Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g053290.3.1
CDS Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT3G62260.2)
Sequence

ATGATTGTGAAGAATTCGACGGCGGCGGCGAAGATGGTGGTAGTAGATGCGGAGATTTTG
TGTCAACCGAATGTTTCCGTTGAGTACATCGGAGTTTCAACGGCGGCGCCGGTGGTCGGG
GATGAGGATTTGGACTTCTTTGATGTTTCGGCTACTGCTACGTCTTCTTCTCTTACAAAA
TCTCGTGAATTTCGCTCGGCTGATTTGGTTTCTGTTGATATTTCTCTGTCTGACTCGGGT
GTGAGATGCTCAACTAATACTCAGACAACTATAATTGATTCAGCTAGAAGCAGTAATGTT
ATCCCAGCTATTCGTTCGGGTAGCTATACTGATATTGGACCTCGTAGATCCAATGAAGAT
GAGCATATTCGTGTTGATGATCTTTCAGCTCAGTTAGGATCTCTATACAATTGGCCTCTT
CCAGGTGCCTTCTATGCTGTGTTTGATGGTCATGGAGGTTCTGATGCAGCTGCTTATGTC
AGGACTAATGCAATGAGATTTTTCTTTGAAGATGCTAATTTGCCGCAAACATCTATTGTT
GATCAAGCATTCTTGGAAGAATTGGAGAGTTCCCATTTTAGAGCATTTTTAATTGCTGAC
CAGGCCTTAGCTGATGAATGTAGTGTTGATGCTTATTGTGGGACAACAGCAATAACTGCG
CTGGTCCTAGGAAGACATCTGGTTATTGCTAATGCTGGCGACTGTCGTGCTGTTCTTTGT
AGGAAAGGTGTTGCAGTTCAGTTGTCTCAAGATCACAGGCCAACTTGTCTGGCGGAACGA
CAAAGAGTTGAGAAATTGGGCGGTATTATTGAATATGGTTGCTTAAATGGTGATCTTGCT
ATTACTCGAGCCCTTGGAGATTGGTATATGAAGCTTCCATTTGGGTCTGCATCTCCTCTT
ACTGCAGAACCAGAAGTTCAGCAATTGTTGTTGACCGAGGATGATGAGTTCATGATACTT
GGTTGCGATGGCATCTGGGATGTGATGTCTAACCAAGATGCAGTGAATGTCGTTCGCCAT
GAGCTTAGGCTGCACAATGACCCACAGCAGTCTGCCAGAGAACTTGTGAATCAAGCTTTA
TGTAAAGACACAGACGACAATCTCACTGCAATTGTTGTATGCTTTACTTCACCTGATCAC
CGAACTTCCGTTCCATCACAGAGACCAAGATTCAGGTGTTGCAATTTGTCCGAGGACGCA
AGGAAGAAGCTGCAAAGTTTGTTAGGAAGCAATTGA

Peptide Sequence

PEP ID

Solyc05g053290.3.1
PEP Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT3G62260.2)
Sequence

MIVKNSTAAAKMVVVDAEILCQPNVSVEYIGVSTAAPVVGDEDLDFFDVSATATSSSLTK
SREFRSADLVSVDISLSDSGVRCSTNTQTTIIDSARSSNVIPAIRSGSYTDIGPRRSNED
EHIRVDDLSAQLGSLYNWPLPGAFYAVFDGHGGSDAAAYVRTNAMRFFFEDANLPQTSIV
DQAFLEELESSHFRAFLIADQALADECSVDAYCGTTAITALVLGRHLVIANAGDCRAVLC
RKGVAVQLSQDHRPTCLAERQRVEKLGGIIEYGCLNGDLAITRALGDWYMKLPFGSASPL
TAEPEVQQLLLTEDDEFMILGCDGIWDVMSNQDAVNVVRHELRLHNDPQQSARELVNQAL
CKDTDDNLTAIVVCFTSPDHRTSVPSQRPRFRCCNLSEDARKKLQSLLGSN*

Transcript Sequence

Transcript ID

Solyc05g053290.3.1
Transcript Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT3G62260.2)
Sequence

TTTAATCCGAGTAAATACTAAGCCGACTCTTAATCTATAAATTTCTTCAAGAACCCAACT
TGCTTTTGCTTCTATTTCAGCGATTAATTAAACCCTAATCTGTTTTTAACAAACAAATTT
TATACATAAAATCTCTCGTAATCCAAATTATTGTTCAATTTTGGATTAAACTCATTTGAT
GATTGTGAAGAATTCGACGGCGGCGGCGAAGATGGTGGTAGTAGATGCGGAGATTTTGTG
TCAACCGAATGTTTCCGTTGAGTACATCGGAGTTTCAACGGCGGCGCCGGTGGTCGGGGA
TGAGGATTTGGACTTCTTTGATGTTTCGGCTACTGCTACGTCTTCTTCTCTTACAAAATC
TCGTGAATTTCGCTCGGCTGATTTGGTTTCTGTTGATATTTCTCTGTCTGACTCGGGTGT
GAGATGCTCAACTAATACTCAGACAACTATAATTGATTCAGCTAGAAGCAGTAATGTTAT
CCCAGCTATTCGTTCGGGTAGCTATACTGATATTGGACCTCGTAGATCCAATGAAGATGA
GCATATTCGTGTTGATGATCTTTCAGCTCAGTTAGGATCTCTATACAATTGGCCTCTTCC
AGGTGCCTTCTATGCTGTGTTTGATGGTCATGGAGGTTCTGATGCAGCTGCTTATGTCAG
GACTAATGCAATGAGATTTTTCTTTGAAGATGCTAATTTGCCGCAAACATCTATTGTTGA
TCAAGCATTCTTGGAAGAATTGGAGAGTTCCCATTTTAGAGCATTTTTAATTGCTGACCA
GGCCTTAGCTGATGAATGTAGTGTTGATGCTTATTGTGGGACAACAGCAATAACTGCGCT
GGTCCTAGGAAGACATCTGGTTATTGCTAATGCTGGCGACTGTCGTGCTGTTCTTTGTAG
GAAAGGTGTTGCAGTTCAGTTGTCTCAAGATCACAGGCCAACTTGTCTGGCGGAACGACA
AAGAGTTGAGAAATTGGGCGGTATTATTGAATATGGTTGCTTAAATGGTGATCTTGCTAT
TACTCGAGCCCTTGGAGATTGGTATATGAAGCTTCCATTTGGGTCTGCATCTCCTCTTAC
TGCAGAACCAGAAGTTCAGCAATTGTTGTTGACCGAGGATGATGAGTTCATGATACTTGG
TTGCGATGGCATCTGGGATGTGATGTCTAACCAAGATGCAGTGAATGTCGTTCGCCATGA
GCTTAGGCTGCACAATGACCCACAGCAGTCTGCCAGAGAACTTGTGAATCAAGCTTTATG
TAAAGACACAGACGACAATCTCACTGCAATTGTTGTATGCTTTACTTCACCTGATCACCG
AACTTCCGTTCCATCACAGAGACCAAGATTCAGGTGTTGCAATTTGTCCGAGGACGCAAG
GAAGAAGCTGCAAAGTTTGTTAGGAAGCAATTGA