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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g052700.3.1
CDS Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT3G47080.1)
Sequence

TCAACCCTTTCTTTTCTCAATTCATCTCCAAAATCAAACAAATGGGGTCATAAAAATCCA
AACTTTATTTGTAAACTTGTTCTTTTTAGCCCAAAATCACTTGGTTCACAATATTTTGAG
AAAAATGAGTCTAAAGGTCATAGTAGAAGCATACAACCATGTTGTTGTAGTTCAAGATTT
GATGAAGAAAAATTTGATGGTGAAGGGATTGAAAGAGGGGAAAATGAAGGGTCTTGTGCA
ATTTTTGGGAGTAAAGATTCAATTTTTCCATCAAAATTTGAGTCTCTTGAGCCAAGTTTG
TTTGGTATTGAGGCAGAACCAGAAGCACCCTATTGGCCAGAAAGGGAGGAAGTTTTATGG
GCACATATAGAACAAAAAGCCAAAAGTTTTGGACTTCCTTTGTCACTTAGAATGATGCAA
AAGAAACATCAATGGGAATCTTGTAGATTTAAAGATTTAAAGGTAACAAATTCTTGCACA
TCAAAGGCTTTAAATTCATTGGTATTTATTATTGTGGAGCTGCAAACTTATGCATTGCAT
ATGAGGGAATCAATTTGTAATGAAGATTTAGAAATGATTATTGATAAAGTGCAAAGGGAT
ATGTATGCATCATTTGTATGTCTTTTTCGACAAGTATTTTCGCAAACACCTATGTTAATG
ATGGAGGTAATGACTCTCTTGGCTAACTTTAGTGTTTACTCTGCTTCTGGTGAGAATTGT
GATCAACCATATCTAAAAGTTCATTATCCTGATATTGTTCCTCAAGATGTGTCAAAAGTA
GTGTGGACTGATGAAGAGAAAGAATTGTGGGATTCAATACAAGATGAAGCTTTGAATATG
AGGGGTGGTTCAAGGGGCATTGATTTTGATAATGAAGTCATGTCGAAGTTTGTTTCGCCA
TTGTCAGTGGAGATTGAACCAGATAATAGTGTTGACTATTATAAGACTGATCTTGTTTAT
CAGATGAATCTCACACATGAGCCTAATAACACTCTTTTGCTATGCAATTATGCAAACTTT
CTGAAAGTCTTCGTTCGAGATAATAATAGGGCGGAGGAGTGCTTCAAACGGGCAGTCCAA
GTGGAACCACCGGATGCAGAGGCCCTATGTCAGTACGCGATCTTCTTGTGGAAGGTTAAG
AACGATTTATGGGGAGCAGAAGAAAAATACCAACAGGCAGTGGCAGCTGAGCCTAGGAAC
CCTTATTATAGATGTACATATGCCAATTTCTTGTGGAACACGGGTGGCGAGGAAACTTGT
TTCCTTCCAAGTAGTACTTCTTCTATCAATAACAAGAAGGGTGAAGAAGTTTAG

Peptide Sequence

PEP ID

Solyc05g052700.3.1
PEP Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT3G47080.1)
Sequence

STLSFLNSSPKSNKWGHKNPNFICKLVLFSPKSLGSQYFEKNESKGHSRSIQPCCCSSRF
DEEKFDGEGIERGENEGSCAIFGSKDSIFPSKFESLEPSLFGIEAEPEAPYWPEREEVLW
AHIEQKAKSFGLPLSLRMMQKKHQWESCRFKDLKVTNSCTSKALNSLVFIIVELQTYALH
MRESICNEDLEMIIDKVQRDMYASFVCLFRQVFSQTPMLMMEVMTLLANFSVYSASGENC
DQPYLKVHYPDIVPQDVSKVVWTDEEKELWDSIQDEALNMRGGSRGIDFDNEVMSKFVSP
LSVEIEPDNSVDYYKTDLVYQMNLTHEPNNTLLLCNYANFLKVFVRDNNRAEECFKRAVQ
VEPPDAEALCQYAIFLWKVKNDLWGAEEKYQQAVAAEPRNPYYRCTYANFLWNTGGEETC
FLPSSTSSINNKKGEEV*

Transcript Sequence

Transcript ID

Solyc05g052700.3.1
Transcript Infomation

Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT3G47080.1)
Sequence

TCAACCCTTTCTTTTCTCAATTCATCTCCAAAATCAAACAAATGGGGTCATAAAAATCCA
AACTTTATTTGTAAACTTGTTCTTTTTAGCCCAAAATCACTTGGTTCACAATATTTTGAG
AAAAATGAGTCTAAAGGTCATAGTAGAAGCATACAACCATGTTGTTGTAGTTCAAGATTT
GATGAAGAAAAATTTGATGGTGAAGGGATTGAAAGAGGGGAAAATGAAGGGTCTTGTGCA
ATTTTTGGGAGTAAAGATTCAATTTTTCCATCAAAATTTGAGTCTCTTGAGCCAAGTTTG
TTTGGTATTGAGGCAGAACCAGAAGCACCCTATTGGCCAGAAAGGGAGGAAGTTTTATGG
GCACATATAGAACAAAAAGCCAAAAGTTTTGGACTTCCTTTGTCACTTAGAATGATGCAA
AAGAAACATCAATGGGAATCTTGTAGATTTAAAGATTTAAAGGTAACAAATTCTTGCACA
TCAAAGGCTTTAAATTCATTGGTATTTATTATTGTGGAGCTGCAAACTTATGCATTGCAT
ATGAGGGAATCAATTTGTAATGAAGATTTAGAAATGATTATTGATAAAGTGCAAAGGGAT
ATGTATGCATCATTTGTATGTCTTTTTCGACAAGTATTTTCGCAAACACCTATGTTAATG
ATGGAGGTAATGACTCTCTTGGCTAACTTTAGTGTTTACTCTGCTTCTGGTGAGAATTGT
GATCAACCATATCTAAAAGTTCATTATCCTGATATTGTTCCTCAAGATGTGTCAAAAGTA
GTGTGGACTGATGAAGAGAAAGAATTGTGGGATTCAATACAAGATGAAGCTTTGAATATG
AGGGGTGGTTCAAGGGGCATTGATTTTGATAATGAAGTCATGTCGAAGTTTGTTTCGCCA
TTGTCAGTGGAGATTGAACCAGATAATAGTGTTGACTATTATAAGACTGATCTTGTTTAT
CAGATGAATCTCACACATGAGCCTAATAACACTCTTTTGCTATGCAATTATGCAAACTTT
CTGAAAGTCTTCGTTCGAGATAATAATAGGGCGGAGGAGTGCTTCAAACGGGCAGTCCAA
GTGGAACCACCGGATGCAGAGGCCCTATGTCAGTACGCGATCTTCTTGTGGAAGGTTAAG
AACGATTTATGGGGAGCAGAAGAAAAATACCAACAGGCAGTGGCAGCTGAGCCTAGGAAC
CCTTATTATAGATGTACATATGCCAATTTCTTGTGGAACACGGGTGGCGAGGAAACTTGT
TTCCTTCCAAGTAGTACTTCTTCTATCAATAACAAGAAGGGTGAAGAAGTTTAGTCGTAA
CAGAGAAAAATTGTTCAAGAAATGCATCAAACTAAGGAGAAAAATGGGAAATGGCTATAT
TATTTGTTCTTGATTTTCTGTGTCTAGATTGAGTAGAGTGATTTGCATGGGAGCTGTTCA
CCACCACCAACAAC