Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc05g052520.3.1
CDS Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT1G07160.1)
Sequence

ATGCCTTGTGCCATAGCAATAACAAATTCTCAAATATTTTCACCATCACAACAAAAATCA
AAAGTAATTAATTCACCATTTTTCTGTAAACCATCATCTATACAATCGCCGGTAAATCTG
TCGTCCTTCTATGCATCATCATCACTATCTCCGGTGCCGGCACCGGCGGTTTTATGTCAA
TCACCTCTATCGCCGTTGAGTAATTGCTACAACAGAAATCTAAGGAAAGAGGAGGAACCG
ACGGAGTGCTCTACGTCATCATCGTCGACGAAGGCGGAAGCGGTGGCGATTTCAAAGAGG
AAGAGGCCGGCGAGGATTTCGATTCCGATTGTCTCGTTAGGTTTGGAAAACGTTAGTGAA
ACTCCGAGGGAAGAGAGTAGGGTGGATGAAGTGGAAGTTGAAGGAGAAGGATACTCTGTG
TTCTGTAAAAGAGGGGAAAAAAGAGGTGATATGGAAGATCGATATTCTGCGGTAGTAAAT
GATGATGCTAAAAATGGCTCTAAACAGGCTTTTTTTGGTGTATTTGATGGACACGGTGGA
GCAAAAGCTGCAGAGTTTGCGGCAAAGAATTTGGGCAGGAATATTATAAATGAAGTAGCG
TTGAGGAGTGAAGAGGGACTGGAAGAGGCAGTCAGAGAGGGATACCTCAGTACAGATGCG
GAGTTTCTAAAGCTAAATGCAAATGGAGGGAGCTGTTGTGTGACAGCACTGGTACATAAT
GGAGAACTTATTGTATCGAATGCTGGTGACTGTCGTGCTGTTATGAGCAGAGGAGGAGTG
GCGGAGGCAATCACGGTTGATCATTGTCCTTCAAGGCAAGATGAAATGGAAAGAATTCAA
CGCCTAGGTGGCTATGTAGATTGTTGCCGGGGTGTGTGGAGAATTCAAGGATCTCTTGCT
GTGTCACGAGGAATAGGAGATTCCCAACTTAAGAAATGGGTGATAGCTGAACCAGAGACC
AAAATATTGACTATTCGACCAGAATGTGAATTCTTGATCTTGGCATCCGATGGTCTTTGG
AAAAAGGTAAGTAATCAAGAAGCAGTGGATCTACTTCGACCTTTCTGCGTAGGTGTTGAT
AACCCACAGCCTTTATCTGCTTGCAAAAAGCTAGTCGATTTGGCAGTAACAAGAGGATCC
TCTGATGACATAAGTGCAATGATCATTCAACTAGGTCAATTCATTCAATAA

Peptide Sequence

PEP ID

Solyc05g052520.3.1
PEP Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT1G07160.1)
Sequence

MPCAIAITNSQIFSPSQQKSKVINSPFFCKPSSIQSPVNLSSFYASSSLSPVPAPAVLCQ
SPLSPLSNCYNRNLRKEEEPTECSTSSSSTKAEAVAISKRKRPARISIPIVSLGLENVSE
TPREESRVDEVEVEGEGYSVFCKRGEKRGDMEDRYSAVVNDDAKNGSKQAFFGVFDGHGG
AKAAEFAAKNLGRNIINEVALRSEEGLEEAVREGYLSTDAEFLKLNANGGSCCVTALVHN
GELIVSNAGDCRAVMSRGGVAEAITVDHCPSRQDEMERIQRLGGYVDCCRGVWRIQGSLA
VSRGIGDSQLKKWVIAEPETKILTIRPECEFLILASDGLWKKVSNQEAVDLLRPFCVGVD
NPQPLSACKKLVDLAVTRGSSDDISAMIIQLGQFIQ*

Transcript Sequence

Transcript ID

Solyc05g052520.3.1
Transcript Infomation

Protein phosphatase 2C family protein (AHRD V3.3 *** AT1G07160.1)
Sequence

ACAACCAAAAATTAAAACCTGCAAAAATTAAATTAGAGCAAAAATAGAACAAAGAACAAA
AATGCCTTGTGCCATAGCAATAACAAATTCTCAAATATTTTCACCATCACAACAAAAATC
AAAAGTAATTAATTCACCATTTTTCTGTAAACCATCATCTATACAATCGCCGGTAAATCT
GTCGTCCTTCTATGCATCATCATCACTATCTCCGGTGCCGGCACCGGCGGTTTTATGTCA
ATCACCTCTATCGCCGTTGAGTAATTGCTACAACAGAAATCTAAGGAAAGAGGAGGAACC
GACGGAGTGCTCTACGTCATCATCGTCGACGAAGGCGGAAGCGGTGGCGATTTCAAAGAG
GAAGAGGCCGGCGAGGATTTCGATTCCGATTGTCTCGTTAGGTTTGGAAAACGTTAGTGA
AACTCCGAGGGAAGAGAGTAGGGTGGATGAAGTGGAAGTTGAAGGAGAAGGATACTCTGT
GTTCTGTAAAAGAGGGGAAAAAAGAGGTGATATGGAAGATCGATATTCTGCGGTAGTAAA
TGATGATGCTAAAAATGGCTCTAAACAGGCTTTTTTTGGTGTATTTGATGGACACGGTGG
AGCAAAAGCTGCAGAGTTTGCGGCAAAGAATTTGGGCAGGAATATTATAAATGAAGTAGC
GTTGAGGAGTGAAGAGGGACTGGAAGAGGCAGTCAGAGAGGGATACCTCAGTACAGATGC
GGAGTTTCTAAAGCTAAATGCAAATGGAGGGAGCTGTTGTGTGACAGCACTGGTACATAA
TGGAGAACTTATTGTATCGAATGCTGGTGACTGTCGTGCTGTTATGAGCAGAGGAGGAGT
GGCGGAGGCAATCACGGTTGATCATTGTCCTTCAAGGCAAGATGAAATGGAAAGAATTCA
ACGCCTAGGTGGCTATGTAGATTGTTGCCGGGGTGTGTGGAGAATTCAAGGATCTCTTGC
TGTGTCACGAGGAATAGGAGATTCCCAACTTAAGAAATGGGTGATAGCTGAACCAGAGAC
CAAAATATTGACTATTCGACCAGAATGTGAATTCTTGATCTTGGCATCCGATGGTCTTTG
GAAAAAGGTAAGTAATCAAGAAGCAGTGGATCTACTTCGACCTTTCTGCGTAGGTGTTGA
TAACCCACAGCCTTTATCTGCTTGCAAAAAGCTAGTCGATTTGGCAGTAACAAGAGGATC
CTCTGATGACATAAGTGCAATGATCATTCAACTAGGTCAATTCATTCAATAAACCAATAC
TCGGAAGAATCTACTTGGATGACGACTTGCTGGTGTTCTGATGTTTATCACTTGCAATAC
CATGGAAGTTCACAGGTTAAATCATTAGAGTTTTTCAGTCTTAACCAAGCTTAACAGGAT
AGTTGTTAGTGTCAAC