTTAGAGACCACAAGGATCTGAAAATA AAACTTGGTGAACAGTTGGAAGAGCAGGCAGAAATTAGAAGAAATTATCAACAGGAAGTA GATTCACTTTTGAAGATTACCTCCAAAATTAAAGAATATTATGATTTGAAGAAAGAACAA AGATTGAATGAACTGCAGGACAAGCGAAGCCTGTCAGAATCTCAACTCCAAAGTTGCGAG TCCAGAAAGGATGCGATTTTGGCTGAAGTGAAGAAAAGTAAGGATTTAATGGGGAACCAG GATAGGTTGAGACGTAACATTGAGGATAACTTGAACTATCGTAAAATTAAGTCTGAAGTT GATGAGCTCACTCATGAGATTGAATTACTGGAAGATAAAGTGCTGACGTTGGGTGGGTTT TCTTCTGTTGAAGCTGAGCTTAAAAAGCTTTCACACGAAAGAGAGAGGCTACTCTCTGAG TTAAACAAGTGTCATGGCACCTTATCTGTTTATCAAAGCAATATCTCCAAGAACAAAGTT GATCTTAAGCAGGCACAATACAAGGATATTGACAAACGCTATTTTGATCAGCTAATCCAG CTTAAGACTACGGAGATGGCAAACAAGGATCTGGACAGATATTACAATGCCCTTGATAAA GCACTGATGCGATTCCACTCAATGAAAATGGAAGAAATAAATAAGATTATCAGGGAACTG TGGCAACAAACATACAGGGGCCAGGACATAGACTACATAAGCATTCATTCAGATTCTGAA GGATCTGGCACTCGATCCTACAGCTATAAGGTTGTGATGTTGACTGGTGATACTGAACTA GAAATGCGAGGGAGGTGTAGTGCTGGCCAAAAGGTCCTTGCATCACTCATCATACGATTG GCGTTGGCTGAAACTTTTTGTCTCAACTGCGGAATTCTAGCACTGGATGAACCTACCACA AACCTAGACGGCCCCAACAGTGAGAGTCTTGCTGCAGCTCTGTTAAGAATTATGGAGGAC AGAAAAGGCCAAGAAAACTTTCAACTAATTGTCATTACACACGATGAGCGATTTGCTCAA TATATTGGCCAACGCCAGCATGCAGAAAAGTATTATCGCATCTCAAAAGACGACCATCAG CACAGTATAATTGAAGCTCAGGAAATATTTGATTGATATCACATGGTTTCAGTCTCCGAC GGTATTATATATTAAGACGCTTCATAGCTCGACTTATGTACGTATCGAAAAACTAGTGAT TCACCATTTGATAGGAACTGGATAGGAGAATCTCATTGTTCTATCTTTTCTTGTGTAAAA TGTATTCTGTAAATTAGTGTTCATCTCATCTTAAATTATATATGCTGAACCACTATTTGT AAAATCTTCGACTCTGCATTTCCCTTGGCATTTGAGGGGGAGTTTTGCAAGACACAACTG AAATGCATTTGATAAGACCCCCTTGGTGGGAGGTCGTTTCTGATAGACCCTCGACACTGC TTGA