Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g052980.3.1
CDS Infomation

Protein phosphatase 2C (AHRD V3.3 *** Q8RVG0_TOBAC)
Sequence

ATGGCTGGAATGTGTTGTGGAGTTAATATAGCCGAAACTGAGGCTACTACACCAGTTGAG
CCTAGTTCAGAATCTGCGAGGAGAAGAAGAATGGAAATTCATCAATTCCGTTTTGTACCT
ACCGATGTTGCAGCTGCAACACAGGAAAAAAATGGACGGAAAAGGCATAAGATTGACAAA
GTTATTGATAATAACAAGAGGCAGAAATTGGAAAGCAGTGTAACGATTTCGTTGGCGGTA
ACTGATGAAAGGAATGAAAATGAAGTGTTGGATCTGTCTGAATCTGGTTCTCAATCTGTT
GAAATTGAGCCTGATTTACCCAAATATGGGATGACTTCTGTATGTGGAAGAAGAAGAGAT
ATGGAAGATGCGGTTTCGATTCATCCTTTGTTTTGCAAAGAGAATAGTGAAAACTCAAGC
AATTTACATTTCTTCGGTGTTTATGATGGCCATGGCTGTTCTCATGTGGCGATGAAGTGT
AAAGATCGAATGCACGAGATAGTGAAAAATGAGGTGGAGAAGGAAGAAACTCAATGGAAA
GAAGCAATGATTCAGAGCTTTTCGTTAATGGATAAAGAAGTTGTTAATTATTCTACTAGC
GTACTTCCATCTTCTACCTCAGGTTCCAATTGTAGATGCGAGCTTCAAACTCCACAGTGC
GATGCCGTTGGATCAACTGCCGTCGTTGCCGTTGTAACTCCGGACAAAATCATCGTTTCC
AATTGCGGTGATTCTCGTGCCGTCCTCTGTAGAAACGGCGTCGCTATTCCTCTTTCCGTT
GATCATAAGCCGGATCGACCTGATGAATTGAATAGAATACAAGAAGCTGGTGGCCGTGTT
ATATATTGGGACGGAGCTAGAGTTCTCGGCGTTTTAGCAATGTCTCGAGCCATTGGTGAC
AATTATTTGAAACCATATGTTATATCTGAACCGGAGGTCACTATAACAGATCGAACCAAC
GAAGATGAGTGTTTGATATTAGCCAGTGATGGATTATGGGACGTGGTATCGAACGAGACC
GCGTGTGGCGTGGCACGTATGTGTTTGCAATCGAGACGGCCACCGTCTCCGGCGGGATCG
CCGGGAAATGATATTACGGTGACCGGCGCCGGAGAAAGCTCCGACAAGGCGTGTTCAGAT
GCATCAATTCTATTGACGAAATTAGCCTTGGCTAGGCATAGTAGTGATAATGTTAGTGTT
GTTGTGGTGGATTTGAGAAAAAATCTATAA

Peptide Sequence

PEP ID

Solyc05g052980.3.1
PEP Infomation

Protein phosphatase 2C (AHRD V3.3 *** Q8RVG0_TOBAC)
Sequence

MAGMCCGVNIAETEATTPVEPSSESARRRRMEIHQFRFVPTDVAAATQEKNGRKRHKIDK
VIDNNKRQKLESSVTISLAVTDERNENEVLDLSESGSQSVEIEPDLPKYGMTSVCGRRRD
MEDAVSIHPLFCKENSENSSNLHFFGVYDGHGCSHVAMKCKDRMHEIVKNEVEKEETQWK
EAMIQSFSLMDKEVVNYSTSVLPSSTSGSNCRCELQTPQCDAVGSTAVVAVVTPDKIIVS
NCGDSRAVLCRNGVAIPLSVDHKPDRPDELNRIQEAGGRVIYWDGARVLGVLAMSRAIGD
NYLKPYVISEPEVTITDRTNEDECLILASDGLWDVVSNETACGVARMCLQSRRPPSPAGS
PGNDITVTGAGESSDKACSDASILLTKLALARHSSDNVSVVVVDLRKNL*

Transcript Sequence

Transcript ID

Solyc05g052980.3.1
Transcript Infomation

Protein phosphatase 2C (AHRD V3.3 *** Q8RVG0_TOBAC)
Sequence

CACATTTTTTTCTCCAATTTTTTTGTTTTTCCATTCTATAATGGCTGGAATGTGTTGTGG
AGTTAATATAGCCGAAACTGAGGCTACTACACCAGTTGAGCCTAGTTCAGAATCTGCGAG
GAGAAGAAGAATGGAAATTCATCAATTCCGTTTTGTACCTACCGATGTTGCAGCTGCAAC
ACAGGAAAAAAATGGACGGAAAAGGCATAAGATTGACAAAGTTATTGATAATAACAAGAG
GCAGAAATTGGAAAGCAGTGTAACGATTTCGTTGGCGGTAACTGATGAAAGGAATGAAAA
TGAAGTGTTGGATCTGTCTGAATCTGGTTCTCAATCTGTTGAAATTGAGCCTGATTTACC
CAAATATGGGATGACTTCTGTATGTGGAAGAAGAAGAGATATGGAAGATGCGGTTTCGAT
TCATCCTTTGTTTTGCAAAGAGAATAGTGAAAACTCAAGCAATTTACATTTCTTCGGTGT
TTATGATGGCCATGGCTGTTCTCATGTGGCGATGAAGTGTAAAGATCGAATGCACGAGAT
AGTGAAAAATGAGGTGGAGAAGGAAGAAACTCAATGGAAAGAAGCAATGATTCAGAGCTT
TTCGTTAATGGATAAAGAAGTTGTTAATTATTCTACTAGCGTACTTCCATCTTCTACCTC
AGGTTCCAATTGTAGATGCGAGCTTCAAACTCCACAGTGCGATGCCGTTGGATCAACTGC
CGTCGTTGCCGTTGTAACTCCGGACAAAATCATCGTTTCCAATTGCGGTGATTCTCGTGC
CGTCCTCTGTAGAAACGGCGTCGCTATTCCTCTTTCCGTTGATCATAAGCCGGATCGACC
TGATGAATTGAATAGAATACAAGAAGCTGGTGGCCGTGTTATATATTGGGACGGAGCTAG
AGTTCTCGGCGTTTTAGCAATGTCTCGAGCCATTGGTGACAATTATTTGAAACCATATGT
TATATCTGAACCGGAGGTCACTATAACAGATCGAACCAACGAAGATGAGTGTTTGATATT
AGCCAGTGATGGATTATGGGACGTGGTATCGAACGAGACCGCGTGTGGCGTGGCACGTAT
GTGTTTGCAATCGAGACGGCCACCGTCTCCGGCGGGATCGCCGGGAAATGATATTACGGT
GACCGGCGCCGGAGAAAGCTCCGACAAGGCGTGTTCAGATGCATCAATTCTATTGACGAA
ATTAGCCTTGGCTAGGCATAGTAGTGATAATGTTAGTGTTGTTGTGGTGGATTTGAGAAA
AAATCTATAACAGTATGGGTGCTTAATTAGTACTAGTTTTAATCATAATTAATTAATTAA
GTGTATAATTAAGGGGAAACTCTAATTTTAGGTTTTAATTGTCATGGGTTTAGCTAATGA
AGCTAAGATTGAAGATGGTTTGATTTATTAGTTTAGCTGATTTAGCTGCCTTTGTTGATG
ATTAGTATTGCTAATTATTATTATTGTTATTATTATATATTTTAGAGAAATGGAGATGAG
AAATTGTAAAGAAGTGGATCTTTTTTCCAACTGTCCCAGATTTTATGTGAAATATAGAAA
ATACAAAATCATA